NO09G01310.1, NO09G01310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01310.1
Unique NameNO09G01310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1499
Alignment locationchr9:433917..435565 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:433917..435565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01310.1 vs.
Match: EWM27653.1 (Thioesterase superfamily [Nannochloropsis gaditana])

HSP 1 Score: 616.3 bits (1588), Expect = 7.300e-173
Identity = 311/411 (75.67%), Postives = 344/411 (83.70%), Query Frame = 0 
Query:   27 PVLHLPRRHLTAHHKKGGTERLGDFKSPIVTQLWSRRSTAKELEMDSSHPGAPIRRKPSESRTTVTYAFTKDPFLCQSYENPWGFFRKGKLLEDMDALAGNIAFKHCEKDDKVPLLVTASVDRIRLSSNPTLDRDMEMSGHVVWTGKSSMQIDLEVRALPDTRPWINASFTFVARAPTTGKATAINRLEPETEMEKTLFEAVELKNQRRKALRKVAEHTGSKTVGQHPPDHVGEFDSEAMIKLLLKQARPLLEMPCLADPTCVLVDSTRASNSTIMQPQQRNMLNRVFGGFLMRRAYEIAFSTCYLFAGARPEFYQVAHVDFLSPVDVGDLMRFDSAVLYTHTGLETGSPHVHVQVVASICRPERVQSSISNTFNFIFRVPSKATVRKVLPANLDQAKRMIDRMTADLEDE 438
            P L L RR L    K  G   LG FKSPI+T LWS+R+T KELE+D   P  P+ R PSES+T+VTY FT++PFL QSYENPWGFFRKGKLLEDMDALAGN+AFKHCEKD KVPLLVTASVDRIRLSSNP LDRDMEM+G VVWTG SSMQIDLEV ALPD +PWI+ASFTFVAR P T KATAIN+L+PE+  E+  F AVE KNQRRK +RK     GS ++        G  D E MIKLLL QARPL+EMPCLADPTCVLVD+TRASNS+IMQPQQRNMLNRVFGGFLMRRAYEIA+STCYLFAG+RPEF+QVAHVDF SPVDVGDLMRFD+AVLYTHTG +TGSPHVHVQVVASICRPE V S+ISNTFNF+FRVP + TVRKVLPANLDQAKRMI+RMTA LED+
Sbjct:   29 PPLVLFRRRLGTPKKTSG---LGRFKSPIITHLWSQRATGKELEIDVRSPTEPVERTPSESQTSVTYEFTREPFLSQSYENPWGFFRKGKLLEDMDALAGNVAFKHCEKDGKVPLLVTASVDRIRLSSNPKLDRDMEMTGRVVWTGSSSMQIDLEVHALPDAKPWISASFTFVARHPQTAKATAINKLKPESAAERETFSAVEQKNQRRKTVRKAKGTEGSPSLKS------GAVDVETMIKLLLSQARPLMEMPCLADPTCVLVDNTRASNSSIMQPQQRNMLNRVFGGFLMRRAYEIAYSTCYLFAGSRPEFFQVAHVDFTSPVDVGDLMRFDAAVLYTHTGQQTGSPHVHVQVVASICRPETVHSTISNTFNFVFRVPGRPTVRKVLPANLDQAKRMIERMTAVLEDD 430
The following BLAST results are available for this feature:
BLAST of NO09G01310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27653.17.300e-17375.67Thioesterase superfamily [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01310NO09G01310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01310.1NO09G01310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01310.1.cds1NO09G01310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01310.1.cds2NO09G01310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01310.1 ID=NO09G01310.1|Name=NO09G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1499bp
ATAGAACGATAGTTACTAGTAGCATCAGTAGCAATAGCAGCAGCCGGAGC
GATACCAATTACCGCCATGCGTCGATCCTCGGCAACGGTCGTCTCCTCTG
TGGTTGCCGCATCGAGCGCACGCTCTTCCTCTACACGCCTCTCGCCAGTC
CTCCATCTGCCGCGCCGGCACCTTACCGCACACCACAAAAAGGGTGGCAC
AGAAAGGTTGGGGGACTTCAAATCCCCCATTGTCACACAGTTGTGGTCGC
GACGCTCCACGGCGAAGGAGTTGGAGATGGATTCGAGTCATCCAGGCGCG
CCCATTAGAAGAAAGCCGAGTGAGTCACGCACCACCGTTACATACGCATT
TACGAAGGACCCCTTCCTTTGCCAGAGCTACGAGAATCCTTGGGGCTTCT
TCCGGAAGGGCAAGCTTTTGGAGGACATGGATGCACTCGCTGGAAACATT
GCATTTAAGCATTGTGAGAAGGATGATAAGGTCCCCTTGTTGGTGACAGC
AAGCGTGGACAGGATTCGGCTCTCAAGCAACCCTACGCTGGACCGTGACA
TGGAAATGTCCGGTCATGTCGTATGGACAGGAAAATCAAGCATGCAGATC
GATTTGGAAGTCCGGGCGTTGCCGGACACTCGGCCCTGGATCAACGCGTC
ATTTACGTTCGTCGCGCGGGCACCCACTACTGGTAAGGCGACTGCGATCA
ATCGCTTGGAGCCCGAGACGGAGATGGAGAAGACACTATTTGAGGCAGTC
GAGCTAAAGAACCAGCGACGCAAGGCTTTGCGCAAGGTGGCGGAGCATAC
AGGGAGTAAGACTGTGGGGCAGCATCCACCGGATCACGTGGGGGAGTTCG
ATAGTGAGGCGATGATTAAATTGCTGCTGAAGCAGGCCCGTCCTTTGCTG
GAGATGCCTTGCTTGGCGGACCCGACGTGCGTGTTGGTGGATAGCACTCG
TGCATCCAACTCGACAATTATGCAACCCCAGCAACGGAATATGCTTAATC
GCGTGTTTGGGGGTTTCCTAATGCGACGAGCCTATGAGATTGCGTTCTCT
ACGTGCTATCTGTTCGCTGGGGCTCGGCCCGAATTTTACCAGGTGGCTCA
CGTGGACTTTCTATCGCCCGTGGATGTGGGAGATTTGATGCGTTTTGATT
CCGCGGTGCTCTACACGCACACAGGGCTAGAGACCGGCTCGCCCCATGTG
CACGTTCAGGTGGTGGCATCAATTTGTCGGCCAGAGAGAGTGCAGAGTTC
CATAAGCAATACCTTTAATTTTATTTTTCGTGTGCCAAGCAAGGCGACGG
TGCGGAAGGTGTTGCCGGCGAATTTGGACCAGGCAAAGCGGATGATTGAT
CGGATGACCGCTGACCTTGAGGACGAGTGAGGGAGCGAAGAAGGGAGGGG
GGCAGAAAGTGAAGATATGGATAGAGACGAAAGGGATGTAGATAGTCAAG
GGTGCACCAGGAATGGATGGCCAAAGAAACGTATCGTCAGTTTGAGCAG
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protein sequence of NO09G01310.1

>NO09G01310.1-protein ID=NO09G01310.1-protein|Name=NO09G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=438bp
MRRSSATVVSSVVAASSARSSSTRLSPVLHLPRRHLTAHHKKGGTERLGD
FKSPIVTQLWSRRSTAKELEMDSSHPGAPIRRKPSESRTTVTYAFTKDPF
LCQSYENPWGFFRKGKLLEDMDALAGNIAFKHCEKDDKVPLLVTASVDRI
RLSSNPTLDRDMEMSGHVVWTGKSSMQIDLEVRALPDTRPWINASFTFVA
RAPTTGKATAINRLEPETEMEKTLFEAVELKNQRRKALRKVAEHTGSKTV
GQHPPDHVGEFDSEAMIKLLLKQARPLLEMPCLADPTCVLVDSTRASNST
IMQPQQRNMLNRVFGGFLMRRAYEIAFSTCYLFAGARPEFYQVAHVDFLS
PVDVGDLMRFDSAVLYTHTGLETGSPHVHVQVVASICRPERVQSSISNTF
NFIFRVPSKATVRKVLPANLDQAKRMIDRMTADLEDE*
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mRNA from alignment at chr9:433917..435565+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01310.1 ID=NO09G01310.1|Name=NO09G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1649bp|location=Sequence derived from alignment at chr9:433917..435565+ (Nannochloropsis oceanica)
ATAGAACGATAGTTACTAGTAGCATCAGTAGCAATAGCAGCAGCCGGAGC
GATACCAATTACCGCCATGCGTCGATCCTCGGCAACGGTCGTCTCCTCTG
TGGTTGCCGCATCGAGCGCACGCTCTTCCTCTACACGCCTCTCGCCAGTC
CTCCATCTGCCGCGCCGGCACCTTACCGCACACCACAAAAAGGGTGGCAC
AGAAAGGTTGGGGGACTTCAAATCCCCCATTGTCACACAGTTGTGGTCGC
GACGCTCCACGGCGAAGGAGTTGGAGATGGATTCGAGTCATCCAGGCGCG
CCCATTAGAAGAAAGCCGAGTGAGTCACGCACCACCGTTACATACGCATT
TACGAAGGACCCCTTCCTTTGCCAGAGCTACGAGAATCCTTGGGGCTTCT
TCCGGAAGGGCAAGCTTTTGGAGGACATGGATGCACTCGCTGGAAACATT
GCATTTAAGCATTGTGAGAAGGATGATAAGGTCCCCTTGTTGGTAAGGCG
TAGTAAAGGAGGAGGCGGTTGTGTGGAGGAAAAGGCAGGGCTTGTGGATA
AGGGAAAGCCATCACCCGCAATAGTCTGATACTCGTCCACAAAATCTCAT
TTCCTTTTTGCTTCCGAACATCCCCCCCGCACCATACTCCAGGTGACAGC
AAGCGTGGACAGGATTCGGCTCTCAAGCAACCCTACGCTGGACCGTGACA
TGGAAATGTCCGGTCATGTCGTATGGACAGGAAAATCAAGCATGCAGATC
GATTTGGAAGTCCGGGCGTTGCCGGACACTCGGCCCTGGATCAACGCGTC
ATTTACGTTCGTCGCGCGGGCACCCACTACTGGTAAGGCGACTGCGATCA
ATCGCTTGGAGCCCGAGACGGAGATGGAGAAGACACTATTTGAGGCAGTC
GAGCTAAAGAACCAGCGACGCAAGGCTTTGCGCAAGGTGGCGGAGCATAC
AGGGAGTAAGACTGTGGGGCAGCATCCACCGGATCACGTGGGGGAGTTCG
ATAGTGAGGCGATGATTAAATTGCTGCTGAAGCAGGCCCGTCCTTTGCTG
GAGATGCCTTGCTTGGCGGACCCGACGTGCGTGTTGGTGGATAGCACTCG
TGCATCCAACTCGACAATTATGCAACCCCAGCAACGGAATATGCTTAATC
GCGTGTTTGGGGGTTTCCTAATGCGACGAGCCTATGAGATTGCGTTCTCT
ACGTGCTATCTGTTCGCTGGGGCTCGGCCCGAATTTTACCAGGTGGCTCA
CGTGGACTTTCTATCGCCCGTGGATGTGGGAGATTTGATGCGTTTTGATT
CCGCGGTGCTCTACACGCACACAGGGCTAGAGACCGGCTCGCCCCATGTG
CACGTTCAGGTGGTGGCATCAATTTGTCGGCCAGAGAGAGTGCAGAGTTC
CATAAGCAATACCTTTAATTTTATTTTTCGTGTGCCAAGCAAGGCGACGG
TGCGGAAGGTGTTGCCGGCGAATTTGGACCAGGCAAAGCGGATGATTGAT
CGGATGACCGCTGACCTTGAGGACGAGTGAGGGAGCGAAGAAGGGAGGGG
GGCAGAAAGTGAAGATATGGATAGAGACGAAAGGGATGTAGATAGTCAAG
GGTGCACCAGGAATGGATGGCCAAAGAAACGTATCGTCAGTTTGAGCAG
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Coding sequence (CDS) from alignment at chr9:433917..435565+

>NO09G01310.1 ID=NO09G01310.1|Name=NO09G01310.1|organism=Nannochloropsis oceanica|type=CDS|length=1314bp|location=Sequence derived from alignment at chr9:433917..435565+ (Nannochloropsis oceanica)
ATGCGTCGATCCTCGGCAACGGTCGTCTCCTCTGTGGTTGCCGCATCGAG
CGCACGCTCTTCCTCTACACGCCTCTCGCCAGTCCTCCATCTGCCGCGCC
GGCACCTTACCGCACACCACAAAAAGGGTGGCACAGAAAGGTTGGGGGAC
TTCAAATCCCCCATTGTCACACAGTTGTGGTCGCGACGCTCCACGGCGAA
GGAGTTGGAGATGGATTCGAGTCATCCAGGCGCGCCCATTAGAAGAAAGC
CGAGTGAGTCACGCACCACCGTTACATACGCATTTACGAAGGACCCCTTC
CTTTGCCAGAGCTACGAGAATCCTTGGGGCTTCTTCCGGAAGGGCAAGCT
TTTGGAGGACATGGATGCACTCGCTGGAAACATTGCATTTAAGCATTGTG
AGAAGGATGATAAGGTCCCCTTGTTGGTGACAGCAAGCGTGGACAGGATT
CGGCTCTCAAGCAACCCTACGCTGGACCGTGACATGGAAATGTCCGGTCA
TGTCGTATGGACAGGAAAATCAAGCATGCAGATCGATTTGGAAGTCCGGG
CGTTGCCGGACACTCGGCCCTGGATCAACGCGTCATTTACGTTCGTCGCG
CGGGCACCCACTACTGGTAAGGCGACTGCGATCAATCGCTTGGAGCCCGA
GACGGAGATGGAGAAGACACTATTTGAGGCAGTCGAGCTAAAGAACCAGC
GACGCAAGGCTTTGCGCAAGGTGGCGGAGCATACAGGGAGTAAGACTGTG
GGGCAGCATCCACCGGATCACGTGGGGGAGTTCGATAGTGAGGCGATGAT
TAAATTGCTGCTGAAGCAGGCCCGTCCTTTGCTGGAGATGCCTTGCTTGG
CGGACCCGACGTGCGTGTTGGTGGATAGCACTCGTGCATCCAACTCGACA
ATTATGCAACCCCAGCAACGGAATATGCTTAATCGCGTGTTTGGGGGTTT
CCTAATGCGACGAGCCTATGAGATTGCGTTCTCTACGTGCTATCTGTTCG
CTGGGGCTCGGCCCGAATTTTACCAGGTGGCTCACGTGGACTTTCTATCG
CCCGTGGATGTGGGAGATTTGATGCGTTTTGATTCCGCGGTGCTCTACAC
GCACACAGGGCTAGAGACCGGCTCGCCCCATGTGCACGTTCAGGTGGTGG
CATCAATTTGTCGGCCAGAGAGAGTGCAGAGTTCCATAAGCAATACCTTT
AATTTTATTTTTCGTGTGCCAAGCAAGGCGACGGTGCGGAAGGTGTTGCC
GGCGAATTTGGACCAGGCAAAGCGGATGATTGATCGGATGACCGCTGACC
TTGAGGACGAGTGA
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Synonyms
Publications