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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr9 | genome | chr9:403235..405916 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G01240.1 vs.
Match: XP_005853768.1 (glycoside hydrolase family 37, partial [Nannochloropsis gaditana CCMP526]; EKU22589.1 glycoside hydrolase family 37, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 390.6 bits (1002), Expect = 1.200e-104 Identity = 191/286 (66.78%), Postives = 227/286 (79.37%), Query Frame = 0
Query: 12 LFALVNPFLNHAQQACNTTLLLDEAQALLRANVDPTQGWTVPSKATAPFLDSTSSLFTAYAYAKFDPDAGMKELLASLAGQWPINGLVPRIRFPAASDGDAWLQGTFFPGPSQWQAPQGES--NLTSAGLAAPPYHAIIAMQLFNARRDDAGLAFLAEVFPAIYKYHGYLHLSRDAHNHLVYSYHPWESELPADSPIWAEVLNATQARLTAEEWVPRVPLEEPASIAGYPGEEIFTAEMYLVDLMGRGSGYDDTRIQQETPFLVIDVEFNSVLAAADVSLAAMAKI 296
L LV PFL AQ ACNTTLLLD+A+ LL N D QGWTVPSKATAP+LDSTSSLFTAYAYAKFDPDAGMKEL+A L+GQWP GLVPRIRFP +S+G AWL+GT++PGP+QWQ P+ S L++AGLAAPP+HAI+AMQLFN VFP I+KYH YLH SRDA NHLV+S+HPWESELP DSP+W+ L AT+ R+ AE W PRVPL+EPA++ GYPG+++F E+YLV+LM R Y+D RIQQ TPFL +DVEFN+VLAAADV+LA MAK+
Sbjct: 2 LLGLVAPFLTDAQHACNTTLLLDKAKTLLLTNFDAEQGWTVPSKATAPYLDSTSSLFTAYAYAKFDPDAGMKELIACLSGQWPSTGLVPRIRFPPSSEGSAWLEGTYYPGPAQWQTPRDGSAAALSTAGLAAPPWHAIVAMQLFN-------------VFPPIFKYHQYLHTSRDAKNHLVFSHHPWESELPGDSPVWSAALAATKERVEAEAWSPRVPLDEPAAVPGYPGDDVFGPELYLVELMAR-LEYEDARIQQSTPFLALDVEFNAVLAAADVALADMAKL 273
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G01240.1 ID=NO09G01240.1|Name=NO09G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=2400bp
ATGCTTGGAAGAACATCTGCAGCGGCTAGCATTCTCTTTGCCTTGGTCAA
CCCCTTTCTGAACCACGCGCAGCAAGCCTGCAACACGACCCTTCTACTGG
ATGAGGCCCAGGCGCTGCTACGAGCGAACGTCGATCCCACGCAAGGATGG
ACGGTGCCTTCCAAAGCCACGGCTCCCTTTCTCGACTCGACCTCCTCCCT
CTTTACTGCCTATGCCTATGCCAAGTTTGACCCGGACGCCGGCATGAAAG
AACTGCTGGCGAGCCTAGCAGGCCAGTGGCCCATCAATGGCCTCGTCCCC
CGTATACGTTTTCCCGCCGCCAGCGACGGCGACGCTTGGCTTCAAGGAAC
TTTCTTCCCCGGTCCTAGTCAATGGCAAGCCCCTCAAGGCGAGTCCAATC
TAACCAGCGCAGGACTTGCTGCCCCTCCCTATCATGCTATCATCGCAATG
CAACTCTTTAATGCCCGTCGGGACGATGCAGGCCTGGCTTTCCTCGCTGA
AGTCTTTCCTGCCATTTATAAGTATCATGGCTATCTACATTTATCTCGAG
ATGCACACAATCACTTGGTTTATTCCTATCATCCGTGGGAAAGCGAGCTC
CCAGCCGACTCACCCATATGGGCCGAGGTGCTCAACGCTACCCAAGCACG
ACTGACTGCCGAGGAGTGGGTGCCACGCGTACCCCTGGAGGAGCCAGCAA
GCATCGCTGGATATCCTGGAGAAGAGATATTTACGGCAGAAATGTATTTG
GTTGATTTGATGGGGAGGGGAAGTGGGTATGATGACACGAGGATTCAACA
GGAGACGCCTTTCTTGGTGATTGACGTGGAATTTAATTCGGTGTTAGCGG
CGGCGGATGTGAGTCTGGCGGCAATGGCGAAGATATTGCAGCTGCACAGT
TCGGACGTGGTGGATGATGGGATGCGGAATGCGGTGACGGGGTGGGCGGA
CACAGCAAGCACACGGTTAGAGTACCTGTGGGCGGGTGATCGGTATAGTA
GTTATTTGCTTGAAGCGAACGCAGCACCCAAAATGGCCTCAACGAAAATC
GAGGCAGCAACAGCATCAAGGGTATCTTTTGTGGCGGCATCGACGGCCTC
AACGGCGGTGTCGCAGAAGGGCGTGGTAGCTGGGTTAGGAGTGGGGGGTT
TGACGGCGCAGGCGAAGGGAGCCGGTAGTAGTGGTAGGGCTGCTGGTACT
GCTGCTACTGCTACTACTACTGGTAGTGGCAGTAAACGACCGAAGGTGAC
AACACCGGTGCATCATCATCAGGGAGGAACATTGCGCAGCTTGGCCATGC
CCAAGAAACCCCCCGCAGTGTCCGCCCCTCCTCCCTCCCCTCCCTCCGTC
CCTTTGCCCCCCGGAAGCTTCTATCCTTTCAGCGTCGTAAGTAATTTTTG
GCCTTTGTATGTGGGAGGAAGTGGTCTGCCTCCTTCTCGAGTGGAAGGCC
TCTTCTTTCAAATCATTACGCCGGGCTTAAACTCATCTTTTGATTGTCAA
GGGGATGTGTATAGACTACCCACCAGTGCCTGTGCCGTAAACGACCCCAA
ACCCAAGGTATCTCTCCTGCACAATCTAATTGTCCAAAGAGGCCTGGCCA
TGAATGGGGACTTCGGTTTGAATCAGTGGCTACTGAACGAGACGGTTTCG
TTGGTCTGTGCCGCGAGCATGGACCCATTTGCGAAGCCTCCGGCGACGTC
CCCGACGTTTCGGTTTTGTCGGTATTTTGATCCTGTCTCTGGTTTGCCCC
AGGGGAAAAAGGAGGACATGTATGGAGAGGAGAGCACGTTGGCTGCGGCG
TTGGTTTGGACGTTGTTGCATGCTGATGCTCCGGGAGGGGCAGAGACTCC
GCCTATAAGTCATGATCTCACGTTTGCTTTGGTGGTAGTGGAGTTGGTTA
TTGCGTTTGCAACGGGGATGGGGTGTTTTGTATTGTCGTTGAGTTTGTTC
AGGAAGTTGTCGAGGGCGGATGTGGAAAATGTGGGGCCGGTATCGTCCAT
GTTGCTTGTGCGGGAGGAGGAAGAGGAGGGACACTATGAAGGGGAAGAGG
GGGATGATGATGGGGAAAGGAGCTACCAAGGAGGGGAGACGGAGGAGGAA
GAGAAGAGGAGTTCCAAAGCTCTCAGGCTTGGCGCTGGTTCGGCTGATGG
TAAGACGGCGTTGACGACCAAACAGAGAAAAAAGAGTGGCCACCCGGTGG
GCCGGCCCCGCGGGCTCTATGAATCATTCCGACATGGCCATGGGTATGGT
GGTACGAGCAGTGGAACTGAATTGCGACGTGTTGAAAGCGAGATGGGAAG
CTTGAATGAAAGAGGGGAAGGCGGTGAGAGTGGGGGGGGTATGATGTCAA
GCGTGGGCAGGGTGGTGGGTGCGGGCTTGTCGTTCTTGAAATTTTGGTAG back to topprotein sequence of NO09G01240.1 >NO09G01240.1-protein ID=NO09G01240.1-protein|Name=NO09G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=800bp
MLGRTSAAASILFALVNPFLNHAQQACNTTLLLDEAQALLRANVDPTQGW
TVPSKATAPFLDSTSSLFTAYAYAKFDPDAGMKELLASLAGQWPINGLVP
RIRFPAASDGDAWLQGTFFPGPSQWQAPQGESNLTSAGLAAPPYHAIIAM
QLFNARRDDAGLAFLAEVFPAIYKYHGYLHLSRDAHNHLVYSYHPWESEL
PADSPIWAEVLNATQARLTAEEWVPRVPLEEPASIAGYPGEEIFTAEMYL
VDLMGRGSGYDDTRIQQETPFLVIDVEFNSVLAAADVSLAAMAKILQLHS
SDVVDDGMRNAVTGWADTASTRLEYLWAGDRYSSYLLEANAAPKMASTKI
EAATASRVSFVAASTASTAVSQKGVVAGLGVGGLTAQAKGAGSSGRAAGT
AATATTTGSGSKRPKVTTPVHHHQGGTLRSLAMPKKPPAVSAPPPSPPSV
PLPPGSFYPFSVVSNFWPLYVGGSGLPPSRVEGLFFQIITPGLNSSFDCQ
GDVYRLPTSACAVNDPKPKVSLLHNLIVQRGLAMNGDFGLNQWLLNETVS
LVCAASMDPFAKPPATSPTFRFCRYFDPVSGLPQGKKEDMYGEESTLAAA
LVWTLLHADAPGGAETPPISHDLTFALVVVELVIAFATGMGCFVLSLSLF
RKLSRADVENVGPVSSMLLVREEEEEGHYEGEEGDDDGERSYQGGETEEE
EKRSSKALRLGAGSADGKTALTTKQRKKSGHPVGRPRGLYESFRHGHGYG
GTSSGTELRRVESEMGSLNERGEGGESGGGMMSSVGRVVGAGLSFLKFW* back to topmRNA from alignment at chr9:403235..405916- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G01240.1 ID=NO09G01240.1|Name=NO09G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=2682bp|location=Sequence derived from alignment at chr9:403235..405916- (Nannochloropsis oceanica)
ATGCTTGGAAGAACATCTGCAGCGGCTAGCATTCTCTTTGCCTTGGTCAA
CCCCTTTCTGAACCACGCGCAGCAAGCCTGCAACACGACCCTTCTACTGG
ATGAGGCCCAGGCGCTGCTACGAGCGAACGTCGATCCCACGCAAGGATGG
ACGGTGCCTTCCAAAGCCACGGCTCCCTTTCTCGACTCGACCTCCTCCCT
CTTTACTGCCTATGCCTATGCCAAGTTTGACCCGGACGCCGGCATGAAAG
AACTGCTGGCGAGGTACGCTTTATCTACTACTATGTGTGTGGCTGTATGG
CTATAGAGGGTCTGTCGCTTGCGGGCGCTGGAAACGAGGGAGTGAGGGAG
GGAGGGAGGCAGCAGAGGCGGAGCTCGGTACGGAGCTGGAGGGTCATTTC
TAGTCGGTCCGAATCGCAATTTTTGAGCCCCGTGCACGTCTTAGAAATTA
TCCAATACTACTCACCTTATTTTTTGGTCTCTGTACAATTCCTTCTTCAT
CCTTCCCTCCCAACTCTCCCCTGTCTCTCCTACCCCAAAACACAGCCTAG
CAGGCCAGTGGCCCATCAATGGCCTCGTCCCCCGTATACGTTTTCCCGCC
GCCAGCGACGGCGACGCTTGGCTTCAAGGAACTTTCTTCCCCGGTCCTAG
TCAATGGCAAGCCCCTCAAGGCGAGTCCAATCTAACCAGCGCAGGACTTG
CTGCCCCTCCCTATCATGCTATCATCGCAATGCAACTCTTTAATGCCCGT
CGGGACGATGCAGGCCTGGCTTTCCTCGCTGAAGTCTTTCCTGCCATTTA
TAAGTATCATGGCTATCTACATTTATCTCGAGATGCACACAATCACTTGG
TTTATTCCTATCATCCGTGGGAAAGCGAGCTCCCAGCCGACTCACCCATA
TGGGCCGAGGTGCTCAACGCTACCCAAGCACGACTGACTGCCGAGGAGTG
GGTGCCACGCGTACCCCTGGAGGAGCCAGCAAGCATCGCTGGATATCCTG
GAGAAGAGATATTTACGGCAGAAATGTATTTGGTTGATTTGATGGGGAGG
GGAAGTGGGTATGATGACACGAGGATTCAACAGGAGACGCCTTTCTTGGT
GATTGACGTGGAATTTAATTCGGTGTTAGCGGCGGCGGATGTGAGTCTGG
CGGCAATGGCGAAGATATTGCAGCTGCACAGTTCGGACGTGGTGGATGAT
GGGATGCGGAATGCGGTGACGGGGTGGGCGGACACAGCAAGCACACGGTT
AGAGTACCTGTGGGCGGGTGATCGGTATAGTAGTTATTTGCTTGAAGCGA
ACGCAGCACCCAAAATGGCCTCAACGAAAATCGAGGCAGCAACAGCATCA
AGGGTATCTTTTGTGGCGGCATCGACGGCCTCAACGGCGGTGTCGCAGAA
GGGCGTGGTAGCTGGGTTAGGAGTGGGGGGTTTGACGGCGCAGGCGAAGG
GAGCCGGTAGTAGTGGTAGGGCTGCTGGTACTGCTGCTACTGCTACTACT
ACTGGTAGTGGCAGTAAACGACCGAAGGTGACAACACCGGTGCATCATCA
TCAGGGAGGAACATTGCGCAGCTTGGCCATGCCCAAGAAACCCCCCGCAG
TGTCCGCCCCTCCTCCCTCCCCTCCCTCCGTCCCTTTGCCCCCCGGAAGC
TTCTATCCTTTCAGCGTCGTAAGTAATTTTTGGCCTTTGTATGTGGGAGG
AAGTGGTCTGCCTCCTTCTCGAGTGGAAGGCCTCTTCTTTCAAATCATTA
CGCCGGGCTTAAACTCATCTTTTGATTGTCAAGGGGATGTGTATAGACTA
CCCACCAGTGCCTGTGCCGTAAACGACCCCAAACCCAAGGTATCTCTCCT
GCACAATCTAATTGTCCAAAGAGGCCTGGCCATGAATGGGGACTTCGGTT
TGAATCAGTGGCTACTGAACGAGACGGTTTCGTTGGTCTGTGCCGCGAGC
ATGGACCCATTTGCGAAGCCTCCGGCGACGTCCCCGACGTTTCGGTTTTG
TCGGTATTTTGATCCTGTCTCTGGTTTGCCCCAGGGGAAAAAGGAGGACA
TGTATGGAGAGGAGAGCACGTTGGCTGCGGCGTTGGTTTGGACGTTGTTG
CATGCTGATGCTCCGGGAGGGGCAGAGACTCCGCCTATAAGTCATGATCT
CACGTTTGCTTTGGTGGTAGTGGAGTTGGTTATTGCGTTTGCAACGGGGA
TGGGGTGTTTTGTATTGTCGTTGAGTTTGTTCAGGAAGTTGTCGAGGGCG
GATGTGGAAAATGTGGGGCCGGTATCGTCCATGTTGCTTGTGCGGGAGGA
GGAAGAGGAGGGACACTATGAAGGGGAAGAGGGGGATGATGATGGGGAAA
GGAGCTACCAAGGAGGGGAGACGGAGGAGGAAGAGAAGAGGAGTTCCAAA
GCTCTCAGGCTTGGCGCTGGTTCGGCTGATGGTAAGACGGCGTTGACGAC
CAAACAGAGAAAAAAGAGTGGCCACCCGGTGGGCCGGCCCCGCGGGCTCT
ATGAATCATTCCGACATGGCCATGGGTATGGTGGTACGAGCAGTGGAACT
GAATTGCGACGTGTTGAAAGCGAGATGGGAAGCTTGAATGAAAGAGGGGA
AGGCGGTGAGAGTGGGGGGGGTATGATGTCAAGCGTGGGCAGGGTGGTGG
GTGCGGGCTTGTCGTTCTTGAAATTTTGGTAG back to topCoding sequence (CDS) from alignment at chr9:403235..405916- >NO09G01240.1 ID=NO09G01240.1|Name=NO09G01240.1|organism=Nannochloropsis oceanica|type=CDS|length=2400bp|location=Sequence derived from alignment at chr9:403235..405916- (Nannochloropsis oceanica)
ATGCTTGGAAGAACATCTGCAGCGGCTAGCATTCTCTTTGCCTTGGTCAA
CCCCTTTCTGAACCACGCGCAGCAAGCCTGCAACACGACCCTTCTACTGG
ATGAGGCCCAGGCGCTGCTACGAGCGAACGTCGATCCCACGCAAGGATGG
ACGGTGCCTTCCAAAGCCACGGCTCCCTTTCTCGACTCGACCTCCTCCCT
CTTTACTGCCTATGCCTATGCCAAGTTTGACCCGGACGCCGGCATGAAAG
AACTGCTGGCGAGCCTAGCAGGCCAGTGGCCCATCAATGGCCTCGTCCCC
CGTATACGTTTTCCCGCCGCCAGCGACGGCGACGCTTGGCTTCAAGGAAC
TTTCTTCCCCGGTCCTAGTCAATGGCAAGCCCCTCAAGGCGAGTCCAATC
TAACCAGCGCAGGACTTGCTGCCCCTCCCTATCATGCTATCATCGCAATG
CAACTCTTTAATGCCCGTCGGGACGATGCAGGCCTGGCTTTCCTCGCTGA
AGTCTTTCCTGCCATTTATAAGTATCATGGCTATCTACATTTATCTCGAG
ATGCACACAATCACTTGGTTTATTCCTATCATCCGTGGGAAAGCGAGCTC
CCAGCCGACTCACCCATATGGGCCGAGGTGCTCAACGCTACCCAAGCACG
ACTGACTGCCGAGGAGTGGGTGCCACGCGTACCCCTGGAGGAGCCAGCAA
GCATCGCTGGATATCCTGGAGAAGAGATATTTACGGCAGAAATGTATTTG
GTTGATTTGATGGGGAGGGGAAGTGGGTATGATGACACGAGGATTCAACA
GGAGACGCCTTTCTTGGTGATTGACGTGGAATTTAATTCGGTGTTAGCGG
CGGCGGATGTGAGTCTGGCGGCAATGGCGAAGATATTGCAGCTGCACAGT
TCGGACGTGGTGGATGATGGGATGCGGAATGCGGTGACGGGGTGGGCGGA
CACAGCAAGCACACGGTTAGAGTACCTGTGGGCGGGTGATCGGTATAGTA
GTTATTTGCTTGAAGCGAACGCAGCACCCAAAATGGCCTCAACGAAAATC
GAGGCAGCAACAGCATCAAGGGTATCTTTTGTGGCGGCATCGACGGCCTC
AACGGCGGTGTCGCAGAAGGGCGTGGTAGCTGGGTTAGGAGTGGGGGGTT
TGACGGCGCAGGCGAAGGGAGCCGGTAGTAGTGGTAGGGCTGCTGGTACT
GCTGCTACTGCTACTACTACTGGTAGTGGCAGTAAACGACCGAAGGTGAC
AACACCGGTGCATCATCATCAGGGAGGAACATTGCGCAGCTTGGCCATGC
CCAAGAAACCCCCCGCAGTGTCCGCCCCTCCTCCCTCCCCTCCCTCCGTC
CCTTTGCCCCCCGGAAGCTTCTATCCTTTCAGCGTCGTAAGTAATTTTTG
GCCTTTGTATGTGGGAGGAAGTGGTCTGCCTCCTTCTCGAGTGGAAGGCC
TCTTCTTTCAAATCATTACGCCGGGCTTAAACTCATCTTTTGATTGTCAA
GGGGATGTGTATAGACTACCCACCAGTGCCTGTGCCGTAAACGACCCCAA
ACCCAAGGTATCTCTCCTGCACAATCTAATTGTCCAAAGAGGCCTGGCCA
TGAATGGGGACTTCGGTTTGAATCAGTGGCTACTGAACGAGACGGTTTCG
TTGGTCTGTGCCGCGAGCATGGACCCATTTGCGAAGCCTCCGGCGACGTC
CCCGACGTTTCGGTTTTGTCGGTATTTTGATCCTGTCTCTGGTTTGCCCC
AGGGGAAAAAGGAGGACATGTATGGAGAGGAGAGCACGTTGGCTGCGGCG
TTGGTTTGGACGTTGTTGCATGCTGATGCTCCGGGAGGGGCAGAGACTCC
GCCTATAAGTCATGATCTCACGTTTGCTTTGGTGGTAGTGGAGTTGGTTA
TTGCGTTTGCAACGGGGATGGGGTGTTTTGTATTGTCGTTGAGTTTGTTC
AGGAAGTTGTCGAGGGCGGATGTGGAAAATGTGGGGCCGGTATCGTCCAT
GTTGCTTGTGCGGGAGGAGGAAGAGGAGGGACACTATGAAGGGGAAGAGG
GGGATGATGATGGGGAAAGGAGCTACCAAGGAGGGGAGACGGAGGAGGAA
GAGAAGAGGAGTTCCAAAGCTCTCAGGCTTGGCGCTGGTTCGGCTGATGG
TAAGACGGCGTTGACGACCAAACAGAGAAAAAAGAGTGGCCACCCGGTGG
GCCGGCCCCGCGGGCTCTATGAATCATTCCGACATGGCCATGGGTATGGT
GGTACGAGCAGTGGAACTGAATTGCGACGTGTTGAAAGCGAGATGGGAAG
CTTGAATGAAAGAGGGGAAGGCGGTGAGAGTGGGGGGGGTATGATGTCAA
GCGTGGGCAGGGTGGTGGGTGCGGGCTTGTCGTTCTTGAAATTTTGGTAG back to top
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