NO09G01220.1, NO09G01220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01220.1
Unique NameNO09G01220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1632
Alignment locationchr9:399147..400990 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:399147..400990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01220.1 vs.
Match: EWM27665.1 (methylmalonate-semialdehyde dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 804.7 bits (2077), Expect = 1.800e-229
Identity = 403/526 (76.62%), Postives = 453/526 (86.12%), Query Frame = 0 
Query:   18 LITCDNFIQGKYQPSSSSNDYLPVVSPVDNTQVGRVCISNAADVDMAVACAQGAFPGWSGLTMKARASIMFRFQHLMEIHAEELAQLVVRENGKNIAEARASVAKGNETVEWACGLPQMVQGKILQVSRGVTCSDLREPIGVVASVSPLNFPIMCPMWTIPIALTAGNCVILKPSEKVPLTMHRVAALLHEAGVPPGVFQIVNGTAEAVNALIDHPGVAGVTFVGSSRVAELVANRATKLNKRVLAMGGAKNHLVALPDCEVESAASDIVASFAGCAGQRCMAATVLILVGKQPALLDAIVSKAKGLAPGVTPGQVGAIIDAASQQRILGYISVAEKEGVKLLVDGRGWATSQKAGTWVGPTVLLHSNKEDKALKDEIFGPVLSVIEMQTWDEAIAFENANPHGNAACIYTTVGAHAAYFETRFRAGMIGVNVGVPVPREPFSFGGLFGTQSKYGCMVDITGEGCLEFVTNKRKITTKWAFPYGVGGSAAGGDVNGNGGGAFQGQQQQQQQQQQHASDRASFIGSM 544
            +I C+NF+ G+YQ  +S  DYLPV SP D  Q+G+V +S+A+DV  AVACAQ AFP WSG+TMKARASIMFRFQHLME HAEELA LVVRENGKN+AEARASVAKGNETVEWACGLPQM QGK+LQVSRGVTC D+RE IGVV SV PLNFPIMCPMWTIPIALTAGNC+ILKPSEKVPLTMHRVAALLHEAGVPPGVFQ VNG  EAVNALIDHP V GVTFVGSSRVAE+VA RA++LNKRVLAMGGAKNHLVALPDC VESA+SDIVASFAGCAGQRCMAATVLIL+G+Q +LL+A++ KA  L PGV PGQVGAIIDA SQ+RIL YI  AEK+GV LL+DGRGWA + KAGTWVGPT+LLH+  +D+A+++EIFGPVLSVI + TW+EA+A E +NPHGNAAC+YTTVGAHA +FETRFRAGMIGVNVGVPVPREPFSFGGLFGT+SKYG MVDITGEGCLEF+TNKRKIT+KWAFP G    A G       GG    ++  Q  +Q HA DRASF+G+M
Sbjct:   17 MIVCENFVDGQYQ--TSKGDYLPVKSPTDGVQIGKVYLSDASDVSTAVACAQRAFPAWSGMTMKARASIMFRFQHLMEQHAEELALLVVRENGKNLAEARASVAKGNETVEWACGLPQMAQGKLLQVSRGVTCCDMREAIGVVVSVCPLNFPIMCPMWTIPIALTAGNCLILKPSEKVPLTMHRVAALLHEAGVPPGVFQTVNGQVEAVNALIDHPLVRGVTFVGSSRVAEVVAERASRLNKRVLAMGGAKNHLVALPDCHVESASSDIVASFAGCAGQRCMAATVLILIGEQASLLEAVIRKAGALTPGVEPGQVGAIIDAISQERILRYIDEAEKQGVTLLLDGRGWAQAAKAGTWVGPTILLHTRADDEAMREEIFGPVLSVIRVATWEEALAIEASNPHGNAACVYTTVGAHAQFFETRFRAGMIGVNVGVPVPREPFSFGGLFGTRSKYGSMVDITGEGCLEFMTNKRKITSKWAFPEGESNGAGGRAAPLAEGGK---KELDQGVRQAHAPDRASFVGAM 537
The following BLAST results are available for this feature:
BLAST of NO09G01220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27665.11.800e-22976.62methylmalonate-semialdehyde dehydrogenase [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01220NO09G01220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01220.1NO09G01220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01220.1.cds1NO09G01220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01220.1.cds2NO09G01220.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01220.1 ID=NO09G01220.1|Name=NO09G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1632bp
ATGAGTCACCCCACCACCAATTCATCCGCTCCCTCCTCGAGCACGCAAGC
CCTGATCACCTGCGACAACTTCATCCAAGGGAAATACCAGCCCTCCTCGT
CCTCCAATGATTACCTCCCCGTTGTTTCGCCGGTCGACAATACGCAGGTC
GGGAGGGTCTGCATCTCGAATGCCGCCGATGTTGACATGGCAGTGGCCTG
TGCCCAAGGAGCCTTTCCTGGCTGGAGCGGATTGACCATGAAGGCAAGGG
CTAGCATCATGTTCCGCTTTCAGCATTTGATGGAAATTCACGCGGAAGAG
TTGGCCCAGCTGGTAGTGCGTGAGAACGGGAAGAACATCGCCGAGGCCCG
TGCTTCCGTCGCTAAAGGAAACGAGACAGTGGAATGGGCGTGTGGGCTGC
CCCAAATGGTGCAAGGGAAGATCTTGCAGGTCTCTCGTGGGGTCACATGC
TCGGATTTGCGCGAGCCTATAGGGGTGGTTGCTTCTGTGTCTCCTCTTAA
TTTTCCGATAATGTGTCCCATGTGGACGATTCCGATCGCGTTGACTGCAG
GGAACTGCGTGATTCTCAAGCCGTCGGAAAAGGTGCCTTTGACAATGCAC
CGTGTGGCGGCATTGTTACACGAAGCAGGTGTGCCTCCAGGGGTGTTTCA
GATCGTCAACGGTACAGCCGAGGCGGTGAATGCTCTAATCGACCATCCTG
GCGTTGCAGGAGTGACGTTCGTAGGATCCTCAAGGGTGGCGGAGTTGGTC
GCCAATCGGGCCACCAAATTAAATAAAAGGGTGCTGGCTATGGGAGGCGC
GAAGAACCATTTGGTGGCGCTACCGGATTGTGAGGTGGAGAGTGCGGCGA
GTGATATTGTGGCGAGCTTCGCGGGATGTGCCGGGCAACGGTGCATGGCG
GCCACCGTCCTCATCCTCGTCGGAAAGCAGCCTGCACTACTTGACGCCAT
AGTTAGCAAAGCCAAAGGCCTCGCTCCTGGAGTTACACCTGGACAGGTGG
GTGCTATCATTGACGCCGCGTCGCAACAGCGAATTTTGGGGTATATAAGC
GTGGCGGAGAAGGAGGGTGTGAAGCTGTTGGTGGACGGTCGAGGGTGGGC
AACGAGCCAAAAAGCGGGTACTTGGGTAGGGCCGACGGTGTTGCTGCATT
CGAATAAGGAGGACAAGGCGCTGAAAGACGAAATATTCGGGCCAGTCTTG
TCGGTGATTGAAATGCAGACCTGGGATGAAGCGATTGCCTTTGAAAATGC
CAATCCGCATGGGAATGCTGCTTGTATTTATACCACGGTTGGGGCTCACG
CTGCGTATTTTGAGACAAGATTCCGCGCGGGCATGATAGGGGTTAATGTG
GGCGTGCCTGTCCCGAGGGAGCCGTTCTCGTTTGGAGGGCTGTTTGGCAC
GCAAAGCAAATATGGGTGCATGGTAGATATTACGGGCGAGGGTTGTTTGG
AGTTCGTGACCAATAAAAGGAAAATAACAACCAAGTGGGCGTTTCCCTAT
GGGGTGGGGGGGAGTGCTGCTGGTGGGGACGTGAATGGGAATGGAGGGGG
CGCATTTCAGGGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATGCAT
CGGACCGGGCGAGTTTCATAGGGTCCATGTAG
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protein sequence of NO09G01220.1

>NO09G01220.1-protein ID=NO09G01220.1-protein|Name=NO09G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=544bp
MSHPTTNSSAPSSSTQALITCDNFIQGKYQPSSSSNDYLPVVSPVDNTQV
GRVCISNAADVDMAVACAQGAFPGWSGLTMKARASIMFRFQHLMEIHAEE
LAQLVVRENGKNIAEARASVAKGNETVEWACGLPQMVQGKILQVSRGVTC
SDLREPIGVVASVSPLNFPIMCPMWTIPIALTAGNCVILKPSEKVPLTMH
RVAALLHEAGVPPGVFQIVNGTAEAVNALIDHPGVAGVTFVGSSRVAELV
ANRATKLNKRVLAMGGAKNHLVALPDCEVESAASDIVASFAGCAGQRCMA
ATVLILVGKQPALLDAIVSKAKGLAPGVTPGQVGAIIDAASQQRILGYIS
VAEKEGVKLLVDGRGWATSQKAGTWVGPTVLLHSNKEDKALKDEIFGPVL
SVIEMQTWDEAIAFENANPHGNAACIYTTVGAHAAYFETRFRAGMIGVNV
GVPVPREPFSFGGLFGTQSKYGCMVDITGEGCLEFVTNKRKITTKWAFPY
GVGGSAAGGDVNGNGGGAFQGQQQQQQQQQQHASDRASFIGSM*
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mRNA from alignment at chr9:399147..400990+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01220.1 ID=NO09G01220.1|Name=NO09G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1844bp|location=Sequence derived from alignment at chr9:399147..400990+ (Nannochloropsis oceanica)
ATGAGTCACCCCACCACCAATTCATCCGCTCCCTCCTCGAGCACGCAAGC
CCTGATCACCTGCGACAACTTCATCCAAGGGAAATACCAGCCCTCCTCGT
CCTCCAATGATTACCTCCCCGTTGTTTCGCCGGTCGACAATACGCAGGTC
GGGAGGGTCTGCATCTCGAATGCCGCCGATGTTGACATGGCAGTGGCCTG
TGCCCAAGGAGCCTTTCCTGGCTGGAGCGGATTGACCATGAAGGCAAGGG
CTAGCATCATGTTCCGCTTTCAGCATTTGATGGAAATTCACGCGGAAGAG
TTGGCCCAGCTGGTAGTGCGTGAGAACGGGAAGAACATCGCCGAGGCCCG
TGCTTCCGTCGCTAAAGGAAACGAGACAGTGGAATGGGCGTGTGGGCTGC
CCCAAATGGTGCAAGGGAAGATCTTGCAGGTCTCTCGTGGGGTCACATGC
TCGGATTTGCGCGAGCCTATAGGGGTGGTTGCTTCTGTGTCTCCTCTTAA
TTTTCCGATAATGTGTCCCATGTGGACGATTCCGATCGCGTTGACTGCAG
GGAACTGCGTGATTCTCAAGCCGTCGGAAAAGGTGCCTTTGACAATGCAC
CGTGTGGCGGCATTGTTACACGAAGCAGGTGTGCCTCCAGGGGTGTTTCA
GATCGTCAACGGTACAGCCGAGGCGGTGAATGCTCTAATCGACCATCCTG
GCGTTGCAGGAGTGACGTTCGTAGGATCCTCAAGGGTGGCGGAGTTGGTC
GCCAATCGGGCCACCAAATTAAATAAAAGGGTGCTGGCTATGGGAGGCGC
GAAGAACCATTTGGTGGCGCTACCGGATTGTGAGGTGGAGAGTGCGGCGA
GTGATATTGTGGCGAGCTTCGCGGGATGTGCCGGGCAACGGTGCATGGTA
CGTTGCCGCGTGTAAATGTTTTGATGGGTGACATTTCTATGTCTCTCCTC
CTCCGGTCGTGCACTCTTTGCCATCACCATTCGGTGATGGTTCTTTCGTC
TACTTTCAATCTTTTTCATTCATTTATTCGTAATTGTTTGTTAATTTGTC
GTCTTAAATCTTCTCATACACACGCAATTTTACTCCGCTCCTCCCCTTCC
TCTGCACAGGCGGCCACCGTCCTCATCCTCGTCGGAAAGCAGCCTGCACT
ACTTGACGCCATAGTTAGCAAAGCCAAAGGCCTCGCTCCTGGAGTTACAC
CTGGACAGGTGGGTGCTATCATTGACGCCGCGTCGCAACAGCGAATTTTG
GGGTATATAAGCGTGGCGGAGAAGGAGGGTGTGAAGCTGTTGGTGGACGG
TCGAGGGTGGGCAACGAGCCAAAAAGCGGGTACTTGGGTAGGGCCGACGG
TGTTGCTGCATTCGAATAAGGAGGACAAGGCGCTGAAAGACGAAATATTC
GGGCCAGTCTTGTCGGTGATTGAAATGCAGACCTGGGATGAAGCGATTGC
CTTTGAAAATGCCAATCCGCATGGGAATGCTGCTTGTATTTATACCACGG
TTGGGGCTCACGCTGCGTATTTTGAGACAAGATTCCGCGCGGGCATGATA
GGGGTTAATGTGGGCGTGCCTGTCCCGAGGGAGCCGTTCTCGTTTGGAGG
GCTGTTTGGCACGCAAAGCAAATATGGGTGCATGGTAGATATTACGGGCG
AGGGTTGTTTGGAGTTCGTGACCAATAAAAGGAAAATAACAACCAAGTGG
GCGTTTCCCTATGGGGTGGGGGGGAGTGCTGCTGGTGGGGACGTGAATGG
GAATGGAGGGGGCGCATTTCAGGGACAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCATGCATCGGACCGGGCGAGTTTCATAGGGTCCATGTAG
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Coding sequence (CDS) from alignment at chr9:399147..400990+

>NO09G01220.1 ID=NO09G01220.1|Name=NO09G01220.1|organism=Nannochloropsis oceanica|type=CDS|length=1632bp|location=Sequence derived from alignment at chr9:399147..400990+ (Nannochloropsis oceanica)
ATGAGTCACCCCACCACCAATTCATCCGCTCCCTCCTCGAGCACGCAAGC
CCTGATCACCTGCGACAACTTCATCCAAGGGAAATACCAGCCCTCCTCGT
CCTCCAATGATTACCTCCCCGTTGTTTCGCCGGTCGACAATACGCAGGTC
GGGAGGGTCTGCATCTCGAATGCCGCCGATGTTGACATGGCAGTGGCCTG
TGCCCAAGGAGCCTTTCCTGGCTGGAGCGGATTGACCATGAAGGCAAGGG
CTAGCATCATGTTCCGCTTTCAGCATTTGATGGAAATTCACGCGGAAGAG
TTGGCCCAGCTGGTAGTGCGTGAGAACGGGAAGAACATCGCCGAGGCCCG
TGCTTCCGTCGCTAAAGGAAACGAGACAGTGGAATGGGCGTGTGGGCTGC
CCCAAATGGTGCAAGGGAAGATCTTGCAGGTCTCTCGTGGGGTCACATGC
TCGGATTTGCGCGAGCCTATAGGGGTGGTTGCTTCTGTGTCTCCTCTTAA
TTTTCCGATAATGTGTCCCATGTGGACGATTCCGATCGCGTTGACTGCAG
GGAACTGCGTGATTCTCAAGCCGTCGGAAAAGGTGCCTTTGACAATGCAC
CGTGTGGCGGCATTGTTACACGAAGCAGGTGTGCCTCCAGGGGTGTTTCA
GATCGTCAACGGTACAGCCGAGGCGGTGAATGCTCTAATCGACCATCCTG
GCGTTGCAGGAGTGACGTTCGTAGGATCCTCAAGGGTGGCGGAGTTGGTC
GCCAATCGGGCCACCAAATTAAATAAAAGGGTGCTGGCTATGGGAGGCGC
GAAGAACCATTTGGTGGCGCTACCGGATTGTGAGGTGGAGAGTGCGGCGA
GTGATATTGTGGCGAGCTTCGCGGGATGTGCCGGGCAACGGTGCATGGCG
GCCACCGTCCTCATCCTCGTCGGAAAGCAGCCTGCACTACTTGACGCCAT
AGTTAGCAAAGCCAAAGGCCTCGCTCCTGGAGTTACACCTGGACAGGTGG
GTGCTATCATTGACGCCGCGTCGCAACAGCGAATTTTGGGGTATATAAGC
GTGGCGGAGAAGGAGGGTGTGAAGCTGTTGGTGGACGGTCGAGGGTGGGC
AACGAGCCAAAAAGCGGGTACTTGGGTAGGGCCGACGGTGTTGCTGCATT
CGAATAAGGAGGACAAGGCGCTGAAAGACGAAATATTCGGGCCAGTCTTG
TCGGTGATTGAAATGCAGACCTGGGATGAAGCGATTGCCTTTGAAAATGC
CAATCCGCATGGGAATGCTGCTTGTATTTATACCACGGTTGGGGCTCACG
CTGCGTATTTTGAGACAAGATTCCGCGCGGGCATGATAGGGGTTAATGTG
GGCGTGCCTGTCCCGAGGGAGCCGTTCTCGTTTGGAGGGCTGTTTGGCAC
GCAAAGCAAATATGGGTGCATGGTAGATATTACGGGCGAGGGTTGTTTGG
AGTTCGTGACCAATAAAAGGAAAATAACAACCAAGTGGGCGTTTCCCTAT
GGGGTGGGGGGGAGTGCTGCTGGTGGGGACGTGAATGGGAATGGAGGGGG
CGCATTTCAGGGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATGCAT
CGGACCGGGCGAGTTTCATAGGGTCCATGTAG
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Synonyms
Publications