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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr9 | genome | chr9:396018..397766 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G01210.1 vs.
Match: EWM27669.1 (glutamyl-trna reductase [Nannochloropsis gaditana]) HSP 1 Score: 930.2 bits (2403), Expect = 3.000e-267 Identity = 498/588 (84.69%), Postives = 534/588 (90.82%), Query Frame = 0
Query: 1 MCPLRIFFALLQLHLLFMLGMSGSSAASASSAKAGGRNCPFRGWG-GSKATNTVTTA-AFLAPATLPRNIAAPRAPPSG-AGTAVLDEGGFRTSSGLFVAPSTGSKVESSMRKRRVGAALKPLYAATVAPP---ISTGVVAAAAEKEEKAEGKKKRKATSMTPLEVHVIGLSHHNAAVDVREKLSIPEAQWNDAANKLCESNVIAEACTLSTCNRFEIYFAAHDSYAAFHEATAFLERHSGLPQKVLRKNLFLLSGEDAIWHLMRVSGGLDSLVVGEGQILSQVKQCYNHGMEEDGKGGKVVSRMLNSAVAAGKRVRSETGISKGAVSISSAAVEFSQLRCPQDLGKTFEESKVAIIGAGKMSRLLMIHMASQGMKSVTLMNRGRERAETLAAEFPEMEVDIRLMDELWPVMHSHDVVYTSTSAQGCLLTKDNIQDAGLAPGKVIVDISVPRNVETEVADIEGMYSYNVDHLKEVVDRNTATRKKQMLEAEDLLVEEMEKFRSWQFSLGAVPALMKLQEKAETMRMEELKKASKKLNNLSDKELQTVERLTKGIVNKLLHGPMSHLRATEDLEKNLVALKTLKAVFEL 583
MCPLR+FFALLQLH+L + G+ G A+SA A+A GRNCPFRGW G + NT T++ AF+AP+ R+ AA + S AG + EGGFRTS GLFVAP+TG S R+RRVG ALKPLYAATVA P I +AAAAEK+EK KKKRKATSMTPLEVHVIGLSHHNAAV+VREKLSIPEAQWN+AANKLCES VIAEACTLSTCNRFEIYFAAHDSYAAFHEATAFLERHSGLPQ VLRKNLFLLSGEDAIWHLMRVSGGLDSLVVGEGQILSQVKQCYNHGMEEDGKGGKV+SRMLNSAVAAGKRVRSETGISKGAVSISSAAVEFSQLRCP+DLGK FE+S+VAI+GAGKMSRLLMIHMASQG+K+VTLMNRGRERAETLAAEFPEMEV +RLMD+LWPVMH+HDVVYTSTSAQGCLLTKDNIQ +GLAPGKVIVDISVPRNVETEV++IEGM++YNVDHLKEVVDRNTA RKKQMLEAEDLLVEEMEKFRSWQFSLGAVPALMKLQEKAETMRMEELKKASKKLNNLS+KELQTVERLTKGIVNKLLHGPMSHLRATEDLEKNLVALKTLKAVFEL
Sbjct: 61 MCPLRVFFALLQLHILCVFGLGGY-ASSAGDARATGRNCPFRGWAVGKTSANTATSSCAFVAPSPPSRSAAALSSTTSEVAGPS--SEGGFRTSMGLFVAPTTGHTAHSLSRRRRVGPALKPLYAATVAAPTASIPADAIAAAAEKKEKEANKKKRKATSMTPLEVHVIGLSHHNAAVEVREKLSIPEAQWNEAANKLCESGVIAEACTLSTCNRFEIYFAAHDSYAAFHEATAFLERHSGLPQSVLRKNLFLLSGEDAIWHLMRVSGGLDSLVVGEGQILSQVKQCYNHGMEEDGKGGKVISRMLNSAVAAGKRVRSETGISKGAVSISSAAVEFSQLRCPKDLGKPFEDSRVAIVGAGKMSRLLMIHMASQGVKAVTLMNRGRERAETLAAEFPEMEVAVRLMDDLWPVMHTHDVVYTSTSAQGCLLTKDNIQASGLAPGKVIVDISVPRNVETEVSEIEGMFAYNVDHLKEVVDRNTAMRKKQMLEAEDLLVEEMEKFRSWQFSLGAVPALMKLQEKAETMRMEELKKASKKLNNLSEKELQTVERLTKGIVNKLLHGPMSHLRATEDLEKNLVALKTLKAVFEL 645
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G01210.1 ID=NO09G01210.1|Name=NO09G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp
ATGTGCCCTCTCCGCATCTTCTTCGCCTTGTTGCAGCTCCACCTGCTCTT
CATGCTAGGCATGAGTGGTAGCTCTGCGGCGTCCGCGAGCAGTGCCAAAG
CTGGCGGCCGCAACTGCCCTTTCCGAGGCTGGGGTGGGAGCAAGGCCACG
AACACGGTGACGACCGCCGCCTTCTTGGCTCCGGCCACCCTTCCCCGCAA
CATCGCCGCCCCCCGTGCACCACCCAGCGGTGCCGGCACCGCCGTTTTGG
ATGAGGGCGGGTTCCGCACGTCTTCGGGGCTCTTTGTGGCGCCCTCAACG
GGCAGCAAGGTGGAATCCTCGATGCGCAAGCGTCGCGTGGGGGCTGCTCT
GAAGCCGCTCTATGCGGCAACCGTTGCCCCTCCTATTTCGACTGGCGTGG
TGGCCGCGGCAGCTGAAAAGGAGGAGAAAGCAGAAGGCAAGAAGAAGCGC
AAGGCCACGAGCATGACGCCTTTGGAAGTGCATGTGATTGGCTTGTCGCA
CCACAACGCCGCGGTGGATGTACGTGAGAAGCTCTCCATTCCCGAAGCGC
AATGGAACGACGCCGCCAACAAATTGTGTGAGAGCAATGTCATCGCTGAG
GCCTGCACCCTGTCGACGTGCAATCGTTTCGAGATCTACTTTGCGGCTCA
TGATTCCTACGCTGCCTTTCACGAGGCGACAGCTTTCTTGGAGCGTCACT
CGGGCCTGCCCCAGAAAGTTTTAAGAAAGAATTTGTTCCTCCTGTCGGGG
GAGGATGCTATCTGGCACTTGATGCGGGTATCAGGCGGCTTGGACTCGCT
GGTGGTAGGGGAGGGTCAGATTTTGAGTCAGGTGAAACAGTGCTATAACC
ACGGGATGGAGGAGGATGGGAAGGGCGGCAAAGTCGTGTCGCGGATGCTG
AACTCGGCCGTGGCGGCCGGGAAGCGTGTGCGCTCTGAAACGGGAATCAG
CAAGGGTGCTGTCTCCATTTCGTCAGCTGCGGTAGAGTTTTCTCAATTGC
GTTGCCCCCAGGACTTGGGAAAGACGTTTGAGGAAAGTAAGGTGGCCATT
ATTGGCGCGGGGAAAATGTCAAGGTTACTCATGATCCACATGGCGTCCCA
AGGCATGAAGAGCGTGACGCTGATGAACCGAGGAAGGGAGAGGGCAGAGA
CCTTGGCTGCGGAATTTCCCGAGATGGAGGTGGACATCCGACTGATGGAT
GAGTTGTGGCCGGTCATGCACTCGCATGACGTGGTCTACACCTCGACCTC
AGCGCAAGGGTGCTTGCTTACCAAGGACAACATCCAAGACGCTGGTTTGG
CTCCCGGTAAAGTCATTGTCGACATATCTGTCCCCCGCAATGTGGAGACG
GAGGTGGCTGACATAGAGGGCATGTATTCGTACAACGTGGATCATCTGAA
AGAGGTGGTTGACCGCAACACAGCCACGCGCAAGAAGCAGATGCTCGAGG
CGGAGGATTTGCTGGTGGAAGAGATGGAGAAATTTCGCTCGTGGCAGTTC
TCTCTCGGCGCAGTCCCGGCGCTGATGAAGCTCCAGGAGAAGGCAGAGAC
GATGCGGATGGAGGAGTTGAAAAAGGCGTCGAAAAAACTCAATAATCTCT
CGGACAAGGAACTCCAGACGGTTGAGAGGTTGACCAAGGGGATTGTGAAC
AAGCTGCTGCACGGACCTATGTCCCACTTAAGGGCAACGGAGGACTTGGA
GAAGAACCTAGTGGCGCTGAAGACATTGAAGGCCGTGTTTGAGCTCTAA back to topprotein sequence of NO09G01210.1 >NO09G01210.1-protein ID=NO09G01210.1-protein|Name=NO09G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=583bp
MCPLRIFFALLQLHLLFMLGMSGSSAASASSAKAGGRNCPFRGWGGSKAT
NTVTTAAFLAPATLPRNIAAPRAPPSGAGTAVLDEGGFRTSSGLFVAPST
GSKVESSMRKRRVGAALKPLYAATVAPPISTGVVAAAAEKEEKAEGKKKR
KATSMTPLEVHVIGLSHHNAAVDVREKLSIPEAQWNDAANKLCESNVIAE
ACTLSTCNRFEIYFAAHDSYAAFHEATAFLERHSGLPQKVLRKNLFLLSG
EDAIWHLMRVSGGLDSLVVGEGQILSQVKQCYNHGMEEDGKGGKVVSRML
NSAVAAGKRVRSETGISKGAVSISSAAVEFSQLRCPQDLGKTFEESKVAI
IGAGKMSRLLMIHMASQGMKSVTLMNRGRERAETLAAEFPEMEVDIRLMD
ELWPVMHSHDVVYTSTSAQGCLLTKDNIQDAGLAPGKVIVDISVPRNVET
EVADIEGMYSYNVDHLKEVVDRNTATRKKQMLEAEDLLVEEMEKFRSWQF
SLGAVPALMKLQEKAETMRMEELKKASKKLNNLSDKELQTVERLTKGIVN
KLLHGPMSHLRATEDLEKNLVALKTLKAVFEL* back to topmRNA from alignment at chr9:396018..397766- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G01210.1 ID=NO09G01210.1|Name=NO09G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp|location=Sequence derived from alignment at chr9:396018..397766- (Nannochloropsis oceanica)
ATGTGCCCTCTCCGCATCTTCTTCGCCTTGTTGCAGCTCCACCTGCTCTT
CATGCTAGGCATGAGTGGTAGCTCTGCGGCGTCCGCGAGCAGTGCCAAAG
CTGGCGGCCGCAACTGCCCTTTCCGAGGCTGGGGTGGGAGCAAGGCCACG
AACACGGTGACGACCGCCGCCTTCTTGGCTCCGGCCACCCTTCCCCGCAA
CATCGCCGCCCCCCGTGCACCACCCAGCGGTGCCGGCACCGCCGTTTTGG
ATGAGGGCGGGTTCCGCACGTCTTCGGGGCTCTTTGTGGCGCCCTCAACG
GGCAGCAAGGTGGAATCCTCGATGCGCAAGCGTCGCGTGGGGGCTGCTCT
GAAGCCGCTCTATGCGGCAACCGTTGCCCCTCCTATTTCGACTGGCGTGG
TGGCCGCGGCAGCTGAAAAGGAGGAGAAAGCAGAAGGCAAGAAGAAGCGC
AAGGCCACGAGCATGACGCCTTTGGAAGTGCATGTGATTGGCTTGTCGCA
CCACAACGCCGCGGTGGATGTACGTGAGAAGCTCTCCATTCCCGAAGCGC
AATGGAACGACGCCGCCAACAAATTGTGTGAGAGCAATGTCATCGCTGAG
GCCTGCACCCTGTCGACGTGCAATCGTTTCGAGATCTACTTTGCGGCTCA
TGATTCCTACGCTGCCTTTCACGAGGCGACAGCTTTCTTGGAGCGTCACT
CGGGCCTGCCCCAGAAAGTTTTAAGAAAGAATTTGTTCCTCCTGTCGGGG
GAGGATGCTATCTGGCACTTGATGCGGGTATCAGGCGGCTTGGACTCGCT
GGTGGTAGGGGAGGGTCAGATTTTGAGTCAGGTGAAACAGTGCTATAACC
ACGGGATGGAGGAGGATGGGAAGGGCGGCAAAGTCGTGTCGCGGATGCTG
AACTCGGCCGTGGCGGCCGGGAAGCGTGTGCGCTCTGAAACGGGAATCAG
CAAGGGTGCTGTCTCCATTTCGTCAGCTGCGGTAGAGTTTTCTCAATTGC
GTTGCCCCCAGGACTTGGGAAAGACGTTTGAGGAAAGTAAGGTGGCCATT
ATTGGCGCGGGGAAAATGTCAAGGTTACTCATGATCCACATGGCGTCCCA
AGGCATGAAGAGCGTGACGCTGATGAACCGAGGAAGGGAGAGGGCAGAGA
CCTTGGCTGCGGAATTTCCCGAGATGGAGGTGGACATCCGACTGATGGAT
GAGTTGTGGCCGGTCATGCACTCGCATGACGTGGTCTACACCTCGACCTC
AGCGCAAGGGTGCTTGCTTACCAAGGACAACATCCAAGACGCTGGTTTGG
CTCCCGGTAAAGTCATTGTCGACATATCTGTCCCCCGCAATGTGGAGACG
GAGGTGGCTGACATAGAGGGCATGTATTCGTACAACGTGGATCATCTGAA
AGAGGTGGTTGACCGCAACACAGCCACGCGCAAGAAGCAGATGCTCGAGG
CGGAGGATTTGCTGGTGGAAGAGATGGAGAAATTTCGCTCGTGGCAGTTC
TCTCTCGGCGCAGTCCCGGCGCTGATGAAGCTCCAGGAGAAGGCAGAGAC
GATGCGGATGGAGGAGTTGAAAAAGGCGTCGAAAAAACTCAATAATCTCT
CGGACAAGGAACTCCAGACGGTTGAGAGGTTGACCAAGGGGATTGTGAAC
AAGCTGCTGCACGGACCTATGTCCCACTTAAGGGCAACGGAGGACTTGGA
GAAGAACCTAGTGGCGCTGAAGACATTGAAGGCCGTGTTTGAGCTCTAA back to topCoding sequence (CDS) from alignment at chr9:396018..397766- >NO09G01210.1 ID=NO09G01210.1|Name=NO09G01210.1|organism=Nannochloropsis oceanica|type=CDS|length=1749bp|location=Sequence derived from alignment at chr9:396018..397766- (Nannochloropsis oceanica)
ATGTGCCCTCTCCGCATCTTCTTCGCCTTGTTGCAGCTCCACCTGCTCTT
CATGCTAGGCATGAGTGGTAGCTCTGCGGCGTCCGCGAGCAGTGCCAAAG
CTGGCGGCCGCAACTGCCCTTTCCGAGGCTGGGGTGGGAGCAAGGCCACG
AACACGGTGACGACCGCCGCCTTCTTGGCTCCGGCCACCCTTCCCCGCAA
CATCGCCGCCCCCCGTGCACCACCCAGCGGTGCCGGCACCGCCGTTTTGG
ATGAGGGCGGGTTCCGCACGTCTTCGGGGCTCTTTGTGGCGCCCTCAACG
GGCAGCAAGGTGGAATCCTCGATGCGCAAGCGTCGCGTGGGGGCTGCTCT
GAAGCCGCTCTATGCGGCAACCGTTGCCCCTCCTATTTCGACTGGCGTGG
TGGCCGCGGCAGCTGAAAAGGAGGAGAAAGCAGAAGGCAAGAAGAAGCGC
AAGGCCACGAGCATGACGCCTTTGGAAGTGCATGTGATTGGCTTGTCGCA
CCACAACGCCGCGGTGGATGTACGTGAGAAGCTCTCCATTCCCGAAGCGC
AATGGAACGACGCCGCCAACAAATTGTGTGAGAGCAATGTCATCGCTGAG
GCCTGCACCCTGTCGACGTGCAATCGTTTCGAGATCTACTTTGCGGCTCA
TGATTCCTACGCTGCCTTTCACGAGGCGACAGCTTTCTTGGAGCGTCACT
CGGGCCTGCCCCAGAAAGTTTTAAGAAAGAATTTGTTCCTCCTGTCGGGG
GAGGATGCTATCTGGCACTTGATGCGGGTATCAGGCGGCTTGGACTCGCT
GGTGGTAGGGGAGGGTCAGATTTTGAGTCAGGTGAAACAGTGCTATAACC
ACGGGATGGAGGAGGATGGGAAGGGCGGCAAAGTCGTGTCGCGGATGCTG
AACTCGGCCGTGGCGGCCGGGAAGCGTGTGCGCTCTGAAACGGGAATCAG
CAAGGGTGCTGTCTCCATTTCGTCAGCTGCGGTAGAGTTTTCTCAATTGC
GTTGCCCCCAGGACTTGGGAAAGACGTTTGAGGAAAGTAAGGTGGCCATT
ATTGGCGCGGGGAAAATGTCAAGGTTACTCATGATCCACATGGCGTCCCA
AGGCATGAAGAGCGTGACGCTGATGAACCGAGGAAGGGAGAGGGCAGAGA
CCTTGGCTGCGGAATTTCCCGAGATGGAGGTGGACATCCGACTGATGGAT
GAGTTGTGGCCGGTCATGCACTCGCATGACGTGGTCTACACCTCGACCTC
AGCGCAAGGGTGCTTGCTTACCAAGGACAACATCCAAGACGCTGGTTTGG
CTCCCGGTAAAGTCATTGTCGACATATCTGTCCCCCGCAATGTGGAGACG
GAGGTGGCTGACATAGAGGGCATGTATTCGTACAACGTGGATCATCTGAA
AGAGGTGGTTGACCGCAACACAGCCACGCGCAAGAAGCAGATGCTCGAGG
CGGAGGATTTGCTGGTGGAAGAGATGGAGAAATTTCGCTCGTGGCAGTTC
TCTCTCGGCGCAGTCCCGGCGCTGATGAAGCTCCAGGAGAAGGCAGAGAC
GATGCGGATGGAGGAGTTGAAAAAGGCGTCGAAAAAACTCAATAATCTCT
CGGACAAGGAACTCCAGACGGTTGAGAGGTTGACCAAGGGGATTGTGAAC
AAGCTGCTGCACGGACCTATGTCCCACTTAAGGGCAACGGAGGACTTGGA
GAAGAACCTAGTGGCGCTGAAGACATTGAAGGCCGTGTTTGAGCTCTAA back to top
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