NO09G01090.1, NO09G01090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01090.1
Unique NameNO09G01090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length735
Alignment locationchr9:356718..357452 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:356718..357452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01090.1 vs.
Match: EWM22462.1 (myo-inositol 2-dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 386.3 bits (991), Expect = 6.900e-104
Identity = 181/243 (74.49%), Postives = 213/243 (87.65%), Query Frame = 0 
Query:    1 MAFKQAVVVLLSLAFHFPVLTWGFFLRMSRTPLGVGVVGCGRIGQIHGNTLAFHTPGARLVAITDPFEEMGKKLIGQTGGMPTYHKDYFELLDRDDVHAVVVASPTPCHVEQIMSAVERGKHDFCEKPISNDLSAIDACTQAAAKAGTKLILGFQRRFDINFQNVKKQITQGAIGEMRTFRIVSRDQAPPPAEYLKTSGGIFLDMSSHDFDMARFLVGSEIEEIYVKGASWVPEAKAAGDLDT 244
            M + ++  ++L  A   PV+ + FFLRMS++PLGVGV+GCGRIGQIH NTLAF TPGARLVAITDPFE+MGKK++ QTGG+P+YHK+Y +LLD +D+ AVVVASPTP HVEQIM+AVERGKH FCEKPISNDL+ ID+C +AAAKAGTKLILGFQRRFD NFQ VK+QI QGAIG++RT RIVSRD APPPA+YLKTSGGIFLDMSSHDFDMARFLVGS+IEE++V+G +W PEA  AGDLDT
Sbjct:   39 MTYARSSALILIPALLLPVMPYAFFLRMSQSPLGVGVIGCGRIGQIHSNTLAFRTPGARLVAITDPFEDMGKKVLDQTGGIPSYHKNYLDLLDEEDIKAVVVASPTPYHVEQIMAAVERGKHVFCEKPISNDLATIDSCIEAAAKAGTKLILGFQRRFDANFQAVKQQIVQGAIGKVRTIRIVSRDPAPPPADYLKTSGGIFLDMSSHDFDMARFLVGSDIEEVFVQGTAWGPEAAGAGDLDT 281
The following BLAST results are available for this feature:
BLAST of NO09G01090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22462.16.900e-10474.49myo-inositol 2-dehydrogenase [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01090NO09G01090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01090.1NO09G01090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01090.1.cds1NO09G01090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01090.1 ID=NO09G01090.1|Name=NO09G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=735bp
ATGGCCTTCAAGCAGGCCGTCGTCGTCCTTCTAAGTCTCGCCTTCCATTT
CCCGGTCCTAACTTGGGGCTTCTTTCTCCGCATGTCCCGAACACCGTTGG
GAGTAGGCGTCGTTGGCTGCGGGCGCATCGGACAGATACACGGCAATACC
CTCGCTTTCCACACGCCAGGCGCGCGGCTTGTGGCCATTACGGACCCCTT
CGAGGAGATGGGTAAGAAGTTAATAGGACAAACGGGTGGCATGCCCACCT
ACCACAAGGACTACTTCGAGCTGCTTGACCGCGACGATGTGCATGCCGTG
GTGGTGGCTTCACCCACGCCCTGCCACGTGGAGCAAATCATGTCGGCCGT
CGAGCGTGGCAAACACGACTTCTGTGAGAAACCGATCTCGAACGATCTCT
CTGCTATTGACGCCTGCACTCAAGCTGCGGCTAAGGCGGGCACCAAGCTC
ATCCTCGGCTTCCAACGTCGCTTCGACATCAACTTTCAAAATGTCAAGAA
GCAGATCACGCAAGGCGCAATTGGCGAAATGCGGACTTTCCGCATCGTAA
GTCGGGATCAGGCCCCACCCCCTGCTGAGTACCTCAAGACAAGCGGCGGC
ATCTTTTTGGACATGAGCAGCCACGATTTTGATATGGCTCGTTTCTTGGT
GGGGAGCGAGATTGAGGAGATCTACGTGAAAGGAGCCTCGTGGGTGCCCG
AGGCTAAGGCGGCAGGGGACCTGGACACTCTGTGA
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protein sequence of NO09G01090.1

>NO09G01090.1-protein ID=NO09G01090.1-protein|Name=NO09G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MAFKQAVVVLLSLAFHFPVLTWGFFLRMSRTPLGVGVVGCGRIGQIHGNT
LAFHTPGARLVAITDPFEEMGKKLIGQTGGMPTYHKDYFELLDRDDVHAV
VVASPTPCHVEQIMSAVERGKHDFCEKPISNDLSAIDACTQAAAKAGTKL
ILGFQRRFDINFQNVKKQITQGAIGEMRTFRIVSRDQAPPPAEYLKTSGG
IFLDMSSHDFDMARFLVGSEIEEIYVKGASWVPEAKAAGDLDTL*
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mRNA from alignment at chr9:356718..357452-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01090.1 ID=NO09G01090.1|Name=NO09G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=735bp|location=Sequence derived from alignment at chr9:356718..357452- (Nannochloropsis oceanica)
ATGGCCTTCAAGCAGGCCGTCGTCGTCCTTCTAAGTCTCGCCTTCCATTT
CCCGGTCCTAACTTGGGGCTTCTTTCTCCGCATGTCCCGAACACCGTTGG
GAGTAGGCGTCGTTGGCTGCGGGCGCATCGGACAGATACACGGCAATACC
CTCGCTTTCCACACGCCAGGCGCGCGGCTTGTGGCCATTACGGACCCCTT
CGAGGAGATGGGTAAGAAGTTAATAGGACAAACGGGTGGCATGCCCACCT
ACCACAAGGACTACTTCGAGCTGCTTGACCGCGACGATGTGCATGCCGTG
GTGGTGGCTTCACCCACGCCCTGCCACGTGGAGCAAATCATGTCGGCCGT
CGAGCGTGGCAAACACGACTTCTGTGAGAAACCGATCTCGAACGATCTCT
CTGCTATTGACGCCTGCACTCAAGCTGCGGCTAAGGCGGGCACCAAGCTC
ATCCTCGGCTTCCAACGTCGCTTCGACATCAACTTTCAAAATGTCAAGAA
GCAGATCACGCAAGGCGCAATTGGCGAAATGCGGACTTTCCGCATCGTAA
GTCGGGATCAGGCCCCACCCCCTGCTGAGTACCTCAAGACAAGCGGCGGC
ATCTTTTTGGACATGAGCAGCCACGATTTTGATATGGCTCGTTTCTTGGT
GGGGAGCGAGATTGAGGAGATCTACGTGAAAGGAGCCTCGTGGGTGCCCG
AGGCTAAGGCGGCAGGGGACCTGGACACTCTGTGA
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Coding sequence (CDS) from alignment at chr9:356718..357452-

>NO09G01090.1 ID=NO09G01090.1|Name=NO09G01090.1|organism=Nannochloropsis oceanica|type=CDS|length=735bp|location=Sequence derived from alignment at chr9:356718..357452- (Nannochloropsis oceanica)
ATGGCCTTCAAGCAGGCCGTCGTCGTCCTTCTAAGTCTCGCCTTCCATTT
CCCGGTCCTAACTTGGGGCTTCTTTCTCCGCATGTCCCGAACACCGTTGG
GAGTAGGCGTCGTTGGCTGCGGGCGCATCGGACAGATACACGGCAATACC
CTCGCTTTCCACACGCCAGGCGCGCGGCTTGTGGCCATTACGGACCCCTT
CGAGGAGATGGGTAAGAAGTTAATAGGACAAACGGGTGGCATGCCCACCT
ACCACAAGGACTACTTCGAGCTGCTTGACCGCGACGATGTGCATGCCGTG
GTGGTGGCTTCACCCACGCCCTGCCACGTGGAGCAAATCATGTCGGCCGT
CGAGCGTGGCAAACACGACTTCTGTGAGAAACCGATCTCGAACGATCTCT
CTGCTATTGACGCCTGCACTCAAGCTGCGGCTAAGGCGGGCACCAAGCTC
ATCCTCGGCTTCCAACGTCGCTTCGACATCAACTTTCAAAATGTCAAGAA
GCAGATCACGCAAGGCGCAATTGGCGAAATGCGGACTTTCCGCATCGTAA
GTCGGGATCAGGCCCCACCCCCTGCTGAGTACCTCAAGACAAGCGGCGGC
ATCTTTTTGGACATGAGCAGCCACGATTTTGATATGGCTCGTTTCTTGGT
GGGGAGCGAGATTGAGGAGATCTACGTGAAAGGAGCCTCGTGGGTGCCCG
AGGCTAAGGCGGCAGGGGACCTGGACACTCTGTGA
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Synonyms
Publications