NO09G01060.1, NO09G01060.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO09G01060.1
Unique Name	NO09G01060.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1867
Alignment location	chr9:353022..355460 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr9	genome	chr9:353022..355460 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO09G01060.1 vs.
Match: EWM27694.1 (ac transferase [Nannochloropsis gaditana])

HSP 1 Score: 713.8 bits (1841), Expect = 4.300e-202
Identity = 344/495 (69.49%), Postives = 394/495 (79.60%), Query Frame = 0

Query:   15 LLLLLLGVMELVPAEPGKWGKSAVFVKGQWTPFDENDEAGVPQPYPPRTDSWMQNDTSIMVSISSFRDYRCPKTLYNLFTKATNPNRVFAGVVQQNSHDDADCLYGYCEMIKEERGLEPKTPATGPAAKVLENCPHADQVRMLRVSSEDAKGPTYGRYLGSKLLGSEEFCMQIDAHMDFEDDWDKQLLDMWGLTNNEYGVLTTYVPNFDQLHLNLNNRYEVPQICKVLYTKPENMVRNEQATNCIWLSKPKLTASWAAGFSFNKCHADLKAPYDPHLPSLFDGEEYSKYARMWTRGYDTYTPHRSIVYHDYTHGPQTKRANAWSRKHRELKRSHDRLRTLLGDPDAHIKRDTPEAKEMLGRWDLGEKRSLNQLIAFTGVDTRNSKIDFDNCGKLQWVPFEEGEDDDWYVEDRREAQAKAKRISDKTRALAGMRGKRVSDKKGRGSKGSITGG----QARHGA-GGVHGLDERLAIPEGGGAVFILAICLIAFAAV 505
            LLLLLL            +GK+AVF+ G+WT FDEND+AGVPQPYPP+TDSW  NDTSIMVSISSFRDYRCPKTLYNLFTKA NP+RV+AGVVQQN+  D DCLY YCE IKEERG+ P   A  P  ++ +NCPHADQV+MLRV +EDAKGPTYGRYLGS L+G EEFCMQIDAHMDFED WDKQLLDMWGL NNEYGVLTTYVPN DQLH+NLN R+EVPQ+C+V YT  E MVRNEQATNCIWL KPKLT++WAAGF+F+KCHADLK PYDPHLPSLFDGEEYSKYAR+WTRGYDTYTPHRS+VYHDYTHG   K ANAWSRK+RELK SH+RLRTLLG   A + R+TP A EMLGRWDLG+KRSLNQLIAFTG DTR +K+DF++CGKLQWVPF+EG+DDDWY E    A+ +    ++  R  + + GK     +G G +GS  GG    QAR  A GGVHGL E+LAIP    A  + A+ ++  AAV
Sbjct:   26 LLLLLLASASGEAQNENSFGKAAVFMNGRWTQFDENDDAGVPQPYPPKTDSWTLNDTSIMVSISSFRDYRCPKTLYNLFTKAANPDRVYAGVVQQNNAGDVDCLYDYCEKIKEERGIGPDASAADPNLRITQNCPHADQVKMLRVQAEDAKGPTYGRYLGSYLVGDEEFCMQIDAHMDFEDHWDKQLLDMWGLANNEYGVLTTYVPNLDQLHVNLNGRFEVPQVCRVTYTPGEKMVRNEQATNCIWLRKPKLTSTWAAGFAFSKCHADLKTPYDPHLPSLFDGEEYSKYARLWTRGYDTYTPHRSVVYHDYTHGATEKDANAWSRKYRELKHSHERLRTLLGYSGAVVGRETPAAAEMLGRWDLGKKRSLNQLIAFTGADTRETKVDFNSCGKLQWVPFDEGDDDDWYSESTSAARRRRSAKAESARVASRLFGK---GARGEGEQGSGRGGEGSRQARAWAGGGVHGLSEQLAIPRVSRAHLLWALSILIIAAV 517

The following BLAST results are available for this feature:

BLAST of NO09G01060.1 vs.

BLAST of NO09G01060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27694.1	4.300e-202	69.49	ac transferase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO09G01060	NO09G01060	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO09G01060.1	NO09G01060.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO09G01060.1.cds1	NO09G01060.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G01060.1.cds2	NO09G01060.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G01060.1.cds3	NO09G01060.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G01060.1.cds4	NO09G01060.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr9:353022..355460+
coding sequence from alignment at chr9:353022..355460+

mRNA sequence

>NO09G01060.1 ID=NO09G01060.1|Name=NO09G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1867bp
AGGTAGACACGCATCGCTGTCCTATCCACTATGCCAAGAGGAAGGACGGC
GGTGCCCTATTCATATGGGATGCTGCTGTTGTTGTTGTTAGGAGTAATGG
AACTCGTGCCGGCGGAGCCCGGCAAATGGGGCAAATCGGCAGTCTTCGTC
AAGGGACAGTGGACGCCATTCGACGAGAACGACGAGGCTGGCGTGCCACA
ACCTTATCCACCACGGACGGACTCGTGGATGCAGAATGACACAAGCATCA
TGGTCTCCATCTCCTCATTTCGGGATTACCGGTGCCCCAAGACGCTCTAC
AACCTTTTTACCAAAGCCACCAACCCCAACCGCGTCTTCGCAGGTGTTGT
TCAGCAAAACAGCCACGATGACGCCGACTGCCTCTATGGCTATTGCGAGA
TGATCAAAGAAGAACGTGGACTTGAGCCGAAAACGCCCGCAACAGGACCG
GCAGCCAAGGTCTTGGAGAATTGCCCTCACGCAGATCAAGTTAGGATGCT
GCGCGTGTCTAGTGAAGATGCCAAAGGGCCAACATATGGGCGGTATCTAG
GGAGCAAGCTGCTGGGCAGTGAGGAATTTTGCATGCAAATCGATGCGCAT
ATGGATTTCGAGGATGACTGGGATAAGCAGCTTTTGGACATGTGGGGACT
GACGAACAATGAGTACGGCGTGCTCACCACCTATGTGCCCAACTTCGACC
AGCTCCACCTCAACCTCAATAACCGATATGAAGTCCCGCAGATCTGTAAA
GTTCTGTACACAAAGCCCGAAAACATGGTTCGTAACGAACAAGCGACAAA
TTGCATTTGGCTGAGCAAACCCAAGCTGACGGCATCGTGGGCGGCAGGCT
TTTCGTTTAACAAGTGCCACGCGGATTTGAAGGCGCCGTATGACCCGCAT
CTACCCTCCTTGTTCGACGGCGAGGAGTATTCGAAATATGCAAGGATGTG
GACACGTGGCTACGATACCTACACGCCGCACCGAAGCATCGTCTACCACG
ACTATACCCATGGTCCACAGACCAAGCGCGCCAACGCGTGGTCTCGGAAA
CATCGCGAGCTAAAACGTTCGCATGACAGGCTCCGCACCCTCCTCGGTGA
TCCCGACGCGCATATCAAGAGAGATACGCCTGAGGCGAAAGAGATGTTGG
GGAGGTGGGATTTGGGTGAAAAGAGGAGTTTAAACCAATTGATTGCGTTC
ACGGGGGTTGATACTCGGAATTCTAAGATTGATTTTGATAATTGTGGGAA
ATTGCAGTGGGTGCCCTTTGAGGAGGGGGAGGACGATGATTGGTACGTGG
AAGATAGGAGGGAGGCCCAGGCCAAGGCGAAGAGAATATCGGATAAAACT
AGGGCGCTCGCGGGCATGAGGGGGAAGCGGGTTTCAGATAAGAAGGGGAG
AGGGTCGAAGGGCAGCATCACTGGTGGACAAGCACGGCATGGTGCAGGCG
GTGTGCATGGATTGGACGAGCGCCTGGCGATTCCTGAAGGGGGTGGAGCT
GTGTTTATTTTGGCGATATGTTTGATTGCTTTTGCGGCAGTGGTTTGCGC
GTGCATCTACACGGGTAGAGTACTGCGGTTCCCTGAGGGAAAACTTGAAA
AGGGGGGATGGGAAGGAGGGAGGGCATGGGAAGGGGTAGATGCAGGATTG
CTGGCTGACTTTGGGGGGCTGGGAAGCAAGGTCGTAAAGATGATATAACG
AAGAATGTATTTGTGCGTATTTTGTTTGTAGGAAGTTTCAGTAATTGGAG
TTTTAAAAATAAAATACGACAATTCCAAAGAGGAGAAATACATGTGATGG
CATCAATAGGAATCGAAACAGGAGAAAAAGCGCCAAAAACTTTAATAAGA
CGGCATTGGACATGATT

protein sequence of NO09G01060.1

>NO09G01060.1-protein ID=NO09G01060.1-protein|Name=NO09G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp
MPRGRTAVPYSYGMLLLLLLGVMELVPAEPGKWGKSAVFVKGQWTPFDEN
DEAGVPQPYPPRTDSWMQNDTSIMVSISSFRDYRCPKTLYNLFTKATNPN
RVFAGVVQQNSHDDADCLYGYCEMIKEERGLEPKTPATGPAAKVLENCPH
ADQVRMLRVSSEDAKGPTYGRYLGSKLLGSEEFCMQIDAHMDFEDDWDKQ
LLDMWGLTNNEYGVLTTYVPNFDQLHLNLNNRYEVPQICKVLYTKPENMV
RNEQATNCIWLSKPKLTASWAAGFSFNKCHADLKAPYDPHLPSLFDGEEY
SKYARMWTRGYDTYTPHRSIVYHDYTHGPQTKRANAWSRKHRELKRSHDR
LRTLLGDPDAHIKRDTPEAKEMLGRWDLGEKRSLNQLIAFTGVDTRNSKI
DFDNCGKLQWVPFEEGEDDDWYVEDRREAQAKAKRISDKTRALAGMRGKR
VSDKKGRGSKGSITGGQARHGAGGVHGLDERLAIPEGGGAVFILAICLIA
FAAVVCACIYTGRVLRFPEGKLEKGGWEGGRAWEGVDAGLLADFGGLGSK
VVKMI*

mRNA from alignment at chr9:353022..355460+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO09G01060.1 ID=NO09G01060.1|Name=NO09G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2439bp|location=Sequence derived from alignment at chr9:353022..355460+ (Nannochloropsis oceanica)
AGGTAGACACGCATCGCTGTCCTATCCACTATGCCAAGAGGAAGGACGGC
GGTGCCCTATTCATATGGGATGCTGCTGTTGTTGTTGTTAGGAGTAATGG
AACTCGTGCCGGCGGAGCCCGGCAAATGGGGCAAATCGGCAGTCTTCGTC
AAGGGACAGTGGACGCCATTCGACGAGAACGACGAGGCTGGCGTGCCACA
ACCTTATCCACCACGGACGGACTCGTGGATGCAGAATGACACAAGCATCA
TGGTCTCCATCTCCTCATTTCGGGATTACCGGTGCCCCAAGACGCTCTAC
AACCTTTTTACGTACGCACTGAGGGAAGAGAGGGAAAATAATTGGGATGC
ACATGTCTTGTACGAATTAATTGATGTGTGCATGCTTTTCAATTCTCGCT
CGGTCCCAACTTTGGAAGAAGATTCAGAGTAAAGTTTGAAATAATAGCGT
GGGGGGGGTGGAGTGGGGGGGGGACCTTGCACCTCCTCGCCATGTCGTTC
CACACCCTGAACAAGGTTTCGCCTTCATTGTTTCTTACCTCAAATCGCTG
TCTTCCCTTCCCTTTCCAATATGCCGCTCCACATCCCCAACCACAGCAAA
GCCACCAACCCCAACCGCGTCTTCGCAGGTGTTGTTCAGCAAAACAGCCA
CGATGACGCCGACTGCCTCTATGGCTATTGCGAGATGATCAAAGAAGAAC
GTGGACTTGAGCCGAAAACGCCCGCAACAGGACCGGCAGCCAAGGTCTTG
GAGAATTGCCCTCACGCAGATCAAGTTAGGATGCTGCGCGTGTCTAGTGA
AGATGCCAAAGGGCCAACATATGGGCGGTATCTAGGGAGCAAGCTGCTGG
GCAGTGAGGAATTTTGCATGCAAATCGATGCGCATATGGATTTCGAGGAT
GACTGGGATAAGCAGCTTTTGGACATGTGGGGTGAGTGGGTATAAGGAGT
GTTCGTGTGTATGTGTCTGTGTGTGGAGCATATACGCGGCAGAGCATGGG
TGGTTGTTGCTGTTGCAATTTTGCAAAATTCTCACACTATCCCCCCTTCT
CCTTCACACTCTTTCCCCCTCCAGGACTGACGAACAATGAGTACGGCGTG
CTCACCACCTATGTGCCCAACTTCGACCAGCTCCACCTCAACCTCAATAA
CCGATATGAAGTCCCGCAGATCTGTAAAGTTCTGTACACAAAGCCCGAAA
ACATGGTTCGTAACGAACAAGCGACAAATTGCATTTGGCTGAGCAAACCC
AAGCTGACGGCATCGTGGGCGGCAGGCTTTTCGTTTAACAAGTGCCACGC
GGATTTGAAGGCGCCGTATGACCCGCATCTACCCTCCTTGTTCGACGGCG
AGGAGTATTCGAAATATGCAAGGATGTGGACACGGTACGTCAATCCCTCT
TCATTTTGACACTTCATACGAAGTCCTGTTCTCCCTCCTCTGCCCCCCAC
CTCCCCCCCCCTGTCCGAGTGCAAGTAAAGTATATACCTTTTTAACCCCT
TCTCTCTTAATCCCCGTTTCTACCCCAGTGGCTACGATACCTACACGCCG
CACCGAAGCATCGTCTACCACGACTATACCCATGGTCCACAGACCAAGCG
CGCCAACGCGTGGTCTCGGAAACATCGCGAGCTAAAACGTTCGCATGACA
GGCTCCGCACCCTCCTCGGTGATCCCGACGCGCATATCAAGAGAGATACG
CCTGAGGCGAAAGAGATGTTGGGGAGGTGGGATTTGGGTGAAAAGAGGAG
TTTAAACCAATTGATTGCGTTCACGGGGGTTGATACTCGGAATTCTAAGA
TTGATTTTGATAATTGTGGGAAATTGCAGTGGGTGCCCTTTGAGGAGGGG
GAGGACGATGATTGGTACGTGGAAGATAGGAGGGAGGCCCAGGCCAAGGC
GAAGAGAATATCGGATAAAACTAGGGCGCTCGCGGGCATGAGGGGGAAGC
GGGTTTCAGATAAGAAGGGGAGAGGGTCGAAGGGCAGCATCACTGGTGGA
CAAGCACGGCATGGTGCAGGCGGTGTGCATGGATTGGACGAGCGCCTGGC
GATTCCTGAAGGGGGTGGAGCTGTGTTTATTTTGGCGATATGTTTGATTG
CTTTTGCGGCAGTGGTTTGCGCGTGCATCTACACGGGTAGAGTACTGCGG
TTCCCTGAGGGAAAACTTGAAAAGGGGGGATGGGAAGGAGGGAGGGCATG
GGAAGGGGTAGATGCAGGATTGCTGGCTGACTTTGGGGGGCTGGGAAGCA
AGGTCGTAAAGATGATATAACGAAGAATGTATTTGTGCGTATTTTGTTTG
TAGGAAGTTTCAGTAATTGGAGTTTTAAAAATAAAATACGACAATTCCAA
AGAGGAGAAATACATGTGATGGCATCAATAGGAATCGAAACAGGAGAAAA
AGCGCCAAAAACTTTAATAAGACGGCATTGGACATGATT

Coding sequence (CDS) from alignment at chr9:353022..355460+

>NO09G01060.1 ID=NO09G01060.1|Name=NO09G01060.1|organism=Nannochloropsis oceanica|type=CDS|length=1668bp|location=Sequence derived from alignment at chr9:353022..355460+ (Nannochloropsis oceanica)
ATGCCAAGAGGAAGGACGGCGGTGCCCTATTCATATGGGATGCTGCTGTT
GTTGTTGTTAGGAGTAATGGAACTCGTGCCGGCGGAGCCCGGCAAATGGG
GCAAATCGGCAGTCTTCGTCAAGGGACAGTGGACGCCATTCGACGAGAAC
GACGAGGCTGGCGTGCCACAACCTTATCCACCACGGACGGACTCGTGGAT
GCAGAATGACACAAGCATCATGGTCTCCATCTCCTCATTTCGGGATTACC
GGTGCCCCAAGACGCTCTACAACCTTTTTACCAAAGCCACCAACCCCAAC
CGCGTCTTCGCAGGTGTTGTTCAGCAAAACAGCCACGATGACGCCGACTG
CCTCTATGGCTATTGCGAGATGATCAAAGAAGAACGTGGACTTGAGCCGA
AAACGCCCGCAACAGGACCGGCAGCCAAGGTCTTGGAGAATTGCCCTCAC
GCAGATCAAGTTAGGATGCTGCGCGTGTCTAGTGAAGATGCCAAAGGGCC
AACATATGGGCGGTATCTAGGGAGCAAGCTGCTGGGCAGTGAGGAATTTT
GCATGCAAATCGATGCGCATATGGATTTCGAGGATGACTGGGATAAGCAG
CTTTTGGACATGTGGGGACTGACGAACAATGAGTACGGCGTGCTCACCAC
CTATGTGCCCAACTTCGACCAGCTCCACCTCAACCTCAATAACCGATATG
AAGTCCCGCAGATCTGTAAAGTTCTGTACACAAAGCCCGAAAACATGGTT
CGTAACGAACAAGCGACAAATTGCATTTGGCTGAGCAAACCCAAGCTGAC
GGCATCGTGGGCGGCAGGCTTTTCGTTTAACAAGTGCCACGCGGATTTGA
AGGCGCCGTATGACCCGCATCTACCCTCCTTGTTCGACGGCGAGGAGTAT
TCGAAATATGCAAGGATGTGGACACGTGGCTACGATACCTACACGCCGCA
CCGAAGCATCGTCTACCACGACTATACCCATGGTCCACAGACCAAGCGCG
CCAACGCGTGGTCTCGGAAACATCGCGAGCTAAAACGTTCGCATGACAGG
CTCCGCACCCTCCTCGGTGATCCCGACGCGCATATCAAGAGAGATACGCC
TGAGGCGAAAGAGATGTTGGGGAGGTGGGATTTGGGTGAAAAGAGGAGTT
TAAACCAATTGATTGCGTTCACGGGGGTTGATACTCGGAATTCTAAGATT
GATTTTGATAATTGTGGGAAATTGCAGTGGGTGCCCTTTGAGGAGGGGGA
GGACGATGATTGGTACGTGGAAGATAGGAGGGAGGCCCAGGCCAAGGCGA
AGAGAATATCGGATAAAACTAGGGCGCTCGCGGGCATGAGGGGGAAGCGG
GTTTCAGATAAGAAGGGGAGAGGGTCGAAGGGCAGCATCACTGGTGGACA
AGCACGGCATGGTGCAGGCGGTGTGCATGGATTGGACGAGCGCCTGGCGA
TTCCTGAAGGGGGTGGAGCTGTGTTTATTTTGGCGATATGTTTGATTGCT
TTTGCGGCAGTGGTTTGCGCGTGCATCTACACGGGTAGAGTACTGCGGTT
CCCTGAGGGAAAACTTGAAAAGGGGGGATGGGAAGGAGGGAGGGCATGGG
AAGGGGTAGATGCAGGATTGCTGGCTGACTTTGGGGGGCTGGGAAGCAAG
GTCGTAAAGATGATATAA

Synonyms

Publications