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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:331722..333065 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G00980.1 vs.
Match: EWM27689.1 (26s proteasome subunit 4 [Nannochloropsis gaditana]) HSP 1 Score: 840.9 bits (2171), Expect = 1.900e-240 Identity = 435/447 (97.32%), Postives = 441/447 (98.66%), Query Frame = 0
Query: 1 MGQGAPGGMPPPGGQGPGQGEQKKEDKTKKKKFEPRPAARSGRRRRRKGPSAAVRIPQVFPTSKCKLRLLKLDRIKDFLLLEEEFIRNQEVFRPHEEKDQEERAKVEDLRGSPLAVGNLEEMIDDNHAIVSSSVGPEYYVGVLSFVNQDLLEPGCTVLLHNKVMAVVGILSDDTDPMVSVMKVEKAPLESYADIGGLESQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGSKRYDSNSGGTREIQRTMLELLNQLDGFDERGDVKVIMATNKIESLDPALIRPGRIDRKIEFPLPDIKTKRRIFGIHTGRMTMSDDVDLEVFVMAKDELSGADIKAVCTEAGLLALRERRMKVTQEDFVKAKEKALYRKKGNIPVSMYL 448
MGQG PGGMPPPGGQ PGQG+QKKEDK KKKKFEPRPA RSGRRRRRKGPSAAVRIPQVFPTSKCKLRLLKLDRIKDFLLLE EFIRNQEVFRPHEEKDQEERAKVE+LRGSPLAVGNLEEMIDDNHAIVSSSVGPEYYVGVLSFVNQDLLEPG TVLLHNKVMAVVGILSDDTDPMVSVMKVEKAPLESYADIGGLESQIQEIKE+VELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGSKRYDSNSGGTREIQRTMLELLNQLDGFDERGDVKVIMATNKIESLDPALIRPGRIDRKIEFPLPDIKTKRRIFGIHTGRMT+S+DVDLEVFVMAKDELSGADIKAVCTEAGLLALRERRMKVTQ+DFVKAKEKALYRKKGNIPVSMYL
Sbjct: 1 MGQGTPGGMPPPGGQLPGQGDQKKEDKAKKKKFEPRPAVRSGRRRRRKGPSAAVRIPQVFPTSKCKLRLLKLDRIKDFLLLEGEFIRNQEVFRPHEEKDQEERAKVEELRGSPLAVGNLEEMIDDNHAIVSSSVGPEYYVGVLSFVNQDLLEPGSTVLLHNKVMAVVGILSDDTDPMVSVMKVEKAPLESYADIGGLESQIQEIKESVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGSKRYDSNSGGTREIQRTMLELLNQLDGFDERGDVKVIMATNKIESLDPALIRPGRIDRKIEFPLPDIKTKRRIFGIHTGRMTLSEDVDLEVFVMAKDELSGADIKAVCTEAGLLALRERRMKVTQDDFVKAKEKALYRKKGNIPVSMYL 447
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G00980.1 ID=NO09G00980.1|Name=NO09G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp ATGGGACAAGGAGCTCCGGGGGGCATGCCTCCGCCGGGCGGGCAAGGCCC TGGTCAGGGCGAGCAGAAGAAGGAGGACAAGACCAAGAAAAAGAAATTTG AACCCCGCCCGGCGGCTAGGAGCGGGCGTCGCCGTCGTCGCAAGGGCCCT TCCGCAGCCGTTCGCATCCCGCAAGTTTTTCCCACGTCCAAGTGCAAGCT ACGACTGCTCAAGCTTGACCGTATCAAGGATTTCTTATTGCTGGAGGAGG AGTTTATCCGCAACCAGGAAGTGTTTCGTCCCCATGAGGAGAAGGACCAG GAGGAACGGGCCAAGGTAGAGGACCTGCGGGGCAGTCCCTTGGCGGTTGG GAACCTGGAGGAGATGATCGACGACAACCACGCAATTGTCTCATCCTCGG TAGGCCCCGAGTACTACGTGGGCGTGCTGTCTTTTGTGAACCAGGACTTG CTGGAACCCGGGTGCACGGTGCTGCTGCACAACAAGGTGATGGCGGTGGT GGGCATCTTGTCAGACGACACAGACCCTATGGTTTCTGTCATGAAGGTGG AGAAGGCCCCCCTGGAATCCTATGCCGACATTGGCGGGCTGGAGTCGCAG ATCCAGGAGATCAAGGAGGCGGTAGAGCTGCCCTTGACCCACCCAGAGCT TTACGAGGACATAGGTATTCGGCCCCCCAAGGGCGTCATTCTGTATGGCG AGCCAGGCACGGGGAAGACCTTACTAGCCAAGGCCGTAGCCAACCAGACA TCGGCAACATTCTTGCGCGTGGTGGGCTCGGAGCTAATTCAGAAGTATCT AGGTGATGGTCCCAAGTTGGTGCGGGAGCTCTTTCGGGTGGCGGACGACT TGTCACCGTCAATTGTGTTTATCGATGAGATTGACGCGGTGGGTTCCAAG CGGTATGATTCCAACTCGGGGGGCACGCGGGAGATCCAGCGGACGATGTT GGAGTTGTTGAACCAGCTGGATGGTTTTGATGAGCGGGGAGACGTTAAGG TGATCATGGCTACTAATAAAATTGAGTCCCTCGATCCTGCCCTTATTCGT CCCGGGCGAATTGATCGAAAGATTGAATTTCCCCTTCCAGATATCAAGAC AAAGCGTCGAATTTTCGGGATCCACACGGGGCGGATGACCATGAGCGATG ACGTGGACTTGGAAGTGTTCGTCATGGCGAAGGACGAGCTGAGCGGCGCG GACATCAAGGCGGTGTGCACCGAGGCGGGGCTGTTGGCGCTGCGGGAGAG GAGGATGAAGGTGACTCAGGAGGACTTTGTCAAGGCCAAGGAGAAGGCGT TGTACCGGAAGAAGGGCAACATCCCCGTCTCTATGTACTTGTAA back to topprotein sequence of NO09G00980.1 >NO09G00980.1-protein ID=NO09G00980.1-protein|Name=NO09G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp MGQGAPGGMPPPGGQGPGQGEQKKEDKTKKKKFEPRPAARSGRRRRRKGP SAAVRIPQVFPTSKCKLRLLKLDRIKDFLLLEEEFIRNQEVFRPHEEKDQ EERAKVEDLRGSPLAVGNLEEMIDDNHAIVSSSVGPEYYVGVLSFVNQDL LEPGCTVLLHNKVMAVVGILSDDTDPMVSVMKVEKAPLESYADIGGLESQ IQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANQT SATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGSK RYDSNSGGTREIQRTMLELLNQLDGFDERGDVKVIMATNKIESLDPALIR PGRIDRKIEFPLPDIKTKRRIFGIHTGRMTMSDDVDLEVFVMAKDELSGA DIKAVCTEAGLLALRERRMKVTQEDFVKAKEKALYRKKGNIPVSMYL* back to topmRNA from alignment at chr9:331722..333065+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G00980.1 ID=NO09G00980.1|Name=NO09G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp|location=Sequence derived from alignment at chr9:331722..333065+ (Nannochloropsis oceanica) ATGGGACAAGGAGCTCCGGGGGGCATGCCTCCGCCGGGCGGGCAAGGCCC
TGGTCAGGGCGAGCAGAAGAAGGAGGACAAGACCAAGAAAAAGAAATTTG
AACCCCGCCCGGCGGCTAGGAGCGGGCGTCGCCGTCGTCGCAAGGGCCCT
TCCGCAGCCGTTCGCATCCCGCAAGTTTTTCCCACGTCCAAGTGCAAGCT
ACGACTGCTCAAGCTTGACCGTATCAAGGATTTCTTATTGCTGGAGGAGG
AGTTTATCCGCAACCAGGAAGTGTTTCGTCCCCATGAGGAGAAGGACCAG
GAGGAACGGGCCAAGGTAGAGGACCTGCGGGGCAGTCCCTTGGCGGTTGG
GAACCTGGAGGAGATGATCGACGACAACCACGCAATTGTCTCATCCTCGG
TAGGCCCCGAGTACTACGTGGGCGTGCTGTCTTTTGTGAACCAGGACTTG
CTGGAACCCGGGTGCACGGTGCTGCTGCACAACAAGGTGATGGCGGTGGT
GGGCATCTTGTCAGACGACACAGACCCTATGGTTTCTGTCATGAAGGTGG
AGAAGGCCCCCCTGGAATCCTATGCCGACATTGGCGGGCTGGAGTCGCAG
ATCCAGGAGATCAAGGAGGCGGTAGAGCTGCCCTTGACCCACCCAGAGCT
TTACGAGGACATAGGTATTCGGCCCCCCAAGGGCGTCATTCTGTATGGCG
AGCCAGGCACGGGGAAGACCTTACTAGCCAAGGCCGTAGCCAACCAGACA
TCGGCAACATTCTTGCGCGTGGTGGGCTCGGAGCTAATTCAGAAGTATCT
AGGTGATGGTCCCAAGTTGGTGCGGGAGCTCTTTCGGGTGGCGGACGACT
TGTCACCGTCAATTGTGTTTATCGATGAGATTGACGCGGTGGGTTCCAAG
CGGTATGATTCCAACTCGGGGGGCACGCGGGAGATCCAGCGGACGATGTT
GGAGTTGTTGAACCAGCTGGATGGTTTTGATGAGCGGGGAGACGTTAAGG
TGATCATGGCTACTAATAAAATTGAGTCCCTCGATCCTGCCCTTATTCGT
CCCGGGCGAATTGATCGAAAGATTGAATTTCCCCTTCCAGATATCAAGAC
AAAGCGTCGAATTTTCGGGATCCACACGGGGCGGATGACCATGAGCGATG
ACGTGGACTTGGAAGTGTTCGTCATGGCGAAGGACGAGCTGAGCGGCGCG
GACATCAAGGCGGTGTGCACCGAGGCGGGGCTGTTGGCGCTGCGGGAGAG
GAGGATGAAGGTGACTCAGGAGGACTTTGTCAAGGCCAAGGAGAAGGCGT
TGTACCGGAAGAAGGGCAACATCCCCGTCTCTATGTACTTGTAA back to topCoding sequence (CDS) from alignment at chr9:331722..333065+ >NO09G00980.1 ID=NO09G00980.1|Name=NO09G00980.1|organism=Nannochloropsis oceanica|type=CDS|length=1344bp|location=Sequence derived from alignment at chr9:331722..333065+ (Nannochloropsis oceanica) ATGGGACAAGGAGCTCCGGGGGGCATGCCTCCGCCGGGCGGGCAAGGCCC TGGTCAGGGCGAGCAGAAGAAGGAGGACAAGACCAAGAAAAAGAAATTTG AACCCCGCCCGGCGGCTAGGAGCGGGCGTCGCCGTCGTCGCAAGGGCCCT TCCGCAGCCGTTCGCATCCCGCAAGTTTTTCCCACGTCCAAGTGCAAGCT ACGACTGCTCAAGCTTGACCGTATCAAGGATTTCTTATTGCTGGAGGAGG AGTTTATCCGCAACCAGGAAGTGTTTCGTCCCCATGAGGAGAAGGACCAG GAGGAACGGGCCAAGGTAGAGGACCTGCGGGGCAGTCCCTTGGCGGTTGG GAACCTGGAGGAGATGATCGACGACAACCACGCAATTGTCTCATCCTCGG TAGGCCCCGAGTACTACGTGGGCGTGCTGTCTTTTGTGAACCAGGACTTG CTGGAACCCGGGTGCACGGTGCTGCTGCACAACAAGGTGATGGCGGTGGT GGGCATCTTGTCAGACGACACAGACCCTATGGTTTCTGTCATGAAGGTGG AGAAGGCCCCCCTGGAATCCTATGCCGACATTGGCGGGCTGGAGTCGCAG ATCCAGGAGATCAAGGAGGCGGTAGAGCTGCCCTTGACCCACCCAGAGCT TTACGAGGACATAGGTATTCGGCCCCCCAAGGGCGTCATTCTGTATGGCG AGCCAGGCACGGGGAAGACCTTACTAGCCAAGGCCGTAGCCAACCAGACA TCGGCAACATTCTTGCGCGTGGTGGGCTCGGAGCTAATTCAGAAGTATCT AGGTGATGGTCCCAAGTTGGTGCGGGAGCTCTTTCGGGTGGCGGACGACT TGTCACCGTCAATTGTGTTTATCGATGAGATTGACGCGGTGGGTTCCAAG CGGTATGATTCCAACTCGGGGGGCACGCGGGAGATCCAGCGGACGATGTT GGAGTTGTTGAACCAGCTGGATGGTTTTGATGAGCGGGGAGACGTTAAGG TGATCATGGCTACTAATAAAATTGAGTCCCTCGATCCTGCCCTTATTCGT CCCGGGCGAATTGATCGAAAGATTGAATTTCCCCTTCCAGATATCAAGAC AAAGCGTCGAATTTTCGGGATCCACACGGGGCGGATGACCATGAGCGATG ACGTGGACTTGGAAGTGTTCGTCATGGCGAAGGACGAGCTGAGCGGCGCG GACATCAAGGCGGTGTGCACCGAGGCGGGGCTGTTGGCGCTGCGGGAGAG GAGGATGAAGGTGACTCAGGAGGACTTTGTCAAGGCCAAGGAGAAGGCGT TGTACCGGAAGAAGGGCAACATCCCCGTCTCTATGTACTTGTAA back to top
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