NO09G00980.1, NO09G00980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00980.1
Unique NameNO09G00980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1344
Alignment locationchr9:331722..333065 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:331722..333065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G00980.1 vs.
Match: EWM27689.1 (26s proteasome subunit 4 [Nannochloropsis gaditana])

HSP 1 Score: 840.9 bits (2171), Expect = 1.900e-240
Identity = 435/447 (97.32%), Postives = 441/447 (98.66%), Query Frame = 0
Query:    1 MGQGAPGGMPPPGGQGPGQGEQKKEDKTKKKKFEPRPAARSGRRRRRKGPSAAVRIPQVFPTSKCKLRLLKLDRIKDFLLLEEEFIRNQEVFRPHEEKDQEERAKVEDLRGSPLAVGNLEEMIDDNHAIVSSSVGPEYYVGVLSFVNQDLLEPGCTVLLHNKVMAVVGILSDDTDPMVSVMKVEKAPLESYADIGGLESQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGSKRYDSNSGGTREIQRTMLELLNQLDGFDERGDVKVIMATNKIESLDPALIRPGRIDRKIEFPLPDIKTKRRIFGIHTGRMTMSDDVDLEVFVMAKDELSGADIKAVCTEAGLLALRERRMKVTQEDFVKAKEKALYRKKGNIPVSMYL 448
            MGQG PGGMPPPGGQ PGQG+QKKEDK KKKKFEPRPA RSGRRRRRKGPSAAVRIPQVFPTSKCKLRLLKLDRIKDFLLLE EFIRNQEVFRPHEEKDQEERAKVE+LRGSPLAVGNLEEMIDDNHAIVSSSVGPEYYVGVLSFVNQDLLEPG TVLLHNKVMAVVGILSDDTDPMVSVMKVEKAPLESYADIGGLESQIQEIKE+VELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGSKRYDSNSGGTREIQRTMLELLNQLDGFDERGDVKVIMATNKIESLDPALIRPGRIDRKIEFPLPDIKTKRRIFGIHTGRMT+S+DVDLEVFVMAKDELSGADIKAVCTEAGLLALRERRMKVTQ+DFVKAKEKALYRKKGNIPVSMYL
Sbjct:    1 MGQGTPGGMPPPGGQLPGQGDQKKEDKAKKKKFEPRPAVRSGRRRRRKGPSAAVRIPQVFPTSKCKLRLLKLDRIKDFLLLEGEFIRNQEVFRPHEEKDQEERAKVEELRGSPLAVGNLEEMIDDNHAIVSSSVGPEYYVGVLSFVNQDLLEPGSTVLLHNKVMAVVGILSDDTDPMVSVMKVEKAPLESYADIGGLESQIQEIKESVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGSKRYDSNSGGTREIQRTMLELLNQLDGFDERGDVKVIMATNKIESLDPALIRPGRIDRKIEFPLPDIKTKRRIFGIHTGRMTLSEDVDLEVFVMAKDELSGADIKAVCTEAGLLALRERRMKVTQDDFVKAKEKALYRKKGNIPVSMYL 447          
The following BLAST results are available for this feature:
BLAST of NO09G00980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27689.11.900e-24097.3226s proteasome subunit 4 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00980NO09G00980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00980.1NO09G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00980.1.cds1NO09G00980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00980.1 ID=NO09G00980.1|Name=NO09G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp
ATGGGACAAGGAGCTCCGGGGGGCATGCCTCCGCCGGGCGGGCAAGGCCC
TGGTCAGGGCGAGCAGAAGAAGGAGGACAAGACCAAGAAAAAGAAATTTG
AACCCCGCCCGGCGGCTAGGAGCGGGCGTCGCCGTCGTCGCAAGGGCCCT
TCCGCAGCCGTTCGCATCCCGCAAGTTTTTCCCACGTCCAAGTGCAAGCT
ACGACTGCTCAAGCTTGACCGTATCAAGGATTTCTTATTGCTGGAGGAGG
AGTTTATCCGCAACCAGGAAGTGTTTCGTCCCCATGAGGAGAAGGACCAG
GAGGAACGGGCCAAGGTAGAGGACCTGCGGGGCAGTCCCTTGGCGGTTGG
GAACCTGGAGGAGATGATCGACGACAACCACGCAATTGTCTCATCCTCGG
TAGGCCCCGAGTACTACGTGGGCGTGCTGTCTTTTGTGAACCAGGACTTG
CTGGAACCCGGGTGCACGGTGCTGCTGCACAACAAGGTGATGGCGGTGGT
GGGCATCTTGTCAGACGACACAGACCCTATGGTTTCTGTCATGAAGGTGG
AGAAGGCCCCCCTGGAATCCTATGCCGACATTGGCGGGCTGGAGTCGCAG
ATCCAGGAGATCAAGGAGGCGGTAGAGCTGCCCTTGACCCACCCAGAGCT
TTACGAGGACATAGGTATTCGGCCCCCCAAGGGCGTCATTCTGTATGGCG
AGCCAGGCACGGGGAAGACCTTACTAGCCAAGGCCGTAGCCAACCAGACA
TCGGCAACATTCTTGCGCGTGGTGGGCTCGGAGCTAATTCAGAAGTATCT
AGGTGATGGTCCCAAGTTGGTGCGGGAGCTCTTTCGGGTGGCGGACGACT
TGTCACCGTCAATTGTGTTTATCGATGAGATTGACGCGGTGGGTTCCAAG
CGGTATGATTCCAACTCGGGGGGCACGCGGGAGATCCAGCGGACGATGTT
GGAGTTGTTGAACCAGCTGGATGGTTTTGATGAGCGGGGAGACGTTAAGG
TGATCATGGCTACTAATAAAATTGAGTCCCTCGATCCTGCCCTTATTCGT
CCCGGGCGAATTGATCGAAAGATTGAATTTCCCCTTCCAGATATCAAGAC
AAAGCGTCGAATTTTCGGGATCCACACGGGGCGGATGACCATGAGCGATG
ACGTGGACTTGGAAGTGTTCGTCATGGCGAAGGACGAGCTGAGCGGCGCG
GACATCAAGGCGGTGTGCACCGAGGCGGGGCTGTTGGCGCTGCGGGAGAG
GAGGATGAAGGTGACTCAGGAGGACTTTGTCAAGGCCAAGGAGAAGGCGT
TGTACCGGAAGAAGGGCAACATCCCCGTCTCTATGTACTTGTAA
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protein sequence of NO09G00980.1

>NO09G00980.1-protein ID=NO09G00980.1-protein|Name=NO09G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MGQGAPGGMPPPGGQGPGQGEQKKEDKTKKKKFEPRPAARSGRRRRRKGP
SAAVRIPQVFPTSKCKLRLLKLDRIKDFLLLEEEFIRNQEVFRPHEEKDQ
EERAKVEDLRGSPLAVGNLEEMIDDNHAIVSSSVGPEYYVGVLSFVNQDL
LEPGCTVLLHNKVMAVVGILSDDTDPMVSVMKVEKAPLESYADIGGLESQ
IQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANQT
SATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGSK
RYDSNSGGTREIQRTMLELLNQLDGFDERGDVKVIMATNKIESLDPALIR
PGRIDRKIEFPLPDIKTKRRIFGIHTGRMTMSDDVDLEVFVMAKDELSGA
DIKAVCTEAGLLALRERRMKVTQEDFVKAKEKALYRKKGNIPVSMYL*
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mRNA from alignment at chr9:331722..333065+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00980.1 ID=NO09G00980.1|Name=NO09G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp|location=Sequence derived from alignment at chr9:331722..333065+ (Nannochloropsis oceanica)
ATGGGACAAGGAGCTCCGGGGGGCATGCCTCCGCCGGGCGGGCAAGGCCC TGGTCAGGGCGAGCAGAAGAAGGAGGACAAGACCAAGAAAAAGAAATTTG AACCCCGCCCGGCGGCTAGGAGCGGGCGTCGCCGTCGTCGCAAGGGCCCT TCCGCAGCCGTTCGCATCCCGCAAGTTTTTCCCACGTCCAAGTGCAAGCT ACGACTGCTCAAGCTTGACCGTATCAAGGATTTCTTATTGCTGGAGGAGG AGTTTATCCGCAACCAGGAAGTGTTTCGTCCCCATGAGGAGAAGGACCAG GAGGAACGGGCCAAGGTAGAGGACCTGCGGGGCAGTCCCTTGGCGGTTGG GAACCTGGAGGAGATGATCGACGACAACCACGCAATTGTCTCATCCTCGG TAGGCCCCGAGTACTACGTGGGCGTGCTGTCTTTTGTGAACCAGGACTTG CTGGAACCCGGGTGCACGGTGCTGCTGCACAACAAGGTGATGGCGGTGGT GGGCATCTTGTCAGACGACACAGACCCTATGGTTTCTGTCATGAAGGTGG AGAAGGCCCCCCTGGAATCCTATGCCGACATTGGCGGGCTGGAGTCGCAG ATCCAGGAGATCAAGGAGGCGGTAGAGCTGCCCTTGACCCACCCAGAGCT TTACGAGGACATAGGTATTCGGCCCCCCAAGGGCGTCATTCTGTATGGCG AGCCAGGCACGGGGAAGACCTTACTAGCCAAGGCCGTAGCCAACCAGACA TCGGCAACATTCTTGCGCGTGGTGGGCTCGGAGCTAATTCAGAAGTATCT AGGTGATGGTCCCAAGTTGGTGCGGGAGCTCTTTCGGGTGGCGGACGACT TGTCACCGTCAATTGTGTTTATCGATGAGATTGACGCGGTGGGTTCCAAG CGGTATGATTCCAACTCGGGGGGCACGCGGGAGATCCAGCGGACGATGTT GGAGTTGTTGAACCAGCTGGATGGTTTTGATGAGCGGGGAGACGTTAAGG TGATCATGGCTACTAATAAAATTGAGTCCCTCGATCCTGCCCTTATTCGT CCCGGGCGAATTGATCGAAAGATTGAATTTCCCCTTCCAGATATCAAGAC AAAGCGTCGAATTTTCGGGATCCACACGGGGCGGATGACCATGAGCGATG ACGTGGACTTGGAAGTGTTCGTCATGGCGAAGGACGAGCTGAGCGGCGCG GACATCAAGGCGGTGTGCACCGAGGCGGGGCTGTTGGCGCTGCGGGAGAG GAGGATGAAGGTGACTCAGGAGGACTTTGTCAAGGCCAAGGAGAAGGCGT TGTACCGGAAGAAGGGCAACATCCCCGTCTCTATGTACTTGTAA
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Coding sequence (CDS) from alignment at chr9:331722..333065+

>NO09G00980.1 ID=NO09G00980.1|Name=NO09G00980.1|organism=Nannochloropsis oceanica|type=CDS|length=1344bp|location=Sequence derived from alignment at chr9:331722..333065+ (Nannochloropsis oceanica)
ATGGGACAAGGAGCTCCGGGGGGCATGCCTCCGCCGGGCGGGCAAGGCCC
TGGTCAGGGCGAGCAGAAGAAGGAGGACAAGACCAAGAAAAAGAAATTTG
AACCCCGCCCGGCGGCTAGGAGCGGGCGTCGCCGTCGTCGCAAGGGCCCT
TCCGCAGCCGTTCGCATCCCGCAAGTTTTTCCCACGTCCAAGTGCAAGCT
ACGACTGCTCAAGCTTGACCGTATCAAGGATTTCTTATTGCTGGAGGAGG
AGTTTATCCGCAACCAGGAAGTGTTTCGTCCCCATGAGGAGAAGGACCAG
GAGGAACGGGCCAAGGTAGAGGACCTGCGGGGCAGTCCCTTGGCGGTTGG
GAACCTGGAGGAGATGATCGACGACAACCACGCAATTGTCTCATCCTCGG
TAGGCCCCGAGTACTACGTGGGCGTGCTGTCTTTTGTGAACCAGGACTTG
CTGGAACCCGGGTGCACGGTGCTGCTGCACAACAAGGTGATGGCGGTGGT
GGGCATCTTGTCAGACGACACAGACCCTATGGTTTCTGTCATGAAGGTGG
AGAAGGCCCCCCTGGAATCCTATGCCGACATTGGCGGGCTGGAGTCGCAG
ATCCAGGAGATCAAGGAGGCGGTAGAGCTGCCCTTGACCCACCCAGAGCT
TTACGAGGACATAGGTATTCGGCCCCCCAAGGGCGTCATTCTGTATGGCG
AGCCAGGCACGGGGAAGACCTTACTAGCCAAGGCCGTAGCCAACCAGACA
TCGGCAACATTCTTGCGCGTGGTGGGCTCGGAGCTAATTCAGAAGTATCT
AGGTGATGGTCCCAAGTTGGTGCGGGAGCTCTTTCGGGTGGCGGACGACT
TGTCACCGTCAATTGTGTTTATCGATGAGATTGACGCGGTGGGTTCCAAG
CGGTATGATTCCAACTCGGGGGGCACGCGGGAGATCCAGCGGACGATGTT
GGAGTTGTTGAACCAGCTGGATGGTTTTGATGAGCGGGGAGACGTTAAGG
TGATCATGGCTACTAATAAAATTGAGTCCCTCGATCCTGCCCTTATTCGT
CCCGGGCGAATTGATCGAAAGATTGAATTTCCCCTTCCAGATATCAAGAC
AAAGCGTCGAATTTTCGGGATCCACACGGGGCGGATGACCATGAGCGATG
ACGTGGACTTGGAAGTGTTCGTCATGGCGAAGGACGAGCTGAGCGGCGCG
GACATCAAGGCGGTGTGCACCGAGGCGGGGCTGTTGGCGCTGCGGGAGAG
GAGGATGAAGGTGACTCAGGAGGACTTTGTCAAGGCCAAGGAGAAGGCGT
TGTACCGGAAGAAGGGCAACATCCCCGTCTCTATGTACTTGTAA
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Synonyms
Publications