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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:328801..330173 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G00960.1 vs.
Match: EWM27700.1 (dioxygenase-like protein [Nannochloropsis gaditana]) HSP 1 Score: 509.6 bits (1311), Expect = 8.100e-141 Identity = 251/353 (71.10%), Postives = 290/353 (82.15%), Query Frame = 0
Query: 18 IETIDLDAYFCTATPSSSSRRQEECVKAARSLQSTGCLYVRDSRVLHADNEAFLDLLERYFASSDGIRDARPELHYQVGVTPAMSEWPRNNCSRAAALPPAHRPVTLCPPEADPKWRYFWRVGPLPPTPSRFPQLNTAPVIPPDFPEWSQIMDMWGRKMLAAVSGVAAALAEGFGLPADAFTKRMEYGPHLLAPTGSNFGGRFGKVGTVLAGYHYDLNFLTIHGKSRFPGLFVWLRDGRKVAVKVPEGCLLVQAGKQCEYLTGGRILAGFHEVVVAPETREVIERRRKEGASLWRVSSTLFSHIASDEVLRPLLKKEEGEESEGEREDGEKSEYP--LAGEQVLSELRAIKLG 369
I+T+D+DAY T S S R+ EC KAA SL++TGCLYVRDSRV AD+ AFLD+LE YFA+SDG RDARP+L+YQVGVTPAM E PRN+C+RA++LPP HRP+TLCPP ADPKWR+FWRVGP PPTPS+F LN PV+PPD+P WS++MDMWG KML AV GVA A+AEGFGLP D+FT+RMEYGPHLLAPTGS+F GR G +GTVLAGYHYDLNFLTIHG++RFPGL VWLRDGRK+ V+VP GCLLVQAG+Q E+LTGGR+LAGFHEV V ET E I RR+ EG SLWRVSSTLFSHIASD+VLRPLL K G E E+G YP +AGE V+ ELRAIKLG
Sbjct: 21 IQTLDMDAYRDQTT--SLSCREAECRKAALSLETTGCLYVRDSRVREADSNAFLDMLESYFAASDGKRDARPDLYYQVGVTPAMIETPRNHCTRASSLPPLHRPLTLCPPHADPKWRFFWRVGPHPPTPSKFQPLNAPPVVPPDYPYWSKVMDMWGGKMLQAVWGVAEAVAEGFGLPPDSFTRRMEYGPHLLAPTGSDF-GRHGALGTVLAGYHYDLNFLTIHGRARFPGLSVWLRDGRKIPVRVPAGCLLVQAGRQMEHLTGGRVLAGFHEVAVGSETVEAIARRKAEGGSLWRVSSTLFSHIASDQVLRPLLGKGGGREGTATGEEG----YPPLMAGELVMEELRAIKLG 366
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G00960.1 ID=NO09G00960.1|Name=NO09G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1307bp TTCACAGAGAGACGAAATACTTGGCTACGCACAAACTCTGCCAGCACTGT CTTGATTACAACAGAAAGATGATGCCGTCACAAGCTGCCACTGAGCAAAC CGACAGACAAGCCCTTCTGATTGAGACCATCGACCTCGACGCCTACTTTT GCACCGCGACTCCCTCCTCTTCCTCTCGCCGTCAGGAGGAGTGTGTAAAG GCGGCCCGAAGCCTTCAATCCACCGGTTGCCTGTACGTCCGCGACTCCCG TGTGCTTCATGCCGACAACGAGGCTTTTCTCGACTTGCTCGAGAGGTACT TTGCCTCATCCGACGGCATTCGTGACGCCCGCCCCGAGCTCCATTACCAA GTGGGAGTCACGCCTGCTATGAGCGAATGGCCCCGCAACAACTGCTCGCG TGCCGCCGCCCTCCCTCCCGCCCACCGTCCTGTCACCCTCTGCCCCCCCG AGGCGGACCCCAAATGGCGATACTTCTGGCGGGTCGGGCCTCTCCCTCCA ACCCCCTCCCGATTCCCGCAGCTGAATACCGCTCCTGTCATCCCCCCCGA CTTTCCCGAGTGGAGCCAGATCATGGACATGTGGGGCCGGAAAATGCTAG CGGCCGTCAGCGGCGTGGCAGCAGCACTAGCAGAGGGCTTTGGCCTACCT GCGGATGCCTTCACCAAGCGGATGGAGTACGGCCCGCATTTGCTCGCGCC CACAGGATCCAATTTCGGGGGCAGATTCGGGAAAGTGGGCACGGTGCTTG CAGGCTATCACTACGACCTCAACTTTTTGACGATCCATGGCAAGAGCCGC TTCCCAGGGCTATTTGTTTGGCTAAGGGATGGGCGGAAGGTGGCCGTGAA GGTGCCGGAGGGGTGCTTGTTGGTGCAGGCGGGGAAGCAGTGCGAGTACT TGACGGGTGGAAGAATCTTGGCGGGTTTCCACGAAGTGGTGGTGGCACCA GAGACCAGGGAGGTGATAGAGAGGAGGAGGAAGGAGGGGGCGTCGTTGTG GCGGGTGTCATCGACGTTGTTCAGTCATATTGCCTCGGACGAGGTATTGA GGCCCTTGTTGAAGAAGGAGGAAGGGGAGGAGAGCGAGGGCGAGAGGGAG GACGGAGAGAAGAGTGAATACCCCCTGGCTGGGGAGCAAGTTCTATCGGA ATTGCGCGCCATCAAGCTGGGAAGATAGCGAGCAGCTGACATGGACATTT GTAGTATATCTTTGGTATCGAAAGTAATCGTACCAAGCAAGTGGCAGAAA GCCATCTTCATCCAGCGACCAAAGGATGAAAAAAAATCGCAAAAAACTGT CTGCACT back to topprotein sequence of NO09G00960.1 >NO09G00960.1-protein ID=NO09G00960.1-protein|Name=NO09G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp MMPSQAATEQTDRQALLIETIDLDAYFCTATPSSSSRRQEECVKAARSLQ STGCLYVRDSRVLHADNEAFLDLLERYFASSDGIRDARPELHYQVGVTPA MSEWPRNNCSRAAALPPAHRPVTLCPPEADPKWRYFWRVGPLPPTPSRFP QLNTAPVIPPDFPEWSQIMDMWGRKMLAAVSGVAAALAEGFGLPADAFTK RMEYGPHLLAPTGSNFGGRFGKVGTVLAGYHYDLNFLTIHGKSRFPGLFV WLRDGRKVAVKVPEGCLLVQAGKQCEYLTGGRILAGFHEVVVAPETREVI ERRRKEGASLWRVSSTLFSHIASDEVLRPLLKKEEGEESEGEREDGEKSE YPLAGEQVLSELRAIKLGR* back to topmRNA from alignment at chr9:328801..330173+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G00960.1 ID=NO09G00960.1|Name=NO09G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1373bp|location=Sequence derived from alignment at chr9:328801..330173+ (Nannochloropsis oceanica) TTCACAGAGAGACGAAATACTTGGCTACGCACAAACTCTGCCAGCACTGT
CTTGATTACAACAGAAAGATGATGCCGTCACAAGCTGCCACTGAGGTACG
AAAGGAGCGGCTAATTCCCTCTAGCAGTACTTCCCACCCCCACTCCTCCT
AAACCCTCCAGCAAACCGACAGACAAGCCCTTCTGATTGAGACCATCGAC
CTCGACGCCTACTTTTGCACCGCGACTCCCTCCTCTTCCTCTCGCCGTCA
GGAGGAGTGTGTAAAGGCGGCCCGAAGCCTTCAATCCACCGGTTGCCTGT
ACGTCCGCGACTCCCGTGTGCTTCATGCCGACAACGAGGCTTTTCTCGAC
TTGCTCGAGAGGTACTTTGCCTCATCCGACGGCATTCGTGACGCCCGCCC
CGAGCTCCATTACCAAGTGGGAGTCACGCCTGCTATGAGCGAATGGCCCC
GCAACAACTGCTCGCGTGCCGCCGCCCTCCCTCCCGCCCACCGTCCTGTC
ACCCTCTGCCCCCCCGAGGCGGACCCCAAATGGCGATACTTCTGGCGGGT
CGGGCCTCTCCCTCCAACCCCCTCCCGATTCCCGCAGCTGAATACCGCTC
CTGTCATCCCCCCCGACTTTCCCGAGTGGAGCCAGATCATGGACATGTGG
GGCCGGAAAATGCTAGCGGCCGTCAGCGGCGTGGCAGCAGCACTAGCAGA
GGGCTTTGGCCTACCTGCGGATGCCTTCACCAAGCGGATGGAGTACGGCC
CGCATTTGCTCGCGCCCACAGGATCCAATTTCGGGGGCAGATTCGGGAAA
GTGGGCACGGTGCTTGCAGGCTATCACTACGACCTCAACTTTTTGACGAT
CCATGGCAAGAGCCGCTTCCCAGGGCTATTTGTTTGGCTAAGGGATGGGC
GGAAGGTGGCCGTGAAGGTGCCGGAGGGGTGCTTGTTGGTGCAGGCGGGG
AAGCAGTGCGAGTACTTGACGGGTGGAAGAATCTTGGCGGGTTTCCACGA
AGTGGTGGTGGCACCAGAGACCAGGGAGGTGATAGAGAGGAGGAGGAAGG
AGGGGGCGTCGTTGTGGCGGGTGTCATCGACGTTGTTCAGTCATATTGCC
TCGGACGAGGTATTGAGGCCCTTGTTGAAGAAGGAGGAAGGGGAGGAGAG
CGAGGGCGAGAGGGAGGACGGAGAGAAGAGTGAATACCCCCTGGCTGGGG
AGCAAGTTCTATCGGAATTGCGCGCCATCAAGCTGGGAAGATAGCGAGCA
GCTGACATGGACATTTGTAGTATATCTTTGGTATCGAAAGTAATCGTACC
AAGCAAGTGGCAGAAAGCCATCTTCATCCAGCGACCAAAGGATGAAAAAA
AATCGCAAAAAACTGTCTGCACT back to topCoding sequence (CDS) from alignment at chr9:328801..330173+ >NO09G00960.1 ID=NO09G00960.1|Name=NO09G00960.1|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at chr9:328801..330173+ (Nannochloropsis oceanica) ATGATGCCGTCACAAGCTGCCACTGAGCAAACCGACAGACAAGCCCTTCT GATTGAGACCATCGACCTCGACGCCTACTTTTGCACCGCGACTCCCTCCT CTTCCTCTCGCCGTCAGGAGGAGTGTGTAAAGGCGGCCCGAAGCCTTCAA TCCACCGGTTGCCTGTACGTCCGCGACTCCCGTGTGCTTCATGCCGACAA CGAGGCTTTTCTCGACTTGCTCGAGAGGTACTTTGCCTCATCCGACGGCA TTCGTGACGCCCGCCCCGAGCTCCATTACCAAGTGGGAGTCACGCCTGCT ATGAGCGAATGGCCCCGCAACAACTGCTCGCGTGCCGCCGCCCTCCCTCC CGCCCACCGTCCTGTCACCCTCTGCCCCCCCGAGGCGGACCCCAAATGGC GATACTTCTGGCGGGTCGGGCCTCTCCCTCCAACCCCCTCCCGATTCCCG CAGCTGAATACCGCTCCTGTCATCCCCCCCGACTTTCCCGAGTGGAGCCA GATCATGGACATGTGGGGCCGGAAAATGCTAGCGGCCGTCAGCGGCGTGG CAGCAGCACTAGCAGAGGGCTTTGGCCTACCTGCGGATGCCTTCACCAAG CGGATGGAGTACGGCCCGCATTTGCTCGCGCCCACAGGATCCAATTTCGG GGGCAGATTCGGGAAAGTGGGCACGGTGCTTGCAGGCTATCACTACGACC TCAACTTTTTGACGATCCATGGCAAGAGCCGCTTCCCAGGGCTATTTGTT TGGCTAAGGGATGGGCGGAAGGTGGCCGTGAAGGTGCCGGAGGGGTGCTT GTTGGTGCAGGCGGGGAAGCAGTGCGAGTACTTGACGGGTGGAAGAATCT TGGCGGGTTTCCACGAAGTGGTGGTGGCACCAGAGACCAGGGAGGTGATA GAGAGGAGGAGGAAGGAGGGGGCGTCGTTGTGGCGGGTGTCATCGACGTT GTTCAGTCATATTGCCTCGGACGAGGTATTGAGGCCCTTGTTGAAGAAGG AGGAAGGGGAGGAGAGCGAGGGCGAGAGGGAGGACGGAGAGAAGAGTGAA TACCCCCTGGCTGGGGAGCAAGTTCTATCGGAATTGCGCGCCATCAAGCT GGGAAGATAG back to top
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