NO09G00960.1, NO09G00960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00960.1
Unique NameNO09G00960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1307
Alignment locationchr9:328801..330173 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:328801..330173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G00960.1 vs.
Match: EWM27700.1 (dioxygenase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 509.6 bits (1311), Expect = 8.100e-141
Identity = 251/353 (71.10%), Postives = 290/353 (82.15%), Query Frame = 0
Query:   18 IETIDLDAYFCTATPSSSSRRQEECVKAARSLQSTGCLYVRDSRVLHADNEAFLDLLERYFASSDGIRDARPELHYQVGVTPAMSEWPRNNCSRAAALPPAHRPVTLCPPEADPKWRYFWRVGPLPPTPSRFPQLNTAPVIPPDFPEWSQIMDMWGRKMLAAVSGVAAALAEGFGLPADAFTKRMEYGPHLLAPTGSNFGGRFGKVGTVLAGYHYDLNFLTIHGKSRFPGLFVWLRDGRKVAVKVPEGCLLVQAGKQCEYLTGGRILAGFHEVVVAPETREVIERRRKEGASLWRVSSTLFSHIASDEVLRPLLKKEEGEESEGEREDGEKSEYP--LAGEQVLSELRAIKLG 369
            I+T+D+DAY    T  S S R+ EC KAA SL++TGCLYVRDSRV  AD+ AFLD+LE YFA+SDG RDARP+L+YQVGVTPAM E PRN+C+RA++LPP HRP+TLCPP ADPKWR+FWRVGP PPTPS+F  LN  PV+PPD+P WS++MDMWG KML AV GVA A+AEGFGLP D+FT+RMEYGPHLLAPTGS+F GR G +GTVLAGYHYDLNFLTIHG++RFPGL VWLRDGRK+ V+VP GCLLVQAG+Q E+LTGGR+LAGFHEV V  ET E I RR+ EG SLWRVSSTLFSHIASD+VLRPLL K  G E     E+G    YP  +AGE V+ ELRAIKLG
Sbjct:   21 IQTLDMDAYRDQTT--SLSCREAECRKAALSLETTGCLYVRDSRVREADSNAFLDMLESYFAASDGKRDARPDLYYQVGVTPAMIETPRNHCTRASSLPPLHRPLTLCPPHADPKWRFFWRVGPHPPTPSKFQPLNAPPVVPPDYPYWSKVMDMWGGKMLQAVWGVAEAVAEGFGLPPDSFTRRMEYGPHLLAPTGSDF-GRHGALGTVLAGYHYDLNFLTIHGRARFPGLSVWLRDGRKIPVRVPAGCLLVQAGRQMEHLTGGRVLAGFHEVAVGSETVEAIARRKAEGGSLWRVSSTLFSHIASDQVLRPLLGKGGGREGTATGEEG----YPPLMAGELVMEELRAIKLG 366          
The following BLAST results are available for this feature:
BLAST of NO09G00960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27700.18.100e-14171.10dioxygenase-like protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00960NO09G00960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00960.1NO09G00960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00960.1.cds1NO09G00960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00960.1.cds2NO09G00960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00960.1 ID=NO09G00960.1|Name=NO09G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1307bp
TTCACAGAGAGACGAAATACTTGGCTACGCACAAACTCTGCCAGCACTGT
CTTGATTACAACAGAAAGATGATGCCGTCACAAGCTGCCACTGAGCAAAC
CGACAGACAAGCCCTTCTGATTGAGACCATCGACCTCGACGCCTACTTTT
GCACCGCGACTCCCTCCTCTTCCTCTCGCCGTCAGGAGGAGTGTGTAAAG
GCGGCCCGAAGCCTTCAATCCACCGGTTGCCTGTACGTCCGCGACTCCCG
TGTGCTTCATGCCGACAACGAGGCTTTTCTCGACTTGCTCGAGAGGTACT
TTGCCTCATCCGACGGCATTCGTGACGCCCGCCCCGAGCTCCATTACCAA
GTGGGAGTCACGCCTGCTATGAGCGAATGGCCCCGCAACAACTGCTCGCG
TGCCGCCGCCCTCCCTCCCGCCCACCGTCCTGTCACCCTCTGCCCCCCCG
AGGCGGACCCCAAATGGCGATACTTCTGGCGGGTCGGGCCTCTCCCTCCA
ACCCCCTCCCGATTCCCGCAGCTGAATACCGCTCCTGTCATCCCCCCCGA
CTTTCCCGAGTGGAGCCAGATCATGGACATGTGGGGCCGGAAAATGCTAG
CGGCCGTCAGCGGCGTGGCAGCAGCACTAGCAGAGGGCTTTGGCCTACCT
GCGGATGCCTTCACCAAGCGGATGGAGTACGGCCCGCATTTGCTCGCGCC
CACAGGATCCAATTTCGGGGGCAGATTCGGGAAAGTGGGCACGGTGCTTG
CAGGCTATCACTACGACCTCAACTTTTTGACGATCCATGGCAAGAGCCGC
TTCCCAGGGCTATTTGTTTGGCTAAGGGATGGGCGGAAGGTGGCCGTGAA
GGTGCCGGAGGGGTGCTTGTTGGTGCAGGCGGGGAAGCAGTGCGAGTACT
TGACGGGTGGAAGAATCTTGGCGGGTTTCCACGAAGTGGTGGTGGCACCA
GAGACCAGGGAGGTGATAGAGAGGAGGAGGAAGGAGGGGGCGTCGTTGTG
GCGGGTGTCATCGACGTTGTTCAGTCATATTGCCTCGGACGAGGTATTGA
GGCCCTTGTTGAAGAAGGAGGAAGGGGAGGAGAGCGAGGGCGAGAGGGAG
GACGGAGAGAAGAGTGAATACCCCCTGGCTGGGGAGCAAGTTCTATCGGA
ATTGCGCGCCATCAAGCTGGGAAGATAGCGAGCAGCTGACATGGACATTT
GTAGTATATCTTTGGTATCGAAAGTAATCGTACCAAGCAAGTGGCAGAAA
GCCATCTTCATCCAGCGACCAAAGGATGAAAAAAAATCGCAAAAAACTGT
CTGCACT
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protein sequence of NO09G00960.1

>NO09G00960.1-protein ID=NO09G00960.1-protein|Name=NO09G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MMPSQAATEQTDRQALLIETIDLDAYFCTATPSSSSRRQEECVKAARSLQ
STGCLYVRDSRVLHADNEAFLDLLERYFASSDGIRDARPELHYQVGVTPA
MSEWPRNNCSRAAALPPAHRPVTLCPPEADPKWRYFWRVGPLPPTPSRFP
QLNTAPVIPPDFPEWSQIMDMWGRKMLAAVSGVAAALAEGFGLPADAFTK
RMEYGPHLLAPTGSNFGGRFGKVGTVLAGYHYDLNFLTIHGKSRFPGLFV
WLRDGRKVAVKVPEGCLLVQAGKQCEYLTGGRILAGFHEVVVAPETREVI
ERRRKEGASLWRVSSTLFSHIASDEVLRPLLKKEEGEESEGEREDGEKSE
YPLAGEQVLSELRAIKLGR*
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mRNA from alignment at chr9:328801..330173+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00960.1 ID=NO09G00960.1|Name=NO09G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1373bp|location=Sequence derived from alignment at chr9:328801..330173+ (Nannochloropsis oceanica)
TTCACAGAGAGACGAAATACTTGGCTACGCACAAACTCTGCCAGCACTGT CTTGATTACAACAGAAAGATGATGCCGTCACAAGCTGCCACTGAGGTACG AAAGGAGCGGCTAATTCCCTCTAGCAGTACTTCCCACCCCCACTCCTCCT AAACCCTCCAGCAAACCGACAGACAAGCCCTTCTGATTGAGACCATCGAC CTCGACGCCTACTTTTGCACCGCGACTCCCTCCTCTTCCTCTCGCCGTCA GGAGGAGTGTGTAAAGGCGGCCCGAAGCCTTCAATCCACCGGTTGCCTGT ACGTCCGCGACTCCCGTGTGCTTCATGCCGACAACGAGGCTTTTCTCGAC TTGCTCGAGAGGTACTTTGCCTCATCCGACGGCATTCGTGACGCCCGCCC CGAGCTCCATTACCAAGTGGGAGTCACGCCTGCTATGAGCGAATGGCCCC GCAACAACTGCTCGCGTGCCGCCGCCCTCCCTCCCGCCCACCGTCCTGTC ACCCTCTGCCCCCCCGAGGCGGACCCCAAATGGCGATACTTCTGGCGGGT CGGGCCTCTCCCTCCAACCCCCTCCCGATTCCCGCAGCTGAATACCGCTC CTGTCATCCCCCCCGACTTTCCCGAGTGGAGCCAGATCATGGACATGTGG GGCCGGAAAATGCTAGCGGCCGTCAGCGGCGTGGCAGCAGCACTAGCAGA GGGCTTTGGCCTACCTGCGGATGCCTTCACCAAGCGGATGGAGTACGGCC CGCATTTGCTCGCGCCCACAGGATCCAATTTCGGGGGCAGATTCGGGAAA GTGGGCACGGTGCTTGCAGGCTATCACTACGACCTCAACTTTTTGACGAT CCATGGCAAGAGCCGCTTCCCAGGGCTATTTGTTTGGCTAAGGGATGGGC GGAAGGTGGCCGTGAAGGTGCCGGAGGGGTGCTTGTTGGTGCAGGCGGGG AAGCAGTGCGAGTACTTGACGGGTGGAAGAATCTTGGCGGGTTTCCACGA AGTGGTGGTGGCACCAGAGACCAGGGAGGTGATAGAGAGGAGGAGGAAGG AGGGGGCGTCGTTGTGGCGGGTGTCATCGACGTTGTTCAGTCATATTGCC TCGGACGAGGTATTGAGGCCCTTGTTGAAGAAGGAGGAAGGGGAGGAGAG CGAGGGCGAGAGGGAGGACGGAGAGAAGAGTGAATACCCCCTGGCTGGGG AGCAAGTTCTATCGGAATTGCGCGCCATCAAGCTGGGAAGATAGCGAGCA GCTGACATGGACATTTGTAGTATATCTTTGGTATCGAAAGTAATCGTACC AAGCAAGTGGCAGAAAGCCATCTTCATCCAGCGACCAAAGGATGAAAAAA AATCGCAAAAAACTGTCTGCACT
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Coding sequence (CDS) from alignment at chr9:328801..330173+

>NO09G00960.1 ID=NO09G00960.1|Name=NO09G00960.1|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at chr9:328801..330173+ (Nannochloropsis oceanica)
ATGATGCCGTCACAAGCTGCCACTGAGCAAACCGACAGACAAGCCCTTCT
GATTGAGACCATCGACCTCGACGCCTACTTTTGCACCGCGACTCCCTCCT
CTTCCTCTCGCCGTCAGGAGGAGTGTGTAAAGGCGGCCCGAAGCCTTCAA
TCCACCGGTTGCCTGTACGTCCGCGACTCCCGTGTGCTTCATGCCGACAA
CGAGGCTTTTCTCGACTTGCTCGAGAGGTACTTTGCCTCATCCGACGGCA
TTCGTGACGCCCGCCCCGAGCTCCATTACCAAGTGGGAGTCACGCCTGCT
ATGAGCGAATGGCCCCGCAACAACTGCTCGCGTGCCGCCGCCCTCCCTCC
CGCCCACCGTCCTGTCACCCTCTGCCCCCCCGAGGCGGACCCCAAATGGC
GATACTTCTGGCGGGTCGGGCCTCTCCCTCCAACCCCCTCCCGATTCCCG
CAGCTGAATACCGCTCCTGTCATCCCCCCCGACTTTCCCGAGTGGAGCCA
GATCATGGACATGTGGGGCCGGAAAATGCTAGCGGCCGTCAGCGGCGTGG
CAGCAGCACTAGCAGAGGGCTTTGGCCTACCTGCGGATGCCTTCACCAAG
CGGATGGAGTACGGCCCGCATTTGCTCGCGCCCACAGGATCCAATTTCGG
GGGCAGATTCGGGAAAGTGGGCACGGTGCTTGCAGGCTATCACTACGACC
TCAACTTTTTGACGATCCATGGCAAGAGCCGCTTCCCAGGGCTATTTGTT
TGGCTAAGGGATGGGCGGAAGGTGGCCGTGAAGGTGCCGGAGGGGTGCTT
GTTGGTGCAGGCGGGGAAGCAGTGCGAGTACTTGACGGGTGGAAGAATCT
TGGCGGGTTTCCACGAAGTGGTGGTGGCACCAGAGACCAGGGAGGTGATA
GAGAGGAGGAGGAAGGAGGGGGCGTCGTTGTGGCGGGTGTCATCGACGTT
GTTCAGTCATATTGCCTCGGACGAGGTATTGAGGCCCTTGTTGAAGAAGG
AGGAAGGGGAGGAGAGCGAGGGCGAGAGGGAGGACGGAGAGAAGAGTGAA
TACCCCCTGGCTGGGGAGCAAGTTCTATCGGAATTGCGCGCCATCAAGCT
GGGAAGATAG
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Synonyms
Publications