NO09G00950.2, NO09G00950.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00950.2
Unique NameNO09G00950.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1659
Alignment locationchr9:326287..328141 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:326287..328141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00950.2 vs.
Match: EWM27692.1 (superoxide dismutase [Nannochloropsis gaditana])

HSP 1 Score: 436.8 bits (1122), Expect = 5.600e-119
Identity = 210/299 (70.23%), Postives = 246/299 (82.27%), Query Frame = 0 
Query:    8 TDPGLQPKSAKVVFNNGVSGDIRMTQSDYKSPLEIKLNLKDLTDSVGPWHIHRLPVVSDCSANSTSGHYNPFAVSATYKACKDAAACEAGDLSTKFGPLTGGDVQRAVTDPKLTLFGFNSIMGRSVVIHNQDGIRIACGTIKYEDEEVAMATAEFKTGPYVGKAIFSQPKDNNQADTQIFMDLKMAEGVAAPTAPVAFAVFDAPCGSEGAKLLNPGDLQACKQFENTSPFKPCALGDLSGRHGKLTLPMTGGQAMFITDYLSLSKEGSVMGMSLVVEASGATPAACADIVPARPTLRTL 307
            +DPGLQPK A VVFNNGV+GD+ ++Q+ +KSPLE+KLNL  L DSVGPWHIHRLPV   CSANSTSGHYNPF V+ATYK CKDA  CEAGDLSTKFG LTGGDVQR++TDP LTLFGFNSIMGRS+VIH +DG R ACGTI Y+D+ +  ATAEF  GPYVGKAIF+QP+D+N ADT IFMD+ +A+G AAP+ PV+FAV+DAPCGS GAKLLNPG L AC Q  N SPFKPCALGDLSGRHG L +P T  QA+FITD+L LS + SV+G SLV+E +G TPAACA+I+ +  + R L
Sbjct:   26 SDPGLQPKEAVVVFNNGVTGDVHLSQATFKSPLEMKLNLTTLRDSVGPWHIHRLPVQDGCSANSTSGHYNPFNVTATYKTCKDATECEAGDLSTKFGLLTGGDVQRSITDPHLTLFGFNSIMGRSIVIHEKDGTRFACGTIMYKDQALVTATAEFTEGPYVGKAIFTQPQDSNIADTTIFMDVVVADGSAAPSDPVSFAVYDAPCGSLGAKLLNPGGLPACSQL-NNSPFKPCALGDLSGRHGTLAVPATDAQALFITDFLPLSGDQSVIGKSLVIEKTGTTPAACANIIKSASSSRNL 323
The following BLAST results are available for this feature:
BLAST of NO09G00950.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27692.15.600e-11970.23superoxide dismutase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00950NO09G00950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00950.2NO09G00950.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00950.2.cds1NO09G00950.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00950.2.cds2NO09G00950.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00950.2 ID=NO09G00950.2|Name=NO09G00950.2|organism=Nannochloropsis oceanica|type=mRNA|length=1659bp
CCTTGTGTCTGACGCTACACGACACTTCACAGACTCCAGCGTGCACTCCC
TCTCCAAGACGATATGTGGCCTATTCTCTTCGTCTGCATCTTTTTCATGG
GATCTTCTCATGGTACGTAGCTACTCCACTACGGTATGGTATCGATCGAT
CTTCGAGTGTATCGAAGAGGTCCACCTTCCTTTTTGCTGTCCAACATTCA
CCTTTTTGACTCTTGTCCTAGCTACCGGGCACAACACAGAGAGACACTTG
AAATGCATACCTTTATTGGGTTGTCGAATGGGGGGGCCCGCTTCTTGGGC
GAACGCCCCAGCTCACGCTTTAGAATCCCCCTAGGCATTTCCCAGTAGCC
CCTCAAAGCATTCACTAAGCACTGCTCCTTACACGCCACCACAAACTTCT
CACGTTAGCCAACTATATTCGACTCATATAATGCCCATGCAAGAATTCTA
GTGTCTCGTTATAATGGACATGTTGCCCTTGTGACTTCCCTTCTTCCGAG
CCCCCTTTCAAGATCGATCCTACGTTCCTACCGTACACATATTTAAATTC
ACATTTCCTACACTTTGATCCCCAGCCACCGATCGCATGGTGATGCTCAA
TATGGTCACGGATCCGGGCCTGCAGCCCAAGAGTGCCAAAGTTGTGTTCA
ACAATGGCGTGTCTGGTGACATACGCATGACCCAATCCGACTACAAGAGC
CCTTTGGAGATAAAGCTGAATCTTAAGGACCTGACGGACTCGGTGGGGCC
GTGGCACATCCACCGCCTGCCTGTCGTGAGCGATTGCTCGGCCAATAGCA
CGTCTGGGCACTACAACCCATTCGCCGTCAGTGCCACCTACAAGGCCTGC
AAGGACGCAGCTGCGTGCGAGGCGGGCGATTTGTCCACCAAGTTCGGTCC
CTTGACGGGAGGAGACGTGCAGAGAGCAGTCACTGACCCAAAGCTAACGC
TTTTTGGGTTCAACAGCATCATGGGACGCTCGGTGGTGATTCACAACCAA
GACGGGATCCGCATTGCTTGCGGCACTATCAAATATGAAGACGAGGAAGT
GGCCATGGCTACGGCCGAATTCAAGACGGGTCCTTACGTGGGCAAGGCCA
TTTTCAGCCAGCCCAAGGACAACAACCAGGCCGACACGCAGATTTTTATG
GACCTGAAAATGGCGGAGGGTGTAGCAGCTCCCACCGCTCCTGTGGCCTT
CGCTGTCTTCGACGCACCATGCGGCAGTGAAGGGGCAAAGCTCTTAAATC
CAGGTGATTTGCAGGCCTGCAAGCAATTTGAAAACACCTCTCCCTTCAAA
CCATGCGCGTTGGGTGACCTCTCCGGCCGACATGGAAAGTTGACCCTGCC
CATGACAGGCGGGCAGGCGATGTTCATCACGGACTATCTGTCTCTTTCCA
AGGAGGGAAGCGTGATGGGCATGTCGTTGGTGGTGGAGGCCAGCGGGGCT
ACTCCTGCTGCCTGCGCTGATATTGTGCCCGCACGTCCCACTCTCAGAAC
GCTGCTACGGGTTTCATCTTGAGAAGATTTGTTATCTAGCGATGTATATA
CACATGAACTCTTGAAATGTTTGAGGTGGGAGGGGGGGGAGTACGAAACG
GTTTAATTATAATCGAGGAGAATCAAAGATTTCCCGAAACATTAATGAAG
GCATCGTCG
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protein sequence of NO09G00950.2

>NO09G00950.2-protein ID=NO09G00950.2-protein|Name=NO09G00950.2|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MVMLNMVTDPGLQPKSAKVVFNNGVSGDIRMTQSDYKSPLEIKLNLKDLT
DSVGPWHIHRLPVVSDCSANSTSGHYNPFAVSATYKACKDAAACEAGDLS
TKFGPLTGGDVQRAVTDPKLTLFGFNSIMGRSVVIHNQDGIRIACGTIKY
EDEEVAMATAEFKTGPYVGKAIFSQPKDNNQADTQIFMDLKMAEGVAAPT
APVAFAVFDAPCGSEGAKLLNPGDLQACKQFENTSPFKPCALGDLSGRHG
KLTLPMTGGQAMFITDYLSLSKEGSVMGMSLVVEASGATPAACADIVPAR
PTLRTLLRVSS*
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mRNA from alignment at chr9:326287..328141-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00950.2 ID=NO09G00950.2|Name=NO09G00950.2|organism=Nannochloropsis oceanica|type=mRNA|length=1855bp|location=Sequence derived from alignment at chr9:326287..328141- (Nannochloropsis oceanica)
CCTTGTGTCTGACGCTACACGACACTTCACAGACTCCAGCGTGCACTCCC
TCTCCAAGACGATATGTGGCCTATTCTCTTCGTCTGCATCTTTTTCATGG
GATCTTCTCATGGTACGTAGCTACTCCACTACGGTATGGTATCGATCGAT
CTTCGAGTGTATCGAAGAGGTCCACCTTCCTTTTTGCTGTCCAACATTCA
CCTTTTTGACTCTTGTCCTAGCTACCGGGCACAACACAGAGAGACACTTG
AAATGCATACCTTTATTGGGTTGTCGAATGGGGGGGCCCGCTTCTTGGGC
GAACGCCCCAGCTCACGCTTTAGAATCCCCCTAGGCATTTCCCAGTAGCC
CCTCAAAGCATTCACTAAGCACTGCTCCTTACACGCCACCACAAACTTCT
CACGTTAGCCAACTATATTCGACTCATATAATGCCCATGCAAGAATTCTA
GTGTCTCGTTATAATGGACATGTTGCCCTTGTGACTTCCCTTCTTCCGAG
CCCCCTTTCAAGATCGATCCTACGTTCCTACCGTACACATATTTAAATTC
ACATTTCCTACACTTTGATCCCCAGCCACCGATCGCATGGTGATGCTCAA
TATGGTCACGGATCCGGGCCTGCAGCCCAAGAGTGCCAAAGTTGTGTTCA
ACAATGGCGTGTCTGGTGACATACGCATGACCCAATCCGACTACAAGAGC
CCTTTGGAGATAAAGCTGAATCTTAAGGACCTGACGGACTCGGTGGGGCC
GTGGCACATCCACCGCCTGCCTGTCGTGAGCGATTGCTCGGCCAATAGCA
CGTCTGGGCACTACAACCCATTCGCCGTCAGTGCCACCTACAAGGCCTGC
AAGGACGCAGCTGCGTGCGAGGCGGGCGATTTGTCCACCAAGTTCGGTCC
CTTGACGGGAGGAGACGTGCAGAGAGCAGTCACTGACCCAAAGCTAACGC
TTTTTGGGTTCAACAGGTGAGGAAGGAGAAGGCGATGGGGGAGTCTTTTC
TCCGGAAAAAGCGCGTTGCTTACTTTTTTGCTCGCGTCACGGTGGACTAT
CTTTTCCGTCAGCGCGCTGTCTGCCTTCTGTCTGTCTGCTCAATCTCTCC
CTTACGCTTCTTTGCCGTTTCAACGCATTCATCTTTTTCTTTTTCCTTCC
TCCTATTCAAAGCATCATGGGACGCTCGGTGGTGATTCACAACCAAGACG
GGATCCGCATTGCTTGCGGCACTATCAAATATGAAGACGAGGAAGTGGCC
ATGGCTACGGCCGAATTCAAGACGGGTCCTTACGTGGGCAAGGCCATTTT
CAGCCAGCCCAAGGACAACAACCAGGCCGACACGCAGATTTTTATGGACC
TGAAAATGGCGGAGGGTGTAGCAGCTCCCACCGCTCCTGTGGCCTTCGCT
GTCTTCGACGCACCATGCGGCAGTGAAGGGGCAAAGCTCTTAAATCCAGG
TGATTTGCAGGCCTGCAAGCAATTTGAAAACACCTCTCCCTTCAAACCAT
GCGCGTTGGGTGACCTCTCCGGCCGACATGGAAAGTTGACCCTGCCCATG
ACAGGCGGGCAGGCGATGTTCATCACGGACTATCTGTCTCTTTCCAAGGA
GGGAAGCGTGATGGGCATGTCGTTGGTGGTGGAGGCCAGCGGGGCTACTC
CTGCTGCCTGCGCTGATATTGTGCCCGCACGTCCCACTCTCAGAACGCTG
CTACGGGTTTCATCTTGAGAAGATTTGTTATCTAGCGATGTATATACACA
TGAACTCTTGAAATGTTTGAGGTGGGAGGGGGGGGAGTACGAAACGGTTT
AATTATAATCGAGGAGAATCAAAGATTTCCCGAAACATTAATGAAGGCAT
CGTCG
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Coding sequence (CDS) from alignment at chr9:326287..328141-

>NO09G00950.2 ID=NO09G00950.2|Name=NO09G00950.2|organism=Nannochloropsis oceanica|type=CDS|length=936bp|location=Sequence derived from alignment at chr9:326287..328141- (Nannochloropsis oceanica)
ATGGTGATGCTCAATATGGTCACGGATCCGGGCCTGCAGCCCAAGAGTGC
CAAAGTTGTGTTCAACAATGGCGTGTCTGGTGACATACGCATGACCCAAT
CCGACTACAAGAGCCCTTTGGAGATAAAGCTGAATCTTAAGGACCTGACG
GACTCGGTGGGGCCGTGGCACATCCACCGCCTGCCTGTCGTGAGCGATTG
CTCGGCCAATAGCACGTCTGGGCACTACAACCCATTCGCCGTCAGTGCCA
CCTACAAGGCCTGCAAGGACGCAGCTGCGTGCGAGGCGGGCGATTTGTCC
ACCAAGTTCGGTCCCTTGACGGGAGGAGACGTGCAGAGAGCAGTCACTGA
CCCAAAGCTAACGCTTTTTGGGTTCAACAGCATCATGGGACGCTCGGTGG
TGATTCACAACCAAGACGGGATCCGCATTGCTTGCGGCACTATCAAATAT
GAAGACGAGGAAGTGGCCATGGCTACGGCCGAATTCAAGACGGGTCCTTA
CGTGGGCAAGGCCATTTTCAGCCAGCCCAAGGACAACAACCAGGCCGACA
CGCAGATTTTTATGGACCTGAAAATGGCGGAGGGTGTAGCAGCTCCCACC
GCTCCTGTGGCCTTCGCTGTCTTCGACGCACCATGCGGCAGTGAAGGGGC
AAAGCTCTTAAATCCAGGTGATTTGCAGGCCTGCAAGCAATTTGAAAACA
CCTCTCCCTTCAAACCATGCGCGTTGGGTGACCTCTCCGGCCGACATGGA
AAGTTGACCCTGCCCATGACAGGCGGGCAGGCGATGTTCATCACGGACTA
TCTGTCTCTTTCCAAGGAGGGAAGCGTGATGGGCATGTCGTTGGTGGTGG
AGGCCAGCGGGGCTACTCCTGCTGCCTGCGCTGATATTGTGCCCGCACGT
CCCACTCTCAGAACGCTGCTACGGGTTTCATCTTGA
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Synonyms
Publications