NO09G00890.1, NO09G00890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00890.1
Unique NameNO09G00890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1776
Alignment locationchr9:312267..314238 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:312267..314238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00890.1 vs.
Match: EWM27687.1 (cdp-ethanolamine:dag ethanolamine phosphotransferase [Nannochloropsis gaditana])

HSP 1 Score: 614.8 bits (1584), Expect = 2.200e-172
Identity = 305/417 (73.14%), Postives = 354/417 (84.89%), Query Frame = 0 
Query:   30 RWVLSEVALEGVAAYKYVCGSSTPLDRILNHFWNWAVQLLPLWLAPNLVTLLGLAFMMASAVLVVLTNPSLTEPLSPDVALFCAFSLFAYQTLDAIDGKQARRTGTSSPLGQLFDHGCDALNAVLICTVLAGAWRLGDHPWLMMVILFNIFFAFFMGQWEEYHTGLMMLNNGYVGVTEGQVVQIAILLVTATVDASFWETPLLQIGGVGKGESSGAAVLVVTVKAVTMAWGCLLTFWVSACSIHRVLLSGQARILPTEEVGGKILGRKVAVQHLLPVLLSFILGGMWTVGHGQHVFLDHPVGVLMALGLTMAYLSTRMIVCHMAKQPFGTSELALPVLPQLLVVFNTYWKHLPQTLYAAIIRPTGGGLLPLSDVVLMWAYVGLMAAVYFYYTLGATEDICSHLGLYCLSIYPRRKKA 447
            RWVLSE+ALEGVA Y+YV GSST LDR+LNHFWNWAVQ LPLW+APNLVTLLGLAFM+ASA L+V+ + SLT P+SP VA+FCAFSLFAYQTLDAIDGKQARRTGTSSPLG+LFDHGCDALNAV I TVLA  WRLGDHPWLM+ +LFNIFFAFFMGQWEEYHTGLMM NNGY+GVTEGQ+VQI ILLVTAT  ASFW+ P+L++ GV +G       +VVTVKAV + WGCLLT WVS  S++RVLLSGQAR LP  EVG K+LGR+ AV+ LLPVLLSF+LG MWTVGHGQHVFL+HPVGVL+ALGLTMAYLSTRMIV HMAKQPFG++EL LPVLPQ+LV+ NT+ + L + + +A+    GG  LPL DVV+MW YV L+   Y Y+++GATEDIC++LGL+CLSI+PR K A
Sbjct:   23 RWVLSELALEGVATYRYVSGSSTFLDRVLNHFWNWAVQWLPLWVAPNLVTLLGLAFMLASAALIVVVDKSLTAPMSPQVAVFCAFSLFAYQTLDAIDGKQARRTGTSSPLGELFDHGCDALNAVFIFTVLAATWRLGDHPWLMLTVLFNIFFAFFMGQWEEYHTGLMMTNNGYIGVTEGQIVQIIILLVTATFGASFWDKPVLRL-GVHEG------AMVVTVKAVGLTWGCLLTLWVSLGSLYRVLLSGQARSLPVGEVGNKVLGRREAVRQLLPVLLSFLLGAMWTVGHGQHVFLEHPVGVLLALGLTMAYLSTRMIVSHMAKQPFGSAELILPVLPQVLVLANTHCRLLSEPI-SALGAQWGGQSLPLPDVVVMWLYVALITVAYAYFSVGATEDICAYLGLHCLSIHPRMKAA 431
The following BLAST results are available for this feature:
BLAST of NO09G00890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27687.12.200e-17273.14cdp-ethanolamine:dag ethanolamine phosphotransfera... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00890NO09G00890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00890.1NO09G00890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00890.1.cds1NO09G00890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00890.1.cds2NO09G00890.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00890.1 ID=NO09G00890.1|Name=NO09G00890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1776bp
CAGAGACACACGATCCGTCTCTGTGTGTATGTGGGTGCGTATGTGTGCTA
TTAGGCGCTGTAGACTGCTGGGAGGTGTACCAGGTTGCCAGGTTGTGATC
GCTCGATCACTCGCGGACGAAGCACTGCCCCATATTCGCACGCTCCCATC
CCACCCCCTGCTGTACCCACCACCACTTCCTCACACCCAGACACAATACA
GAGGTCGAAGGGTGCAGCGAGGATGGAGAAAACTGGCTGCCAAAGCGCTG
CGCCCATGAAAACGACGGCTACTTATCCCTTCAAAGACAGGCCTGCCACG
AGCCCTCGCAGGTGGGTGCTTTCCGAGGTGGCACTGGAAGGCGTGGCGGC
ATACAAGTACGTATGCGGCTCATCAACGCCCCTGGATAGGATACTTAACC
ACTTCTGGAACTGGGCCGTGCAATTGCTTCCTCTTTGGCTAGCGCCCAAT
CTCGTGACGCTCCTGGGTCTGGCATTTATGATGGCCTCGGCGGTCTTAGT
CGTTCTCACGAATCCGAGTCTGACCGAACCCTTATCGCCTGACGTCGCCT
TATTTTGTGCATTTAGTTTGTTTGCCTACCAGACGCTAGATGCCATTGAT
GGGAAGCAGGCCCGGCGAACGGGCACGTCCTCACCCCTTGGTCAGCTATT
TGACCACGGCTGCGACGCGCTAAACGCAGTACTAATCTGCACGGTGCTGG
CGGGTGCTTGGCGACTGGGCGATCACCCTTGGTTGATGATGGTCATTTTG
TTCAACATCTTCTTTGCTTTTTTTATGGGGCAGTGGGAGGAGTACCACAC
CGGCTTGATGATGTTGAATAATGGGTACGTTGGTGTCACGGAAGGCCAGG
TCGTGCAGATAGCCATCCTCCTCGTCACGGCCACAGTGGATGCCTCATTT
TGGGAGACGCCACTCCTTCAAATTGGTGGCGTAGGGAAGGGGGAAAGCAG
CGGCGCGGCGGTATTGGTCGTCACTGTCAAGGCAGTGACCATGGCCTGGG
GTTGCCTTCTGACCTTCTGGGTTTCGGCTTGCAGCATCCACCGCGTGCTT
CTCTCGGGACAAGCACGGATCCTACCAACCGAAGAGGTAGGTGGTAAGAT
TTTGGGAAGGAAGGTAGCCGTGCAGCATCTGTTGCCCGTTCTGCTCTCGT
TCATCCTTGGGGGCATGTGGACAGTCGGGCACGGGCAGCACGTCTTCCTC
GACCACCCCGTGGGTGTATTAATGGCGCTGGGCTTGACAATGGCCTACCT
TTCCACGCGCATGATTGTCTGCCACATGGCCAAACAGCCCTTTGGTACGT
CCGAGCTGGCCTTACCCGTCCTTCCTCAACTACTTGTCGTCTTTAACACT
TATTGGAAGCATCTGCCTCAAACCCTCTATGCCGCTATCATCCGACCCAC
GGGCGGCGGTCTATTGCCTCTTTCGGACGTGGTGCTCATGTGGGCTTACG
TGGGTCTAATGGCGGCTGTGTACTTTTACTACACCTTGGGTGCCACAGAG
GATATCTGTTCTCATTTGGGACTGTATTGCTTAAGTATTTACCCGCGACG
GAAGAAGGCGGAGTAAGTCAGTTGAAAAATAAATATGCGTGAGGAAGTGG
AAAAGAGTATAGATGACGGTGAAACTTTATGTAGATAATTGTATACGTAC
GTAAGTAGAAATGAGATAGCGATCGCCGCCACCACAAAAATTTCATCAGG
TGGGGAGGGCGAACATAATTGACCATTTGAAAAATAGTTTGAAGTCGATA
TGAGAAAAAAAATAGCAATAGCAACG
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protein sequence of NO09G00890.1

>NO09G00890.1-protein ID=NO09G00890.1-protein|Name=NO09G00890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MEKTGCQSAAPMKTTATYPFKDRPATSPRRWVLSEVALEGVAAYKYVCGS
STPLDRILNHFWNWAVQLLPLWLAPNLVTLLGLAFMMASAVLVVLTNPSL
TEPLSPDVALFCAFSLFAYQTLDAIDGKQARRTGTSSPLGQLFDHGCDAL
NAVLICTVLAGAWRLGDHPWLMMVILFNIFFAFFMGQWEEYHTGLMMLNN
GYVGVTEGQVVQIAILLVTATVDASFWETPLLQIGGVGKGESSGAAVLVV
TVKAVTMAWGCLLTFWVSACSIHRVLLSGQARILPTEEVGGKILGRKVAV
QHLLPVLLSFILGGMWTVGHGQHVFLDHPVGVLMALGLTMAYLSTRMIVC
HMAKQPFGTSELALPVLPQLLVVFNTYWKHLPQTLYAAIIRPTGGGLLPL
SDVVLMWAYVGLMAAVYFYYTLGATEDICSHLGLYCLSIYPRRKKAE*
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mRNA from alignment at chr9:312267..314238+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00890.1 ID=NO09G00890.1|Name=NO09G00890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1972bp|location=Sequence derived from alignment at chr9:312267..314238+ (Nannochloropsis oceanica)
CAGAGACACACGATCCGTCTCTGTGTGTATGTGGGTGCGTATGTGTGCTA
TTAGGCGCTGTAGACTGCTGGGAGGTGTACCAGGTTGCCAGGTTGTGATC
GCTCGATCACTCGCGGACGAAGCACTGCCCCATATTCGCACGCTCCCATC
CCACCCCCTGCTGTACCCACCACCACTTCCTCACACCCAGACACAATACA
GAGGTCGAAGGGTGCAGCGAGGATGGAGAAAACTGGCTGCCAAAGCGCTG
CGCCCATGAAAACGACGGCTACTTATCCCTTCAAAGACAGGCCTGCCACG
AGCCCTCGCAGGTAAGGCTTACGTTCAGGCGGATGCAGGCGGGTTTGTGG
ACGAGAAGTGATCAGCACAGTTGTCGACGAATAAGGGAGGGGAAGTCGCA
AGGGGTTGATTCAATAAGAGAAGTGAGCGGGCAGTAATTGGAGATCTGCA
ACATGCCATGTCCTTCTCCGACATGTCTCCTCACCTTTTACTACACACAC
GTCACAGGTGGGTGCTTTCCGAGGTGGCACTGGAAGGCGTGGCGGCATAC
AAGTACGTATGCGGCTCATCAACGCCCCTGGATAGGATACTTAACCACTT
CTGGAACTGGGCCGTGCAATTGCTTCCTCTTTGGCTAGCGCCCAATCTCG
TGACGCTCCTGGGTCTGGCATTTATGATGGCCTCGGCGGTCTTAGTCGTT
CTCACGAATCCGAGTCTGACCGAACCCTTATCGCCTGACGTCGCCTTATT
TTGTGCATTTAGTTTGTTTGCCTACCAGACGCTAGATGCCATTGATGGGA
AGCAGGCCCGGCGAACGGGCACGTCCTCACCCCTTGGTCAGCTATTTGAC
CACGGCTGCGACGCGCTAAACGCAGTACTAATCTGCACGGTGCTGGCGGG
TGCTTGGCGACTGGGCGATCACCCTTGGTTGATGATGGTCATTTTGTTCA
ACATCTTCTTTGCTTTTTTTATGGGGCAGTGGGAGGAGTACCACACCGGC
TTGATGATGTTGAATAATGGGTACGTTGGTGTCACGGAAGGCCAGGTCGT
GCAGATAGCCATCCTCCTCGTCACGGCCACAGTGGATGCCTCATTTTGGG
AGACGCCACTCCTTCAAATTGGTGGCGTAGGGAAGGGGGAAAGCAGCGGC
GCGGCGGTATTGGTCGTCACTGTCAAGGCAGTGACCATGGCCTGGGGTTG
CCTTCTGACCTTCTGGGTTTCGGCTTGCAGCATCCACCGCGTGCTTCTCT
CGGGACAAGCACGGATCCTACCAACCGAAGAGGTAGGTGGTAAGATTTTG
GGAAGGAAGGTAGCCGTGCAGCATCTGTTGCCCGTTCTGCTCTCGTTCAT
CCTTGGGGGCATGTGGACAGTCGGGCACGGGCAGCACGTCTTCCTCGACC
ACCCCGTGGGTGTATTAATGGCGCTGGGCTTGACAATGGCCTACCTTTCC
ACGCGCATGATTGTCTGCCACATGGCCAAACAGCCCTTTGGTACGTCCGA
GCTGGCCTTACCCGTCCTTCCTCAACTACTTGTCGTCTTTAACACTTATT
GGAAGCATCTGCCTCAAACCCTCTATGCCGCTATCATCCGACCCACGGGC
GGCGGTCTATTGCCTCTTTCGGACGTGGTGCTCATGTGGGCTTACGTGGG
TCTAATGGCGGCTGTGTACTTTTACTACACCTTGGGTGCCACAGAGGATA
TCTGTTCTCATTTGGGACTGTATTGCTTAAGTATTTACCCGCGACGGAAG
AAGGCGGAGTAAGTCAGTTGAAAAATAAATATGCGTGAGGAAGTGGAAAA
GAGTATAGATGACGGTGAAACTTTATGTAGATAATTGTATACGTACGTAA
GTAGAAATGAGATAGCGATCGCCGCCACCACAAAAATTTCATCAGGTGGG
GAGGGCGAACATAATTGACCATTTGAAAAATAGTTTGAAGTCGATATGAG
AAAAAAAATAGCAATAGCAACG
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Coding sequence (CDS) from alignment at chr9:312267..314238+

>NO09G00890.1 ID=NO09G00890.1|Name=NO09G00890.1|organism=Nannochloropsis oceanica|type=CDS|length=1344bp|location=Sequence derived from alignment at chr9:312267..314238+ (Nannochloropsis oceanica)
ATGGAGAAAACTGGCTGCCAAAGCGCTGCGCCCATGAAAACGACGGCTAC
TTATCCCTTCAAAGACAGGCCTGCCACGAGCCCTCGCAGGTGGGTGCTTT
CCGAGGTGGCACTGGAAGGCGTGGCGGCATACAAGTACGTATGCGGCTCA
TCAACGCCCCTGGATAGGATACTTAACCACTTCTGGAACTGGGCCGTGCA
ATTGCTTCCTCTTTGGCTAGCGCCCAATCTCGTGACGCTCCTGGGTCTGG
CATTTATGATGGCCTCGGCGGTCTTAGTCGTTCTCACGAATCCGAGTCTG
ACCGAACCCTTATCGCCTGACGTCGCCTTATTTTGTGCATTTAGTTTGTT
TGCCTACCAGACGCTAGATGCCATTGATGGGAAGCAGGCCCGGCGAACGG
GCACGTCCTCACCCCTTGGTCAGCTATTTGACCACGGCTGCGACGCGCTA
AACGCAGTACTAATCTGCACGGTGCTGGCGGGTGCTTGGCGACTGGGCGA
TCACCCTTGGTTGATGATGGTCATTTTGTTCAACATCTTCTTTGCTTTTT
TTATGGGGCAGTGGGAGGAGTACCACACCGGCTTGATGATGTTGAATAAT
GGGTACGTTGGTGTCACGGAAGGCCAGGTCGTGCAGATAGCCATCCTCCT
CGTCACGGCCACAGTGGATGCCTCATTTTGGGAGACGCCACTCCTTCAAA
TTGGTGGCGTAGGGAAGGGGGAAAGCAGCGGCGCGGCGGTATTGGTCGTC
ACTGTCAAGGCAGTGACCATGGCCTGGGGTTGCCTTCTGACCTTCTGGGT
TTCGGCTTGCAGCATCCACCGCGTGCTTCTCTCGGGACAAGCACGGATCC
TACCAACCGAAGAGGTAGGTGGTAAGATTTTGGGAAGGAAGGTAGCCGTG
CAGCATCTGTTGCCCGTTCTGCTCTCGTTCATCCTTGGGGGCATGTGGAC
AGTCGGGCACGGGCAGCACGTCTTCCTCGACCACCCCGTGGGTGTATTAA
TGGCGCTGGGCTTGACAATGGCCTACCTTTCCACGCGCATGATTGTCTGC
CACATGGCCAAACAGCCCTTTGGTACGTCCGAGCTGGCCTTACCCGTCCT
TCCTCAACTACTTGTCGTCTTTAACACTTATTGGAAGCATCTGCCTCAAA
CCCTCTATGCCGCTATCATCCGACCCACGGGCGGCGGTCTATTGCCTCTT
TCGGACGTGGTGCTCATGTGGGCTTACGTGGGTCTAATGGCGGCTGTGTA
CTTTTACTACACCTTGGGTGCCACAGAGGATATCTGTTCTCATTTGGGAC
TGTATTGCTTAAGTATTTACCCGCGACGGAAGAAGGCGGAGTAA
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Synonyms
Publications