NO09G00800.1, NO09G00800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00800.1
Unique NameNO09G00800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2014
Alignment locationchr9:281922..284212 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:281922..284212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00800.1 vs.
Match: EWM27713.1 (peroxisomal membrane 22 kda (mpv17 pmp22) family protein [Nannochloropsis gaditana])

HSP 1 Score: 495.7 bits (1275), Expect = 1.500e-136
Identity = 260/403 (64.52%), Postives = 300/403 (74.44%), Query Frame = 0 
Query:   42 KAVAPLAPTHHYGLPALYMHLGSEPPPPTLVEETSAILDIPAALISNNFPTPNSNSSLITAALRFLEGEPMDKQILKKWLNLVLLVAAGVYGTSLLVTVDMDNWRGWTLQEIMLRIPYDNWQEYEGGLSTHPILVKTIINVVIYIIGDWMSQVGWGRTKNLLDFDLARTARNGLIGAMFGPLVHYYYDFSDWLLPMDVPINRVYKLLMDQSIYFFVKCSAYIALVGLLRGDPPKEVVQDVKGRIWPVVFRGWRFWPVAHIVTYGFIPTRHRVLWVNMLDLLWSSILAQLASKEGGEELAAASVAVEISGAAPNALETSQTSASALPPSCSQMVPNASVTAYFAENRTEEDAAMQE---------AIAATARDSMPSLLPITADELSSAPGLDVVNPH-DGETG 435
            +AV    P H    P L++H GSE    T+ EET  I+DIP ALI+N+FPTPNSNSSLI+AAL F EGEP+DK I+ KW NLVLL+AA VY TS+L+TVDM++WRGWT+QEIMLRIPYDNWQEYEGGLSTHPI VKT+INVVIY+IGDWMSQVGWGRTKNLLDFDLARTARNGLIGAMFGPLVHYYYD+SD++LPM+VP+NRV KLLMDQS+YF  KCSAYIALVGLLRGD P  V QDVK RI PVVFRGWRFWP+AH+VTYG IP RHRVLWVNMLDLLWSSILA LASKEG E+ + AS  V  +GAA         S+    P+  +  P  +  A F  + TEE  A +E         A+ A A D     L +  D+L      D + PH DGE+G
Sbjct:   62 RAVTLTRPRHDS--PTLHVHQGSESSSSTVKEETIPIMDIPTALITNHFPTPNSNSSLISAALAFTEGEPVDKAIMAKWRNLVLLIAAAVYATSILITVDMESWRGWTIQEIMLRIPYDNWQEYEGGLSTHPIFVKTVINVVIYVIGDWMSQVGWGRTKNLLDFDLARTARNGLIGAMFGPLVHYYYDWSDYILPMEVPVNRVLKLLMDQSVYFVAKCSAYIALVGLLRGDTPAVVAQDVKERIQPVVFRGWRFWPLAHVVTYGVIPPRHRVLWVNMLDLLWSSILASLASKEGEEDASTASSPVPETGAA------LMNSSDWRGPTELEPAPPGASPAEFLVSTTEERRAEEEETVGRDLLAAVTAVAPDVNEHTLHVLPDQLVET--RDALRPHSDGESG 454
The following BLAST results are available for this feature:
BLAST of NO09G00800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27713.11.500e-13664.52peroxisomal membrane 22 kda (mpv17 pmp22) family p... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00800NO09G00800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00800.1NO09G00800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00800.1.cds1NO09G00800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00800.1.cds2NO09G00800.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00800.1.cds3NO09G00800.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00800.1 ID=NO09G00800.1|Name=NO09G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2014bp
AAAACACACAGATGGGGCTGTCATGCACCCACTGAAACGATGAAAGAGAC
CTGAGTCGAGTTTCGAGTGGCCCTCTTGTGGCAGGTGACTTGATTCTGGG
TTGCAGCGCTGCACCTCAGATCGAGAAGAACAGCACACCAGAAGCCAACA
GCACCTCCAGATAATGGTCCCGCGCCGAATCCAGGCCTTTATGGGGATGG
TGTTAGCGTGCAGCAGTATAACGTGCCCAATCATGGCCTTTGTGTCCTTT
CCTGCACGAGGTCCGGCCATCCTAAGCCGTGGCAGAAAAGCAGTAGCACC
CCTAGCCCCTACGCATCACTACGGCCTTCCCGCTTTGTACATGCACCTGG
GCAGCGAACCACCTCCGCCCACACTCGTGGAGGAGACCAGTGCCATTCTA
GACATCCCGGCGGCTTTGATTAGTAACAACTTTCCTACCCCCAACTCGAA
CTCGAGCCTTATCACGGCAGCTTTGCGATTTCTTGAGGGCGAACCCATGG
ACAAGCAGATCTTGAAAAAATGGCTCAATCTGGTGCTCTTGGTCGCAGCG
GGAGTCTATGGCACCTCGCTCCTCGTCACCGTGGACATGGATAACTGGCG
GGGTTGGACCTTGCAAGAAATCATGCTCCGTATTCCCTACGACAACTGGC
AAGAGTATGAAGGAGGCCTGAGCACACATCCCATCCTGGTGAAAACGATT
ATCAATGTCGTGATTTACATTATCGGTGACTGGATGTCACAAGTCGGTTG
GGGCCGCACAAAAAATTTGCTTGACTTTGACCTGGCGCGCACAGCTCGTA
ATGGCCTCATCGGTGCTATGTTTGGGCCGCTGGTTCACTATTATTATGAT
TTCTCGGATTGGCTCCTGCCGATGGACGTGCCTATTAATAGGGTCTACAA
GCTCCTCATGGATCAGTCTATTTATTTCTTTGTCAAGTGTAGCGCATACA
TCGCTTTGGTAGGTCTGTTGCGTGGCGATCCACCGAAGGAAGTGGTGCAG
GACGTGAAAGGGCGCATTTGGCCCGTCGTTTTCCGCGGATGGCGCTTCTG
GCCAGTGGCGCACATTGTAACGTACGGCTTCATTCCTACCCGGCATCGTG
TCCTGTGGGTGAACATGCTTGACTTGCTGTGGTCCTCTATCCTTGCCCAA
TTGGCCTCCAAGGAAGGGGGGGAAGAGTTGGCTGCGGCTTCGGTGGCAGT
TGAAATCTCTGGGGCTGCTCCCAATGCTCTCGAAACCAGCCAGACTTCTG
CTTCCGCCTTGCCTCCTTCCTGTTCTCAGATGGTTCCTAATGCATCGGTC
ACAGCATATTTCGCAGAGAACCGCACCGAGGAGGATGCAGCAATGCAGGA
AGCGATAGCAGCAACAGCAAGAGATTCAATGCCTTCACTGTTGCCCATCA
CGGCCGACGAGCTTTCCTCAGCTCCTGGGCTTGACGTTGTTAATCCTCAT
GACGGAGAGACAGGAGAAGAGAAAGGCGTCAACTTGCTGGTACAGTTGGG
AAGAAAGGAGGCGGGGGGGCGGTGAAATGAAAGGCAGATAAATATATATA
TCCTCGAGAGGATGGCAGATAAACGGGAGAAAAGGTAGATAACTGATTTT
AAATACAAGCACACAGGGGGGTTGCCGCAAGGTCGTCCCATTGTATTATG
TCTGTGCCACCTCATTTTCCAGTGTTATTACGAAGATCAATTTCGCTTGT
ACATTTCGTCTTTCGCAGGTCAATAAGTAGTCGAATTCTTAGGTCACAAT
GATTGAGGGAAATGAAATAGATGGAGTTGCAGTGGCCAGCAGCGAAGGAA
AAAGAAACAGGAGGTGGGGATAAGATGAAGGGAAGGGTGGACGCAGCGAG
GGAACGAGAGAGTGCGTGTGTGATTTAAATACGGCACAGGAGCAGGGGAG
ATTGGAAACCGGTCTTCGCTGTCGTTGCTGCATTGAAACGTTTACACATC
AGATGTCTGTGCTTTTCTCAGCCAAAAACGCCCTCTTTAGATAATTTTCA
ACGCAACATAAACG
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protein sequence of NO09G00800.1

>NO09G00800.1-protein ID=NO09G00800.1-protein|Name=NO09G00800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MVPRRIQAFMGMVLACSSITCPIMAFVSFPARGPAILSRGRKAVAPLAPT
HHYGLPALYMHLGSEPPPPTLVEETSAILDIPAALISNNFPTPNSNSSLI
TAALRFLEGEPMDKQILKKWLNLVLLVAAGVYGTSLLVTVDMDNWRGWTL
QEIMLRIPYDNWQEYEGGLSTHPILVKTIINVVIYIIGDWMSQVGWGRTK
NLLDFDLARTARNGLIGAMFGPLVHYYYDFSDWLLPMDVPINRVYKLLMD
QSIYFFVKCSAYIALVGLLRGDPPKEVVQDVKGRIWPVVFRGWRFWPVAH
IVTYGFIPTRHRVLWVNMLDLLWSSILAQLASKEGGEELAAASVAVEISG
AAPNALETSQTSASALPPSCSQMVPNASVTAYFAENRTEEDAAMQEAIAA
TARDSMPSLLPITADELSSAPGLDVVNPHDGETGEEKGVNLLVQLGRKEA
GGR*
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mRNA from alignment at chr9:281922..284212+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00800.1 ID=NO09G00800.1|Name=NO09G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2291bp|location=Sequence derived from alignment at chr9:281922..284212+ (Nannochloropsis oceanica)
AAAACACACAGATGGGGCTGTCATGCACCCACTGAAACGATGAAAGAGAC
CTGAGTCGAGTTTCGAGTGGCCCTCTTGTGGCAGGTGACTTGATTCTGGG
TTGCAGCGCTGCACCTCAGATCGAGAAGAACAGCACACCAGAAGCCAACA
GCACCTCCAGATAATGGTCCCGCGCCGAATCCAGGCCTTTATGGGGATGG
TGTTAGCGTGCAGCAGTATAACGTGCCCAATCATGGCCTTTGTGTCCTTT
CCTGCACGAGGTCCGGCCATCCTAAGCCGTGGCAGAAAAGCAGTAGCACC
CCTAGCCCCTACGCATCACTACGGCCTTCCCGCTTTGTACATGCACCTGG
GCAGCGAACCACCTCCGCCCACACTCGTGGAGGAGACCAGTGCCATTCTA
GACATCCCGGCGGCTTTGATTAGTAACAACTTTCCTACCCCCAACTCGGT
AAGTTAGTGGAAGAAATAACGCTACTCCATCCTGACCTCTGTAGTTAGTA
CATCCCTCCATGCTTACACACACACACACACACACACACACACACACACA
CACACACACACACAAACATACATGCATCACCAGAACTCGAGCCTTATCAC
GGCAGCTTTGCGATTTCTTGAGGGCGAACCCATGGACAAGCAGATCTTGA
AAAAATGGCTCAATCTGGTGCTCTTGGTCGCAGCGGGAGTCTATGGCACC
TCGCTCCTCGTCACCGTGGACATGGATAACTGGCGGGGTTGGACCTTGCA
AGAAATCATGCTCCGTATTCCCTGTAAGAGCTGTAATAAAATCCAGGCAG
TGGGGCCTCTAGAGACCCCGTTTCATCTTGTCATGTTGTCACATAAACAA
GTACCATTCCTGCCACTTGATAACATGCCCCTTCCTCCTCTCTCTCTCCC
ACCCCAACCACGCAGACGACAACTGGCAAGAGTATGAAGGAGGCCTGAGC
ACACATCCCATCCTGGTGAAAACGATTATCAATGTCGTGATTTACATTAT
CGGTGACTGGATGTCACAAGTCGGTTGGGGCCGCACAAAAAATTTGCTTG
ACTTTGACCTGGCGCGCACAGCTCGTAATGGCCTCATCGGTGCTATGTTT
GGGCCGCTGGTTCACTATTATTATGATTTCTCGGATTGGCTCCTGCCGAT
GGACGTGCCTATTAATAGGGTCTACAAGCTCCTCATGGATCAGTCTATTT
ATTTCTTTGTCAAGTGTAGCGCATACATCGCTTTGGTAGGTCTGTTGCGT
GGCGATCCACCGAAGGAAGTGGTGCAGGACGTGAAAGGGCGCATTTGGCC
CGTCGTTTTCCGCGGATGGCGCTTCTGGCCAGTGGCGCACATTGTAACGT
ACGGCTTCATTCCTACCCGGCATCGTGTCCTGTGGGTGAACATGCTTGAC
TTGCTGTGGTCCTCTATCCTTGCCCAATTGGCCTCCAAGGAAGGGGGGGA
AGAGTTGGCTGCGGCTTCGGTGGCAGTTGAAATCTCTGGGGCTGCTCCCA
ATGCTCTCGAAACCAGCCAGACTTCTGCTTCCGCCTTGCCTCCTTCCTGT
TCTCAGATGGTTCCTAATGCATCGGTCACAGCATATTTCGCAGAGAACCG
CACCGAGGAGGATGCAGCAATGCAGGAAGCGATAGCAGCAACAGCAAGAG
ATTCAATGCCTTCACTGTTGCCCATCACGGCCGACGAGCTTTCCTCAGCT
CCTGGGCTTGACGTTGTTAATCCTCATGACGGAGAGACAGGAGAAGAGAA
AGGCGTCAACTTGCTGGTACAGTTGGGAAGAAAGGAGGCGGGGGGGCGGT
GAAATGAAAGGCAGATAAATATATATATCCTCGAGAGGATGGCAGATAAA
CGGGAGAAAAGGTAGATAACTGATTTTAAATACAAGCACACAGGGGGGTT
GCCGCAAGGTCGTCCCATTGTATTATGTCTGTGCCACCTCATTTTCCAGT
GTTATTACGAAGATCAATTTCGCTTGTACATTTCGTCTTTCGCAGGTCAA
TAAGTAGTCGAATTCTTAGGTCACAATGATTGAGGGAAATGAAATAGATG
GAGTTGCAGTGGCCAGCAGCGAAGGAAAAAGAAACAGGAGGTGGGGATAA
GATGAAGGGAAGGGTGGACGCAGCGAGGGAACGAGAGAGTGCGTGTGTGA
TTTAAATACGGCACAGGAGCAGGGGAGATTGGAAACCGGTCTTCGCTGTC
GTTGCTGCATTGAAACGTTTACACATCAGATGTCTGTGCTTTTCTCAGCC
AAAAACGCCCTCTTTAGATAATTTTCAACGCAACATAAACG
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Coding sequence (CDS) from alignment at chr9:281922..284212+

>NO09G00800.1 ID=NO09G00800.1|Name=NO09G00800.1|organism=Nannochloropsis oceanica|type=CDS|length=1362bp|location=Sequence derived from alignment at chr9:281922..284212+ (Nannochloropsis oceanica)
ATGGTCCCGCGCCGAATCCAGGCCTTTATGGGGATGGTGTTAGCGTGCAG
CAGTATAACGTGCCCAATCATGGCCTTTGTGTCCTTTCCTGCACGAGGTC
CGGCCATCCTAAGCCGTGGCAGAAAAGCAGTAGCACCCCTAGCCCCTACG
CATCACTACGGCCTTCCCGCTTTGTACATGCACCTGGGCAGCGAACCACC
TCCGCCCACACTCGTGGAGGAGACCAGTGCCATTCTAGACATCCCGGCGG
CTTTGATTAGTAACAACTTTCCTACCCCCAACTCGAACTCGAGCCTTATC
ACGGCAGCTTTGCGATTTCTTGAGGGCGAACCCATGGACAAGCAGATCTT
GAAAAAATGGCTCAATCTGGTGCTCTTGGTCGCAGCGGGAGTCTATGGCA
CCTCGCTCCTCGTCACCGTGGACATGGATAACTGGCGGGGTTGGACCTTG
CAAGAAATCATGCTCCGTATTCCCTACGACAACTGGCAAGAGTATGAAGG
AGGCCTGAGCACACATCCCATCCTGGTGAAAACGATTATCAATGTCGTGA
TTTACATTATCGGTGACTGGATGTCACAAGTCGGTTGGGGCCGCACAAAA
AATTTGCTTGACTTTGACCTGGCGCGCACAGCTCGTAATGGCCTCATCGG
TGCTATGTTTGGGCCGCTGGTTCACTATTATTATGATTTCTCGGATTGGC
TCCTGCCGATGGACGTGCCTATTAATAGGGTCTACAAGCTCCTCATGGAT
CAGTCTATTTATTTCTTTGTCAAGTGTAGCGCATACATCGCTTTGGTAGG
TCTGTTGCGTGGCGATCCACCGAAGGAAGTGGTGCAGGACGTGAAAGGGC
GCATTTGGCCCGTCGTTTTCCGCGGATGGCGCTTCTGGCCAGTGGCGCAC
ATTGTAACGTACGGCTTCATTCCTACCCGGCATCGTGTCCTGTGGGTGAA
CATGCTTGACTTGCTGTGGTCCTCTATCCTTGCCCAATTGGCCTCCAAGG
AAGGGGGGGAAGAGTTGGCTGCGGCTTCGGTGGCAGTTGAAATCTCTGGG
GCTGCTCCCAATGCTCTCGAAACCAGCCAGACTTCTGCTTCCGCCTTGCC
TCCTTCCTGTTCTCAGATGGTTCCTAATGCATCGGTCACAGCATATTTCG
CAGAGAACCGCACCGAGGAGGATGCAGCAATGCAGGAAGCGATAGCAGCA
ACAGCAAGAGATTCAATGCCTTCACTGTTGCCCATCACGGCCGACGAGCT
TTCCTCAGCTCCTGGGCTTGACGTTGTTAATCCTCATGACGGAGAGACAG
GAGAAGAGAAAGGCGTCAACTTGCTGGTACAGTTGGGAAGAAAGGAGGCG
GGGGGGCGGTGA
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Synonyms
Publications