NO09G00790.1, NO09G00790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00790.1
Unique NameNO09G00790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length324
Alignment locationchr9:281245..281568 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:281245..281568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00790.1 vs.
Match: EWM27726.1 (hypothetical protein Naga_100034g10 [Nannochloropsis gaditana])

HSP 1 Score: 62.8 bits (151), Expect = 7.700e-7
Identity = 41/91 (45.05%), Postives = 57/91 (62.64%), Query Frame = 0 
Query:    5 DEQDELDFDDDEDLPSHPTPPPVNKEPNKHSEDAEKNTDKPRGGEMEGRRG----SKRSRSGKRPPRDAPRPINILFCSYRDYLVALRRAG 92
            ++++ELDFDDDEDLP  P PPPV ++ +    D   +  K +G E +G        K SR  K+ PR A R ++ L+CSY+DYL ALR+AG
Sbjct:   15 EDENELDFDDDEDLPPFPPPPPV-EQAHSPPPDGRTHEVKRKGLEEKGTGSLKALEKHSRVNKQAPRSASRTLDPLYCSYQDYLQALRQAG 104
The following BLAST results are available for this feature:
BLAST of NO09G00790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27726.17.700e-745.05hypothetical protein Naga_100034g10 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00790NO09G00790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00790.1NO09G00790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00790.1.cds1NO09G00790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00790.1 ID=NO09G00790.1|Name=NO09G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=324bp
ATGGACCCACACGACGAACAAGACGAGCTGGATTTCGACGACGATGAGGA
CCTACCATCTCATCCGACGCCGCCGCCCGTTAACAAAGAGCCAAACAAGC
ATTCAGAAGACGCCGAGAAGAATACGGATAAGCCAAGGGGTGGGGAGATG
GAGGGGAGGAGAGGGAGCAAGCGCAGCCGCAGTGGCAAAAGACCACCGCG
GGATGCGCCTCGACCCATCAACATATTATTTTGCTCGTATCGAGACTATC
TGGTGGCCTTGCGTCGGGCTGGCCTCATTAGGGGAGGGAGCGAAGGAGAC
GGAGGCTCGTCACGCAGACCGTGA
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protein sequence of NO09G00790.1

>NO09G00790.1-protein ID=NO09G00790.1-protein|Name=NO09G00790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=108bp
MDPHDEQDELDFDDDEDLPSHPTPPPVNKEPNKHSEDAEKNTDKPRGGEM
EGRRGSKRSRSGKRPPRDAPRPINILFCSYRDYLVALRRAGLIRGGSEGD
GGSSRRP*
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mRNA from alignment at chr9:281245..281568-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00790.1 ID=NO09G00790.1|Name=NO09G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=324bp|location=Sequence derived from alignment at chr9:281245..281568- (Nannochloropsis oceanica)
ATGGACCCACACGACGAACAAGACGAGCTGGATTTCGACGACGATGAGGA
CCTACCATCTCATCCGACGCCGCCGCCCGTTAACAAAGAGCCAAACAAGC
ATTCAGAAGACGCCGAGAAGAATACGGATAAGCCAAGGGGTGGGGAGATG
GAGGGGAGGAGAGGGAGCAAGCGCAGCCGCAGTGGCAAAAGACCACCGCG
GGATGCGCCTCGACCCATCAACATATTATTTTGCTCGTATCGAGACTATC
TGGTGGCCTTGCGTCGGGCTGGCCTCATTAGGGGAGGGAGCGAAGGAGAC
GGAGGCTCGTCACGCAGACCGTGA
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Coding sequence (CDS) from alignment at chr9:281245..281568-

>NO09G00790.1 ID=NO09G00790.1|Name=NO09G00790.1|organism=Nannochloropsis oceanica|type=CDS|length=324bp|location=Sequence derived from alignment at chr9:281245..281568- (Nannochloropsis oceanica)
ATGGACCCACACGACGAACAAGACGAGCTGGATTTCGACGACGATGAGGA
CCTACCATCTCATCCGACGCCGCCGCCCGTTAACAAAGAGCCAAACAAGC
ATTCAGAAGACGCCGAGAAGAATACGGATAAGCCAAGGGGTGGGGAGATG
GAGGGGAGGAGAGGGAGCAAGCGCAGCCGCAGTGGCAAAAGACCACCGCG
GGATGCGCCTCGACCCATCAACATATTATTTTGCTCGTATCGAGACTATC
TGGTGGCCTTGCGTCGGGCTGGCCTCATTAGGGGAGGGAGCGAAGGAGAC
GGAGGCTCGTCACGCAGACCGTGA
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Synonyms
Publications