NO09G00700.1, NO09G00700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00700.1
Unique NameNO09G00700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1583
Alignment locationchr9:256117..257816 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:256117..257816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00700.1 vs.
Match: EWM27709.1 (integral membrane protein [Nannochloropsis gaditana])

HSP 1 Score: 406.4 bits (1043), Expect = 9.700e-110
Identity = 221/348 (63.51%), Postives = 266/348 (76.44%), Query Frame = 0 
Query:   23 PLLLLALLPFAALILLPVQLATASFLTGAFLSGPRGCLGKKVSSLLSSVRPAGTFPSTALSFTKTPVTITNVCAETSRISKGQLQGPRGALSHLALTSLPEFAAYSANAGRGLWTNSALAILGMALKQRWLTSWGLLHAWVLGVSLWTTLGWRGWALCVFYLVFGSLVTKVKQAEKEALGIAEKRGGARGPENVWGSAAAGTLCAIATLFLPTWIPILLIGYVASLATKLSDTFASEIGKAYGKRTFLITTLKPVPPGTEGAVSLEGTVAGVMGSILMAGAGVGLKLMSLNAVPLVLVAAFVATNVESLLGASLQNERHPWATNEFINFLNTLIGSAVGIALAVSLRV 371
            P  + AL P   +++ P     AS    AF SGPRG + KK+SSLLS+ +     P+   SF    V+    C   +             +S   +  +PE  AYSAN   G   NSALA++G+A+KQRWLTS GLLHAW+LG++LW+TLGWRGWALCV YL+ GSLVTKVKQ+EKEALGIAEKRGGARGPENVWGSAAAGT+CA AT+FLP  + +LL GYVASLATKLSDTFASEIGKAYGKRTFLIT LKPVPPGTEGA+SLEGT+AGV+GSI++A AGVG++ ++  AVP+VLVAAF+ATNVESLLGASLQN+RHPWATNEFINFLNTLIGS +GI + ++LR+
Sbjct:    4 PQPIHALSPLLLILVSPA-CVDASTPAAAFFSGPRGSICKKLSSLLSASKSPKAIPAAVYSFNNGHVSRIYACHPATLTELKGTWRRSMPMSRWVVALIPELGAYSANFLTGFGLNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLPAQLHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGIGMVLALRL 350
The following BLAST results are available for this feature:
BLAST of NO09G00700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27709.19.700e-11063.51integral membrane protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00700NO09G00700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00700.1NO09G00700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00700.1.cds1NO09G00700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00700.1.cds2NO09G00700.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00700.1 ID=NO09G00700.1|Name=NO09G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1583bp
AGAGCTCCACACGTACCGTCTAGGGCAGCGGGGACCAAGCCCCGACCTTT
ATTCCTCGACTACGCATTCATCTTCGTTCCTGCCCGCACCGGCGTCAAGA
TGCCTACAGTGAACTGCAACTCGACGCTGCTGCTTCCACGGAGGAGAAAA
TTCCTGTACATGCGTCCACTGCTGCTCCTTGCGCTGCTCCCTTTCGCCGC
TCTTATTCTTCTTCCTGTACAGCTGGCCACGGCCTCTTTCTTGACGGGAG
CATTTCTAAGCGGACCACGGGGTTGTCTAGGTAAAAAGGTCTCGAGCCTC
CTCTCCTCTGTTCGACCTGCTGGTACCTTCCCCTCCACCGCGCTGTCCTT
CACTAAAACACCTGTGACGATTACCAACGTATGTGCCGAGACATCAAGGA
TATCAAAAGGTCAGCTACAGGGGCCACGCGGTGCGCTCTCTCATCTGGCC
CTAACCAGCTTGCCGGAGTTTGCGGCGTATTCGGCCAACGCGGGGAGAGG
GTTGTGGACTAACTCAGCACTGGCCATCCTAGGAATGGCATTGAAACAAC
GATGGTTGACCTCGTGGGGATTGTTGCATGCCTGGGTGCTTGGGGTGTCA
CTATGGACGACGCTGGGCTGGCGGGGCTGGGCCTTGTGTGTGTTCTATTT
GGTGTTTGGGTCGCTTGTCACCAAGGTGAAGCAGGCGGAGAAGGAGGCGT
TGGGCATCGCGGAGAAACGGGGCGGAGCAAGAGGACCAGAGAATGTTTGG
GGATCAGCGGCAGCGGGCACGCTGTGCGCTATCGCCACCCTCTTTCTTCC
CACCTGGATCCCCATCCTTCTCATCGGGTATGTTGCTTCGCTCGCCACCA
AGCTGTCCGACACTTTCGCAAGTGAGATTGGCAAGGCCTACGGGAAACGA
ACTTTCCTTATCACGACGCTCAAGCCCGTTCCTCCTGGCACGGAGGGCGC
CGTCAGTCTAGAAGGCACCGTGGCGGGCGTGATGGGTTCTATTCTCATGG
CTGGGGCGGGGGTAGGGTTGAAGTTGATGAGCTTGAATGCTGTCCCGCTC
GTGTTGGTGGCCGCCTTCGTGGCTACGAATGTCGAGAGCCTCCTGGGGGC
GAGTCTGCAGAATGAACGGCACCCGTGGGCGACGAACGAGTTCATCAACT
TTTTGAACACCTTGATCGGTAGTGCGGTTGGTATTGCCTTGGCGGTCTCA
TTAAGAGTGCTGGTGTGACTGACATGCATCACAGGGAGAGAATAGGAAAG
AGAGAAAGTAAGGAAATTGGGTACAAGAGGGAAGGATCGAAGTGCTTCGC
ACCACAAGCCTGGAGAAGCAAGGCAAGGAACAAGGAAGAGTACGCGAGAC
GAACTAAATAAAGAGATAGATACCAAAAACTATTTCCAATGGTCACGATG
CGTCCGAAACAACAAAGCGATGGAAAGGCTTTGGCAGTTTTCTTGGGGTT
GTTGGATGCCTGAGAGTCAAAAGAAATGGTCAGTGGGCAAGACTCCGGAG
AGTGACAAACCCAATGATACACACAGACAGACAAATTTTCAATAAAATTC
GTGTGTGCATCACGAAAAGACTCGGTTTTGGTT
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protein sequence of NO09G00700.1

>NO09G00700.1-protein ID=NO09G00700.1-protein|Name=NO09G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MPTVNCNSTLLLPRRRKFLYMRPLLLLALLPFAALILLPVQLATASFLTG
AFLSGPRGCLGKKVSSLLSSVRPAGTFPSTALSFTKTPVTITNVCAETSR
ISKGQLQGPRGALSHLALTSLPEFAAYSANAGRGLWTNSALAILGMALKQ
RWLTSWGLLHAWVLGVSLWTTLGWRGWALCVFYLVFGSLVTKVKQAEKEA
LGIAEKRGGARGPENVWGSAAAGTLCAIATLFLPTWIPILLIGYVASLAT
KLSDTFASEIGKAYGKRTFLITTLKPVPPGTEGAVSLEGTVAGVMGSILM
AGAGVGLKLMSLNAVPLVLVAAFVATNVESLLGASLQNERHPWATNEFIN
FLNTLIGSAVGIALAVSLRVLV*
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mRNA from alignment at chr9:256117..257816+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00700.1 ID=NO09G00700.1|Name=NO09G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1700bp|location=Sequence derived from alignment at chr9:256117..257816+ (Nannochloropsis oceanica)
AGAGCTCCACACGTACCGTCTAGGGCAGCGGGGACCAAGCCCCGACCTTT
ATTCCTCGACTACGCATTCATCTTCGTTCCTGCCCGCACCGGCGTCAAGA
TGCCTACAGTGAACTGCAACTCGACGCTGCTGCTTCCACGGAGGAGAAAA
TTCCTGTACATGCGTCCACTGCTGCTCCTTGCGCTGCTCCCTTTCGCCGC
TCTTATTCTTCTTCCTGTACAGCTGGCCACGGCCTCTTTCTTGACGGGAG
CATTTCTAAGCGGACCACGGGGTTGTCTAGGTAAAAAGGTCTCGAGCCTC
CTCTCCTCTGTTCGACCTGCTGGTACCTTCCCCTCCACCGCGCTGTCCTT
CACTAAAACACCTGTGACGATTACCAACGTATGTGCCGAGACATCAAGGA
TATCAAAAGGTCAGCTACAGGGGCCACGCGGTGCGCTCTCTCATCTGGCC
CTAACCAGCTTGCCGGAGTTTGCGGCGTATTCGGCCAACGCGGGGAGAGG
GTTGTGGACTAACTCAGCACTGGCCATCCTAGGAATGGCATTGAAACAAC
GATGGTTGACCTCGTGGGGATTGTTGCATGCCTGGGTGCTTGGGGTGTCA
CTATGGACGACGCTGGGCTGGCGGGGCTGGGCCTTGTGTGTGTTCTATTT
GGTGTTTGGGTCGCTTGTCACCAAGGTGAAGCAGGCGGAGAAGGAGGCGT
TGGGCATCGCGGAGAAACGGGGCGGAGCAAGAGGACCAGAGAATGTTTGG
GGATCAGCGGCAGCGGTAGGTTTTGTTTTGTGTCTGGCGGGAAGATCAAG
GAGGACCTCGAGTCATATTTTGCAACCCATTCACCCAGTCACCCTGTGAA
ACATACATGTGTGTGTATGTATTTATATACAGGGCACGCTGTGCGCTATC
GCCACCCTCTTTCTTCCCACCTGGATCCCCATCCTTCTCATCGGGTATGT
TGCTTCGCTCGCCACCAAGCTGTCCGACACTTTCGCAAGTGAGATTGGCA
AGGCCTACGGGAAACGAACTTTCCTTATCACGACGCTCAAGCCCGTTCCT
CCTGGCACGGAGGGCGCCGTCAGTCTAGAAGGCACCGTGGCGGGCGTGAT
GGGTTCTATTCTCATGGCTGGGGCGGGGGTAGGGTTGAAGTTGATGAGCT
TGAATGCTGTCCCGCTCGTGTTGGTGGCCGCCTTCGTGGCTACGAATGTC
GAGAGCCTCCTGGGGGCGAGTCTGCAGAATGAACGGCACCCGTGGGCGAC
GAACGAGTTCATCAACTTTTTGAACACCTTGATCGGTAGTGCGGTTGGTA
TTGCCTTGGCGGTCTCATTAAGAGTGCTGGTGTGACTGACATGCATCACA
GGGAGAGAATAGGAAAGAGAGAAAGTAAGGAAATTGGGTACAAGAGGGAA
GGATCGAAGTGCTTCGCACCACAAGCCTGGAGAAGCAAGGCAAGGAACAA
GGAAGAGTACGCGAGACGAACTAAATAAAGAGATAGATACCAAAAACTAT
TTCCAATGGTCACGATGCGTCCGAAACAACAAAGCGATGGAAAGGCTTTG
GCAGTTTTCTTGGGGTTGTTGGATGCCTGAGAGTCAAAAGAAATGGTCAG
TGGGCAAGACTCCGGAGAGTGACAAACCCAATGATACACACAGACAGACA
AATTTTCAATAAAATTCGTGTGTGCATCACGAAAAGACTCGGTTTTGGTT
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Coding sequence (CDS) from alignment at chr9:256117..257816+

>NO09G00700.1 ID=NO09G00700.1|Name=NO09G00700.1|organism=Nannochloropsis oceanica|type=CDS|length=1119bp|location=Sequence derived from alignment at chr9:256117..257816+ (Nannochloropsis oceanica)
ATGCCTACAGTGAACTGCAACTCGACGCTGCTGCTTCCACGGAGGAGAAA
ATTCCTGTACATGCGTCCACTGCTGCTCCTTGCGCTGCTCCCTTTCGCCG
CTCTTATTCTTCTTCCTGTACAGCTGGCCACGGCCTCTTTCTTGACGGGA
GCATTTCTAAGCGGACCACGGGGTTGTCTAGGTAAAAAGGTCTCGAGCCT
CCTCTCCTCTGTTCGACCTGCTGGTACCTTCCCCTCCACCGCGCTGTCCT
TCACTAAAACACCTGTGACGATTACCAACGTATGTGCCGAGACATCAAGG
ATATCAAAAGGTCAGCTACAGGGGCCACGCGGTGCGCTCTCTCATCTGGC
CCTAACCAGCTTGCCGGAGTTTGCGGCGTATTCGGCCAACGCGGGGAGAG
GGTTGTGGACTAACTCAGCACTGGCCATCCTAGGAATGGCATTGAAACAA
CGATGGTTGACCTCGTGGGGATTGTTGCATGCCTGGGTGCTTGGGGTGTC
ACTATGGACGACGCTGGGCTGGCGGGGCTGGGCCTTGTGTGTGTTCTATT
TGGTGTTTGGGTCGCTTGTCACCAAGGTGAAGCAGGCGGAGAAGGAGGCG
TTGGGCATCGCGGAGAAACGGGGCGGAGCAAGAGGACCAGAGAATGTTTG
GGGATCAGCGGCAGCGGGCACGCTGTGCGCTATCGCCACCCTCTTTCTTC
CCACCTGGATCCCCATCCTTCTCATCGGGTATGTTGCTTCGCTCGCCACC
AAGCTGTCCGACACTTTCGCAAGTGAGATTGGCAAGGCCTACGGGAAACG
AACTTTCCTTATCACGACGCTCAAGCCCGTTCCTCCTGGCACGGAGGGCG
CCGTCAGTCTAGAAGGCACCGTGGCGGGCGTGATGGGTTCTATTCTCATG
GCTGGGGCGGGGGTAGGGTTGAAGTTGATGAGCTTGAATGCTGTCCCGCT
CGTGTTGGTGGCCGCCTTCGTGGCTACGAATGTCGAGAGCCTCCTGGGGG
CGAGTCTGCAGAATGAACGGCACCCGTGGGCGACGAACGAGTTCATCAAC
TTTTTGAACACCTTGATCGGTAGTGCGGTTGGTATTGCCTTGGCGGTCTC
ATTAAGAGTGCTGGTGTGA
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Synonyms
Publications