NO09G00660.1, NO09G00660.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO09G00660.1
Unique Name	NO09G00660.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1854
Alignment location	chr9:242916..244942 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr9	genome	chr9:242916..244942 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO09G00660.1 vs.
Match: EWM27741.1 (pheophorbide a oxygenase [Nannochloropsis gaditana])

HSP 1 Score: 798.1 bits (2060), Expect = 1.900e-227
Identity = 411/612 (67.16%), Postives = 456/612 (74.51%), Query Frame = 0

Query:   10 LMVLGLVLPYTSQAFVGGQLPKSLFPKQQSRRASTAGTSNLVSAT---TPTSSSVAFTGSSSNDDVHEAFDWWKQWYPVALTRDLDSAVPTKVTLLGRDLVLWKEGAVAAAASGNPPAWRCFIDRCPHRMAPLSEGRVDSKTGHLQCAYHGWEFGGSGACSKIPQADPDADQSEATARRSRRACATALPSQEAQGMIWVWPDTSDKGLAASKVVKPTLMEDVDEKAMSYLVVCRDMPYGFETLLENGIDPSHLPFAHHNIISNRNQAAFIDIKVDEIRNDGFDSAQFFPKRRRM--LPSVAEAAPAGGGGSARQQRQEPKTVEHGSGNLDQHRIGSLVDDAHDDDNNKEESATAAAHGDPGGHRRKRTLPPMVKVAQSLHFRPPTLLYQVINVTEILNKLPLLPKRERLIRIVTYAVPTGPGRSRVIYRFLRNYFLPPLAWLRWPPEWIEHQRILRVLDSDTVFLHGQERERALLDPSTVQDVDKTYYMPTAADGSVRALRKWLARFGTPKWLISGLPSSLPQTPDRRTLLDRYASHTAHCKVCRGALRNLGRLRHGIGFMSVMAFYLGLLGQSVYTRLAGGFLTVLGITGSLIIKGFEERFYFQPWDHGRN 617
            + VL   LP  S+AFVGG + K     Q      T  + N+ +A    +P S   A       DD  +AFDWWKQWYPVALTRD+D AVPTKV LLGRDLVLW+EG  A A  G    WRCF+DRCPHR+APLSEGR+D++TGHLQCAYHGWEF GSG CSKIPQ DP+ DQ  A A RSRRACAT+LP+ EAQGMIWVWPDTS +G+ ASK VKPTLM+DVDEK MSYLVVCRDMPYGF+TLLENGIDPSHLPFAHHNIISNRNQAA+ID +VD+I   GFDS QF+PKR R   LP +          S  +Q                    SL  D H D +   +     +   P     +   PP V+V QSLHFRPPTLLYQVINVT I +K+P LPKRERLIRIVTYAVP  PGRSRVIYRFLRNYFLPP +W+RWPPEWI+HQRILRVLDSDTVFLHGQERERALL PS   DVD+ Y+MPTAADGSVRALRKWLARFG P+WL+  L SSLP TPDRRTLLDRY SHT  CK+CRGALRNL RLR  IGFMSVMAFYLGLLGQSVYTRLAGGF TVLGITGS++IK FEERFYFQPWDHGRN
Sbjct:   20 VFVLYACLPSISRAFVGGTMSKFPTFLQTYCHKFTKISLNMPAAARILSPASVIEAKENGIEEDD--DAFDWWKQWYPVALTRDIDGAVPTKVMLLGRDLVLWREGTAADAKKGAVRTWRCFVDRCPHRLAPLSEGRIDTRTGHLQCAYHGWEFSGSGQCSKIPQTDPETDQGGAGALRSRRACATSLPTLEAQGMIWVWPDTSKEGVEASKAVKPTLMKDVDEKEMSYLVVCRDMPYGFDTLLENGIDPSHLPFAHHNIISNRNQAAYIDTQVDKIWKGGFDSNQFYPKRGRKPSLPPI----------SVSEQN-------------------SLTKDKHADAHRMADCINELSERFPD----RPIAPPTVRVPQSLHFRPPTLLYQVINVTAIFDKIPFLPKRERLIRIVTYAVPVAPGRSRVIYRFLRNYFLPPFSWMRWPPEWIQHQRILRVLDSDTVFLHGQERERALLSPSAAADVDRCYFMPTAADGSVRALRKWLARFGGPRWLVPDL-SSLPPTPDRRTLLDRYESHTKSCKICRGALRNLKRLRQLIGFMSVMAFYLGLLGQSVYTRLAGGFFTVLGITGSVVIKRFEERFYFQPWDHGRN 595

The following BLAST results are available for this feature:

BLAST of NO09G00660.1 vs.

BLAST of NO09G00660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27741.1	1.900e-227	67.16	pheophorbide a oxygenase [Nannochloropsis gaditana...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO09G00660	NO09G00660	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO09G00660.1	NO09G00660.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO09G00660.1.cds1	NO09G00660.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G00660.1.cds2	NO09G00660.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr9:242916..244942-
coding sequence from alignment at chr9:242916..244942-

mRNA sequence

>NO09G00660.1 ID=NO09G00660.1|Name=NO09G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1854bp
ATGACTCTGCTGATGTCAATTCCCCTCCTCATGGTCTTGGGCCTAGTGCT
GCCGTACACCTCGCAGGCGTTTGTGGGGGGACAGTTGCCAAAATCTTTAT
TTCCGAAACAACAGAGTCGCCGGGCTAGCACCGCTGGGACTTCGAACTTA
GTGTCAGCCACGACACCAACATCGTCTTCCGTAGCCTTCACGGGCAGCAG
CAGCAATGACGATGTCCATGAAGCATTTGACTGGTGGAAACAATGGTACC
CCGTGGCCCTGACTCGGGATTTAGACAGTGCGGTGCCAACCAAAGTGACG
TTGCTGGGTCGCGACTTGGTGCTATGGAAAGAGGGTGCGGTCGCCGCAGC
AGCCAGCGGTAATCCTCCTGCCTGGCGATGCTTCATCGATCGATGCCCCC
ATCGCATGGCCCCGCTGTCCGAAGGCCGGGTAGACAGCAAGACGGGTCAT
TTGCAATGCGCGTACCACGGCTGGGAATTCGGCGGCTCGGGGGCGTGTAG
CAAAATTCCGCAGGCGGACCCAGACGCCGACCAAAGTGAGGCCACCGCTA
GGCGTTCGAGACGCGCGTGTGCCACGGCCCTGCCCTCGCAAGAGGCTCAA
GGCATGATTTGGGTGTGGCCAGACACCTCGGACAAGGGCCTGGCGGCTTC
AAAGGTAGTAAAGCCGACGCTGATGGAGGACGTAGACGAGAAAGCAATGT
CGTATTTGGTGGTTTGTCGAGATATGCCGTATGGCTTCGAAACCCTGCTC
GAAAACGGCATCGACCCCTCCCATCTCCCCTTCGCCCACCACAATATCAT
CAGCAATCGTAATCAGGCCGCCTTTATTGACATAAAGGTAGACGAGATCC
GGAATGACGGCTTTGATTCCGCTCAATTCTTTCCCAAGCGCCGCCGCATG
CTCCCCTCGGTAGCAGAAGCTGCACCAGCAGGTGGAGGAGGATCGGCACG
ACAACAACGCCAAGAGCCAAAGACTGTCGAGCACGGAAGCGGGAACCTGG
ATCAGCACCGTATAGGCTCTTTGGTAGATGATGCACACGACGATGACAAC
AACAAGGAGGAATCAGCAACAGCAGCAGCACACGGAGACCCGGGAGGACA
CCGACGCAAACGGACCCTCCCCCCCATGGTGAAAGTCGCCCAGTCCCTCC
ACTTCCGGCCCCCCACCCTTCTTTATCAAGTCATTAACGTCACGGAGATT
CTCAACAAATTACCCCTTCTCCCCAAGCGCGAACGACTCATCCGCATAGT
CACATATGCCGTGCCCACTGGCCCCGGCCGGTCTCGGGTCATCTACCGCT
TCCTCCGCAACTACTTCCTCCCTCCCTTGGCCTGGCTCCGATGGCCTCCC
GAGTGGATTGAGCACCAACGCATTCTTCGCGTGCTCGACAGCGACACTGT
CTTCCTTCACGGACAAGAACGGGAGCGGGCATTGCTCGACCCAAGCACTG
TCCAAGACGTCGATAAGACTTATTACATGCCCACCGCTGCTGATGGTTCC
GTGCGCGCCCTCCGGAAATGGCTCGCGCGCTTTGGCACGCCGAAGTGGCT
TATATCTGGTTTACCGTCGTCGCTTCCGCAGACCCCGGATCGACGCACAC
TTTTGGATAGATATGCCTCACACACGGCGCATTGTAAAGTGTGCAGGGGG
GCGTTACGGAATTTGGGGAGGTTGAGGCATGGGATAGGGTTCATGTCGGT
GATGGCTTTTTATCTGGGGTTGCTGGGACAGAGTGTGTACACGCGGTTAG
CCGGGGGATTCTTAACGGTGTTGGGGATAACGGGGAGTTTAATTATCAAG
GGCTTCGAGGAGCGTTTCTATTTTCAGCCATGGGATCATGGGCGGAATCA
CTGA

protein sequence of NO09G00660.1

>NO09G00660.1-protein ID=NO09G00660.1-protein|Name=NO09G00660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=618bp
MTLLMSIPLLMVLGLVLPYTSQAFVGGQLPKSLFPKQQSRRASTAGTSNL
VSATTPTSSSVAFTGSSSNDDVHEAFDWWKQWYPVALTRDLDSAVPTKVT
LLGRDLVLWKEGAVAAAASGNPPAWRCFIDRCPHRMAPLSEGRVDSKTGH
LQCAYHGWEFGGSGACSKIPQADPDADQSEATARRSRRACATALPSQEAQ
GMIWVWPDTSDKGLAASKVVKPTLMEDVDEKAMSYLVVCRDMPYGFETLL
ENGIDPSHLPFAHHNIISNRNQAAFIDIKVDEIRNDGFDSAQFFPKRRRM
LPSVAEAAPAGGGGSARQQRQEPKTVEHGSGNLDQHRIGSLVDDAHDDDN
NKEESATAAAHGDPGGHRRKRTLPPMVKVAQSLHFRPPTLLYQVINVTEI
LNKLPLLPKRERLIRIVTYAVPTGPGRSRVIYRFLRNYFLPPLAWLRWPP
EWIEHQRILRVLDSDTVFLHGQERERALLDPSTVQDVDKTYYMPTAADGS
VRALRKWLARFGTPKWLISGLPSSLPQTPDRRTLLDRYASHTAHCKVCRG
ALRNLGRLRHGIGFMSVMAFYLGLLGQSVYTRLAGGFLTVLGITGSLIIK
GFEERFYFQPWDHGRNH*

mRNA from alignment at chr9:242916..244942-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO09G00660.1 ID=NO09G00660.1|Name=NO09G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=2027bp|location=Sequence derived from alignment at chr9:242916..244942- (Nannochloropsis oceanica)
ATGACTCTGCTGATGTCAATTCCCCTCCTCATGGTCTTGGGCCTAGTGCT
GCCGTACACCTCGCAGGCGTTTGTGGGGGGACAGTTGCCAAAATCTTTAT
TTCCGAAACAACAGAGTCGCCGGGCTAGCACCGCTGGGACTTCGAACTTA
GTGTCAGCCACGACACCAACATCGTCTTCCGTAGCCTTCACGGGCAGCAG
CAGCAATGACGATGTCCATGAAGCATTTGACTGGTGGAAACAATGGTACC
CCGTGGCCCTGACTCGGGATTTAGACAGTGCGGTGCCAACCAAAGTGACG
TTGCTGGGTCGCGACTTGGTGCTATGGAAAGAGGGTGCGGTCGCCGCAGC
AGCCAGCGGTAATCCTCCTGCCTGGCGATGCTTCATCGATCGATGCCCCC
ATCGCATGGCCCCGCTGTCCGAAGGCCGGGTAGACAGCAAGACGGGTCAT
TTGCAATGCGCGTACCACGGCTGGGAATTCGGCGGCTCGGGGGCGTGTAG
CAAAATTCCGCAGGCGGACCCAGACGCCGACCAAAGTGAGGCCACCGCTA
GGCGTTCGAGACGCGCGTGTGCCACGGCCCTGCCCTCGCAAGAGGCTCAA
GGCATGATTTGGGTGTGGCCAGACACCTCGGACAAGGGCCTGGCGGCTTC
AAAGGTAGTAAAGCCGACGCTGATGGAGGACGTAGACGAGAAAGCAATGT
CGTATTTGGTGGTTTGTCGAGATATGCCGGTACGTCATTTGTATACATTC
ATGGGTGGGTGCGAAGAAGAGGAGGTGTGGAGGACGGACACGTTGAGTGA
TGTCCCGTTTCGTCTGTGGGCCACGACAAATCCCTCAATGCATGCCCGCG
GCGTCCACTTTTCTCCATCCCTTATTCCCATGGCACCCGATCCCCCAAAC
AGTATGGCTTCGAAACCCTGCTCGAAAACGGCATCGACCCCTCCCATCTC
CCCTTCGCCCACCACAATATCATCAGCAATCGTAATCAGGCCGCCTTTAT
TGACATAAAGGTAGACGAGATCCGGAATGACGGCTTTGATTCCGCTCAAT
TCTTTCCCAAGCGCCGCCGCATGCTCCCCTCGGTAGCAGAAGCTGCACCA
GCAGGTGGAGGAGGATCGGCACGACAACAACGCCAAGAGCCAAAGACTGT
CGAGCACGGAAGCGGGAACCTGGATCAGCACCGTATAGGCTCTTTGGTAG
ATGATGCACACGACGATGACAACAACAAGGAGGAATCAGCAACAGCAGCA
GCACACGGAGACCCGGGAGGACACCGACGCAAACGGACCCTCCCCCCCAT
GGTGAAAGTCGCCCAGTCCCTCCACTTCCGGCCCCCCACCCTTCTTTATC
AAGTCATTAACGTCACGGAGATTCTCAACAAATTACCCCTTCTCCCCAAG
CGCGAACGACTCATCCGCATAGTCACATATGCCGTGCCCACTGGCCCCGG
CCGGTCTCGGGTCATCTACCGCTTCCTCCGCAACTACTTCCTCCCTCCCT
TGGCCTGGCTCCGATGGCCTCCCGAGTGGATTGAGCACCAACGCATTCTT
CGCGTGCTCGACAGCGACACTGTCTTCCTTCACGGACAAGAACGGGAGCG
GGCATTGCTCGACCCAAGCACTGTCCAAGACGTCGATAAGACTTATTACA
TGCCCACCGCTGCTGATGGTTCCGTGCGCGCCCTCCGGAAATGGCTCGCG
CGCTTTGGCACGCCGAAGTGGCTTATATCTGGTTTACCGTCGTCGCTTCC
GCAGACCCCGGATCGACGCACACTTTTGGATAGATATGCCTCACACACGG
CGCATTGTAAAGTGTGCAGGGGGGCGTTACGGAATTTGGGGAGGTTGAGG
CATGGGATAGGGTTCATGTCGGTGATGGCTTTTTATCTGGGGTTGCTGGG
ACAGAGTGTGTACACGCGGTTAGCCGGGGGATTCTTAACGGTGTTGGGGA
TAACGGGGAGTTTAATTATCAAGGGCTTCGAGGAGCGTTTCTATTTTCAG
CCATGGGATCATGGGCGGAATCACTGA

Coding sequence (CDS) from alignment at chr9:242916..244942-

>NO09G00660.1 ID=NO09G00660.1|Name=NO09G00660.1|organism=Nannochloropsis oceanica|type=CDS|length=1854bp|location=Sequence derived from alignment at chr9:242916..244942- (Nannochloropsis oceanica)
ATGACTCTGCTGATGTCAATTCCCCTCCTCATGGTCTTGGGCCTAGTGCT
GCCGTACACCTCGCAGGCGTTTGTGGGGGGACAGTTGCCAAAATCTTTAT
TTCCGAAACAACAGAGTCGCCGGGCTAGCACCGCTGGGACTTCGAACTTA
GTGTCAGCCACGACACCAACATCGTCTTCCGTAGCCTTCACGGGCAGCAG
CAGCAATGACGATGTCCATGAAGCATTTGACTGGTGGAAACAATGGTACC
CCGTGGCCCTGACTCGGGATTTAGACAGTGCGGTGCCAACCAAAGTGACG
TTGCTGGGTCGCGACTTGGTGCTATGGAAAGAGGGTGCGGTCGCCGCAGC
AGCCAGCGGTAATCCTCCTGCCTGGCGATGCTTCATCGATCGATGCCCCC
ATCGCATGGCCCCGCTGTCCGAAGGCCGGGTAGACAGCAAGACGGGTCAT
TTGCAATGCGCGTACCACGGCTGGGAATTCGGCGGCTCGGGGGCGTGTAG
CAAAATTCCGCAGGCGGACCCAGACGCCGACCAAAGTGAGGCCACCGCTA
GGCGTTCGAGACGCGCGTGTGCCACGGCCCTGCCCTCGCAAGAGGCTCAA
GGCATGATTTGGGTGTGGCCAGACACCTCGGACAAGGGCCTGGCGGCTTC
AAAGGTAGTAAAGCCGACGCTGATGGAGGACGTAGACGAGAAAGCAATGT
CGTATTTGGTGGTTTGTCGAGATATGCCGTATGGCTTCGAAACCCTGCTC
GAAAACGGCATCGACCCCTCCCATCTCCCCTTCGCCCACCACAATATCAT
CAGCAATCGTAATCAGGCCGCCTTTATTGACATAAAGGTAGACGAGATCC
GGAATGACGGCTTTGATTCCGCTCAATTCTTTCCCAAGCGCCGCCGCATG
CTCCCCTCGGTAGCAGAAGCTGCACCAGCAGGTGGAGGAGGATCGGCACG
ACAACAACGCCAAGAGCCAAAGACTGTCGAGCACGGAAGCGGGAACCTGG
ATCAGCACCGTATAGGCTCTTTGGTAGATGATGCACACGACGATGACAAC
AACAAGGAGGAATCAGCAACAGCAGCAGCACACGGAGACCCGGGAGGACA
CCGACGCAAACGGACCCTCCCCCCCATGGTGAAAGTCGCCCAGTCCCTCC
ACTTCCGGCCCCCCACCCTTCTTTATCAAGTCATTAACGTCACGGAGATT
CTCAACAAATTACCCCTTCTCCCCAAGCGCGAACGACTCATCCGCATAGT
CACATATGCCGTGCCCACTGGCCCCGGCCGGTCTCGGGTCATCTACCGCT
TCCTCCGCAACTACTTCCTCCCTCCCTTGGCCTGGCTCCGATGGCCTCCC
GAGTGGATTGAGCACCAACGCATTCTTCGCGTGCTCGACAGCGACACTGT
CTTCCTTCACGGACAAGAACGGGAGCGGGCATTGCTCGACCCAAGCACTG
TCCAAGACGTCGATAAGACTTATTACATGCCCACCGCTGCTGATGGTTCC
GTGCGCGCCCTCCGGAAATGGCTCGCGCGCTTTGGCACGCCGAAGTGGCT
TATATCTGGTTTACCGTCGTCGCTTCCGCAGACCCCGGATCGACGCACAC
TTTTGGATAGATATGCCTCACACACGGCGCATTGTAAAGTGTGCAGGGGG
GCGTTACGGAATTTGGGGAGGTTGAGGCATGGGATAGGGTTCATGTCGGT
GATGGCTTTTTATCTGGGGTTGCTGGGACAGAGTGTGTACACGCGGTTAG
CCGGGGGATTCTTAACGGTGTTGGGGATAACGGGGAGTTTAATTATCAAG
GGCTTCGAGGAGCGTTTCTATTTTCAGCCATGGGATCATGGGCGGAATCA
CTGA

Synonyms

Publications