NO09G00610.1, NO09G00610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00610.1
Unique NameNO09G00610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1094
Alignment locationchr9:233369..234608 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:233369..234608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00610.1 vs.
Match: EWM27730.1 (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana])

HSP 1 Score: 308.1 bits (788), Expect = 2.500e-80
Identity = 158/221 (71.49%), Postives = 182/221 (82.35%), Query Frame = 0 
Query:    8 SPLQHETQTTNVMKSMSAAFAISIVIGSNRGIGLELCKQLHARGDCVVGVCRKASDELKGLGLWKVVEGVDVTKDEQVRSLATLDLGGGAVDSLFLNAGIGDGIEDSL-GNLDYAQIMRSFDVNACGPLRCVQTLLPRLKKGSKVLLVTSRMGSVDDNTSGGSYGYRMSKSALNIAGKSLSLDLHPKGVSVLVLHPGFVKTDMTRPYWGGRGIVSPAESAE 228
            SP+  +  T   MK +S+AF  SIVIG NRGIGLELCKQLH RGD VVGVCRKASDELK LGLWKV+E +D+T +E  R L   +LG   VD+L+LNAGIGDGIEDSL   L+Y QI+RSF+ NA GPLRCVQ+ LP LK+GSKVLLVTSRMGSV+DNTSGGSYGYRMSK+ALNI GKSLSLDL  KG++VLVLHPGFVKTDMT+ YWG +GI+SPA SA+
Sbjct:   75 SPISPDLVTRAEMKGISSAFTTSIVIGCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVEEDTRRLGADNLG--TVDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGPLRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGKSLSLDLLHKGIAVLVLHPGFVKTDMTKLYWGEKGIISPATSAQ 293
The following BLAST results are available for this feature:
BLAST of NO09G00610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27730.12.500e-8071.49short-chain dehydrogenase reductase sdr [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00610NO09G00610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00610.1NO09G00610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00610.1.cds1NO09G00610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00610.1.cds2NO09G00610.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00610.1 ID=NO09G00610.1|Name=NO09G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1094bp
TCCTACATAAACACATTTCTCCATTTTCATATATCGTGTTGCTGTCCTTG
CTTTGTATGCGTGTATGACTGTTTTGTGAGGGAAAGCTAGGTTGGCCCCA
CTGGTCCCTACTGGAACCCACTGGAACCCACTGGAAGGCCACGAACAGGA
CATACCGACCTGGCTTCCTTCTCCAATTTTGACCTGCTCCAGATCTAGCC
ATATCTAGCCCTCCCTCTCACATGCTGCTCACTTCATCTTCCTCTCCCCT
TCAACACGAAACACAGACCACCAACGTGATGAAGAGTATGTCCGCGGCTT
TCGCCATTTCCATCGTCATCGGATCTAACCGTGGCATCGGATTGGAGCTA
TGCAAGCAGTTACATGCACGAGGGGACTGTGTGGTGGGGGTGTGTAGGAA
AGCGTCAGACGAACTTAAAGGGCTCGGTCTTTGGAAAGTAGTGGAGGGCG
TGGATGTCACCAAGGATGAACAAGTGCGCTCGCTCGCGACACTTGACTTG
GGTGGTGGCGCGGTTGACTCCTTGTTTTTGAATGCGGGGATCGGCGATGG
GATTGAGGACAGCTTGGGCAATCTGGATTACGCACAGATCATGCGGTCTT
TTGATGTGAATGCGTGTGGACCGCTGCGGTGTGTGCAGACGCTCTTGCCG
CGTCTGAAGAAGGGAAGCAAGGTTCTCCTTGTCACCTCGAGGATGGGCTC
TGTGGATGACAACACCTCGGGCGGGTCTTATGGATATCGAATGAGCAAGA
GCGCCTTGAACATTGCGGGCAAGAGTCTTTCTTTGGACCTGCACCCAAAA
GGCGTAAGCGTTCTTGTCCTTCACCCCGGATTTGTCAAGACAGATATGAC
CAGGCCGTATTGGGGTGGAAGAGGCATTGTTTCCCCTGCCGAAAGTGCAG
AAGGGCTGATCAAACGTGCCGATGATCTGACGTTGCGAACTTCTGGACAA
TTTCTGCACGCATTGACAGGGGAAGTGTTACCGTGGTAGGGGAAGAGAGA
CAAGAGTTGCTAAAAGTCTGTTGTTGGGCACGACAAAGAAAGAAGTAAGG
CACGAACCCAACGATGAAATTTATGCTCTTCCTCAAATTTTGTG
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protein sequence of NO09G00610.1

>NO09G00610.1-protein ID=NO09G00610.1-protein|Name=NO09G00610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MLLTSSSSPLQHETQTTNVMKSMSAAFAISIVIGSNRGIGLELCKQLHAR
GDCVVGVCRKASDELKGLGLWKVVEGVDVTKDEQVRSLATLDLGGGAVDS
LFLNAGIGDGIEDSLGNLDYAQIMRSFDVNACGPLRCVQTLLPRLKKGSK
VLLVTSRMGSVDDNTSGGSYGYRMSKSALNIAGKSLSLDLHPKGVSVLVL
HPGFVKTDMTRPYWGGRGIVSPAESAEGLIKRADDLTLRTSGQFLHALTG
EVLPW*
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mRNA from alignment at chr9:233369..234608+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00610.1 ID=NO09G00610.1|Name=NO09G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1240bp|location=Sequence derived from alignment at chr9:233369..234608+ (Nannochloropsis oceanica)
TCCTACATAAACACATTTCTCCATTTTCATATATCGTGTTGCTGTCCTTG
CTTTGTATGCGTGTATGACTGTTTTGTGAGGGAAAGCTAGGTTGGCCCCA
CTGGTCCCTACTGGAACCCACTGGAACCCACTGGAAGGCCACGAACAGGA
CATACCGACCTGGCTTCCTTCTCCAATTTTGACCTGCTCCAGATCTAGCC
ATATCTAGCCCTCCCTCTCACATGCTGCTCACTTCATCTTCCTCTCCCCT
TCAACACGAAACACAGACCACCAACGTGATGAAGAGTATGTCCGCGGCTT
TCGCCATTTCCATCGTCATCGGATCTAACCGTGGCATCGGATTGGAGCTA
TGCAAGCAGTTACATGCACGAGGGGACTGTGTGGTGGGGGTGTGTAGGAA
AGCGTCAGACGAACTTAAAGGGCTCGGTCTTTGGAAAGTAGTGGAGGGCG
TGGATGTCACCAAGGATGAACAAGTGCGCTCGCTCGCGACACTTGACTTG
GGTGGTGGCGCGGTTGACTCCTTGTTTTTGAATGCGGGGATCGGCGATGG
GATTGAGGACAGCTTGGGCAATCTGGATTACGCACAGATCATGCGGTCTT
TTGATGTGAATGCGTGTGGACCGCTGCGGTGTGTGCAGACGCTCTTGCCG
CGTCTGAAGAAGGGAAGCAAGGTAAGCGAGTCTGCGGAGGAGGAGGAGAC
GGGGTGAGAACGTGAATGAGAAGAAGCGGGGGGGGAAAGGCAAGTAAAAT
AAATGCATGCTTTCTTCACTCCCACTCACCACGAGTACTGGTTCACATCA
CACTCCTGTGAATTCAGGTTCTCCTTGTCACCTCGAGGATGGGCTCTGTG
GATGACAACACCTCGGGCGGGTCTTATGGATATCGAATGAGCAAGAGCGC
CTTGAACATTGCGGGCAAGAGTCTTTCTTTGGACCTGCACCCAAAAGGCG
TAAGCGTTCTTGTCCTTCACCCCGGATTTGTCAAGACAGATATGACCAGG
CCGTATTGGGGTGGAAGAGGCATTGTTTCCCCTGCCGAAAGTGCAGAAGG
GCTGATCAAACGTGCCGATGATCTGACGTTGCGAACTTCTGGACAATTTC
TGCACGCATTGACAGGGGAAGTGTTACCGTGGTAGGGGAAGAGAGACAAG
AGTTGCTAAAAGTCTGTTGTTGGGCACGACAAAGAAAGAAGTAAGGCACG
AACCCAACGATGAAATTTATGCTCTTCCTCAAATTTTGTG
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Coding sequence (CDS) from alignment at chr9:233369..234608+

>NO09G00610.1 ID=NO09G00610.1|Name=NO09G00610.1|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at chr9:233369..234608+ (Nannochloropsis oceanica)
ATGCTGCTCACTTCATCTTCCTCTCCCCTTCAACACGAAACACAGACCAC
CAACGTGATGAAGAGTATGTCCGCGGCTTTCGCCATTTCCATCGTCATCG
GATCTAACCGTGGCATCGGATTGGAGCTATGCAAGCAGTTACATGCACGA
GGGGACTGTGTGGTGGGGGTGTGTAGGAAAGCGTCAGACGAACTTAAAGG
GCTCGGTCTTTGGAAAGTAGTGGAGGGCGTGGATGTCACCAAGGATGAAC
AAGTGCGCTCGCTCGCGACACTTGACTTGGGTGGTGGCGCGGTTGACTCC
TTGTTTTTGAATGCGGGGATCGGCGATGGGATTGAGGACAGCTTGGGCAA
TCTGGATTACGCACAGATCATGCGGTCTTTTGATGTGAATGCGTGTGGAC
CGCTGCGGTGTGTGCAGACGCTCTTGCCGCGTCTGAAGAAGGGAAGCAAG
GTTCTCCTTGTCACCTCGAGGATGGGCTCTGTGGATGACAACACCTCGGG
CGGGTCTTATGGATATCGAATGAGCAAGAGCGCCTTGAACATTGCGGGCA
AGAGTCTTTCTTTGGACCTGCACCCAAAAGGCGTAAGCGTTCTTGTCCTT
CACCCCGGATTTGTCAAGACAGATATGACCAGGCCGTATTGGGGTGGAAG
AGGCATTGTTTCCCCTGCCGAAAGTGCAGAAGGGCTGATCAAACGTGCCG
ATGATCTGACGTTGCGAACTTCTGGACAATTTCTGCACGCATTGACAGGG
GAAGTGTTACCGTGGTAG
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Synonyms
Publications