NO09G00600.1, NO09G00600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00600.1
Unique NameNO09G00600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1974
Alignment locationchr9:230346..233047 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:230346..233047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00600.1 vs.
Match: EWM27745.1 (Protein of unknown function DUF1394 [Nannochloropsis gaditana])

HSP 1 Score: 382.1 bits (980), Expect = 3.500e-102
Identity = 210/344 (61.05%), Postives = 261/344 (75.87%), Query Frame = 0 
Query:  317 MGQRLSARKCGGGSA-DQGADALLWDLFPTSISNPA--TLSEDPEETRLHASMAELLRESVFCLRAVREYKENTELLRAAMASPKDEVLQLQGFSSLLPSIVNIKRAYDLSTRLADELPRLLSYLAARRASLRKHPALFKQLADVLEFSLSFDFEKMGRPALQNDFSYYRRYLGRMAPLIGGGGLAVPEAEAGIISLFMAQSLPMTMTVEKALKDVSKAPAGEGLGSVSQSVQLVGLLANVTCDLALRPGVDDELRWYALRVMTSSVVIYDRVSETGVFNRRSPVRTRKCLRTLRKEQEGTTGASENVSSSVPLAKQLLDSVKYSTLHLRDGSTPGYIRTLLSD 658
            MGQ +S R C GGS  D GAD LL D     +++ A  T ++D +  +LH  M  LL+ESV C+RAVREY++NTELLRAAM +P +E LQLQ F+ L+PS+ NIKRA+ LS  L+ ELP+LLSYL ARR +LR++ AL K LAD+L+FSLSFDFEKM +P++QNDFSY+RRYL +MAP +  G + V EAEAG+ISLF+AQ LPMT+TVEKAL+ + +        S+  ++QLVGLLANV+CDLALRPG+  +LR +ALRVMTSSVVIYDRVSE GVF RRSPVRTRKCLR LRKE+E +        S   LA+QLLDSVKYSTLH +D STP YIR+LL+D
Sbjct:    1 MGQLMSIRGCAGGSGGDIGADELLLDHTCNDVTSTAGRTPTDDVQGEKLHQIMKGLLQESVCCIRAVREYQDNTELLRAAMKAPSNEALQLQAFACLMPSVANIKRAHALSICLSQELPQLLSYLIARRNNLRRNHALMKVLADILDFSLSFDFEKMRKPSIQNDFSYFRRYLNKMAPRMPDGEVQVQEAEAGMISLFIAQGLPMTVTVEKALRSLGEVSGSP--DSLCHALQLVGLLANVSCDLALRPGLGVDLRRFALRVMTSSVVIYDRVSEAGVFTRRSPVRTRKCLRILRKEEEAS-------RSDAMLARQLLDSVKYSTLHYKDCSTPSYIRSLLND 335
The following BLAST results are available for this feature:
BLAST of NO09G00600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27745.13.500e-10261.05Protein of unknown function DUF1394 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00600NO09G00600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00600.1NO09G00600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00600.1.cds1NO09G00600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00600.1.cds2NO09G00600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00600.1.cds3NO09G00600.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00600.1 ID=NO09G00600.1|Name=NO09G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1974bp
ATGAAGGCCCTACCAATGGTCCAGGCGACTGTCACGGCATTTCTTGGTGC
AACCTCGGGGGGCAGACACTCAGCTCTCTGGGGCTTGTCACGGTTGGGGC
AGCGACCACCATGCCGAGAAACGGCGTCTCCTTTTTTGGCCAGCGGCAGC
AGCCTCTTTCAGCGGCGGCGGTCGTTGTCGGTGCGAAACATGCATGAAGC
CTTGACCGAGGTCAGCCCTGAGTTAATGATACAGCTAGCGGGCTGCGCGG
TCATGGTTGGTACCGGAAAAGTGTTGCAGGTCAAGGAGGAGAAGGAAGGC
ATCGAGCCGGCTGCGCCTTGGGCGTTGAAGGAGGAGGGGCTGGAGAAAGC
CGTTGATCTGTACCGGGACACAGCGGTGCGGTATTTTGGATACGCTAACG
AAGTCGGGGAGGCGTTCCGACCATTGGTCCCTGCTCCCCTTGTGACATTC
TCCTACTTGGTAGCCTTCGCCTATATTGCTGCTGATTCCTACTCACAGGG
CGCGAAGGTGGTGGATTTACCGTCGGGGGGGGAATGGAAAAAGCCGTCTA
TGCTGGCAAGTGTTGACTCTTTGCTTTTTCAGATTATGGCTTCGGTTATT
TTCCCGTCTTTCACCATTAATAGATGGGTGGTTTTTCTAGGGACGGCTCT
CTCAGAGCTCCAACAGGATCAGTTTGCCAGCCTCCCACCCGAGCTGGTGC
AATATCTGCCAACGGCTACCGGCCTGCTCATCATCCCTATAATTTGTGGA
CCTTTGGACGTGCTCACGCACCGGCTACTGGATGGTTCGTTTCGGTGGGT
GAGTGAGACCATCCTGGCTAAGGATCGCTTTCCTGTCCGGCCACCTAGTC
ACATTACAGGCGGGAGGGAGCCGACGTGGAATGGTGGGCAAAGTAGGAAG
ATGCCTCGTCTCGGAAAGTTTGCTGGATTTCAGTGCATCGTAGCAGAAAT
GGGACAGCGACTGAGCGCCCGCAAGTGTGGGGGAGGGAGCGCGGACCAGG
GTGCCGATGCATTGCTCTGGGACCTTTTCCCGACTTCCATTTCGAACCCA
GCCACCCTTTCTGAAGACCCAGAAGAAACGCGCTTGCACGCGTCCATGGC
AGAGCTTCTACGAGAAAGTGTATTTTGCCTACGGGCCGTCCGCGAGTACA
AGGAGAATACAGAGTTGCTGCGCGCCGCCATGGCGTCGCCCAAGGATGAA
GTCCTCCAACTCCAGGGGTTTTCCTCCCTCTTGCCGAGTATTGTCAACAT
AAAAAGGGCATACGACCTCTCCACACGCCTAGCCGACGAGCTTCCCCGTC
TCCTAAGCTATCTAGCGGCACGAAGAGCAAGTTTACGGAAGCATCCAGCC
CTCTTCAAGCAGCTAGCAGACGTCCTCGAGTTTTCCCTGTCGTTTGATTT
CGAAAAAATGGGACGGCCCGCGCTGCAAAATGATTTTTCGTACTACAGGC
GTTATCTTGGCAGGATGGCTCCTTTGATAGGCGGAGGGGGGCTCGCGGTG
CCAGAGGCCGAAGCGGGGATCATCTCACTTTTTATGGCGCAGAGCTTGCC
GATGACGATGACTGTGGAAAAGGCCTTGAAGGATGTTAGTAAGGCGCCAG
CAGGAGAGGGGTTGGGCAGTGTATCTCAATCGGTGCAGCTGGTGGGGTTA
CTGGCGAATGTGACATGTGATTTGGCGTTAAGGCCGGGGGTGGACGATGA
GCTGCGGTGGTATGCCTTGCGGGTGATGACCTCCTCAGTAGTGATCTACG
ACCGAGTGAGTGAAACTGGGGTGTTTAACCGTCGGTCACCCGTGAGGACA
CGGAAGTGCCTGCGGACCCTCCGGAAAGAGCAGGAAGGTACAACAGGGGC
AAGTGAAAATGTGTCATCATCGGTCCCCCTGGCGAAGCAATTGCTTGATT
CGGTCAAGTATTCCACCCTTCATCTCCGGGATGGGTCCACCCCCGGCTAC
ATCCGCACCCTTTTGAGCGACTAG
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protein sequence of NO09G00600.1

>NO09G00600.1-protein ID=NO09G00600.1-protein|Name=NO09G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=658bp
MKALPMVQATVTAFLGATSGGRHSALWGLSRLGQRPPCRETASPFLASGS
SLFQRRRSLSVRNMHEALTEVSPELMIQLAGCAVMVGTGKVLQVKEEKEG
IEPAAPWALKEEGLEKAVDLYRDTAVRYFGYANEVGEAFRPLVPAPLVTF
SYLVAFAYIAADSYSQGAKVVDLPSGGEWKKPSMLASVDSLLFQIMASVI
FPSFTINRWVVFLGTALSELQQDQFASLPPELVQYLPTATGLLIIPIICG
PLDVLTHRLLDGSFRWVSETILAKDRFPVRPPSHITGGREPTWNGGQSRK
MPRLGKFAGFQCIVAEMGQRLSARKCGGGSADQGADALLWDLFPTSISNP
ATLSEDPEETRLHASMAELLRESVFCLRAVREYKENTELLRAAMASPKDE
VLQLQGFSSLLPSIVNIKRAYDLSTRLADELPRLLSYLAARRASLRKHPA
LFKQLADVLEFSLSFDFEKMGRPALQNDFSYYRRYLGRMAPLIGGGGLAV
PEAEAGIISLFMAQSLPMTMTVEKALKDVSKAPAGEGLGSVSQSVQLVGL
LANVTCDLALRPGVDDELRWYALRVMTSSVVIYDRVSETGVFNRRSPVRT
RKCLRTLRKEQEGTTGASENVSSSVPLAKQLLDSVKYSTLHLRDGSTPGY
IRTLLSD*
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mRNA from alignment at chr9:230346..233047+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00600.1 ID=NO09G00600.1|Name=NO09G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2702bp|location=Sequence derived from alignment at chr9:230346..233047+ (Nannochloropsis oceanica)
ATGAAGGCCCTACCAATGGTCCAGGCGACTGTCACGGCATTTCTTGGTGC
AACCTCGGGGGGCAGACACTCAGCTCTCTGGGGCTTGTCACGGTTGGGGC
AGCGACCACCATGCCGAGAAACGGCGTCTCCTTTTTTGGCCAGCGGCAGC
AGCCTCTTTCAGCGGCGGCGGTCGTTGTCGGTGCGAAACATGCATGAAGC
CTTGACCGAGGTCAGCCCTGAGTTAATGATACAGCTAGCGGGCTGCGCGG
TCATGGTTGGTACCGGAAAAGTGTTGCAGGTCAAGGAGGAGAAGGAAGGC
ATCGAGCCGGCTGCGCCTTGGGCGTTGAAGGAGGAGGGGCTGGAGAAAGC
CGTTGATCTGTACCGGGACACAGCGGTGCGGTATTTTGGATACGCTAACG
AAGTCGGGGAGGCGTTCCGACCATTGGTCCCTGCTCCCCTTGTGACATTC
TCCTACTTGGTAGCCTTCGCCTATATTGCTGCTGATTCCTACTCACAGGG
CGCGAAGGTGGTGGATTTACCGTCGGGGGGGGAATGGAAAAAGCCGTCTA
TGCTGGCAAGTGTTGACTCTTTGCTTTTTCAGATTATGGCTTCGGTTATT
TTCCCGTCTTTCACCATTAATAGATGGGTGGTTTTTCTAGGGACGGCTCT
CTCAGAGCTCCAACAGGATCAGTTTGCCAGCCTCCCACCCGAGCTGGTGC
AATATCTGCCAACGGCTACCGGCCTGCTCATCATCCCTATAATTTGTGGA
CCTTTGGACGTGCTCACGCACCGGCTACTGGATGGTTCGTTTCGGTGGGT
GAGTGAGACCATCCTGGCTAAGGATCGGTAAATGAACTAAACTGAAGACG
GATGGGTTGTGATTGCGACGGCAGGAGAGGAAAACTGGGGCGAGAACAAG
TGCATTTGATTTACGACGTGCCCCCTCCTCTTTTCACTCCTTCCAGCAAG
GAGAAGAACGGCAATTTTGGTGCATTCTAAATCAAGTGTAATAAAAGAAG
GGGGCCGCTCCGTCCTTCCTTCCCCGGTTATTGAGATGTGTTGGCTCAAG
AAGAATCAAAGCCAAAGTAAAGATGGGTGAAATGAACAGTGACTGGGACT
CCCCAACTGCGATCTTCGTTCCTGATCGAATTGCCCCCCCCACATGCTTT
CTTGGGGCTTCCTGGCCGCGAGACCAATCCCATGTATGCAACCTGACATC
TGCCCATGTCATACATTTCCCTCCCAAGCTTTCCTGTCCGGCCACCTAGT
CACATTACAGGCGGGAGGGAGCCGACGTGGAATGGTGGGCAAAGTAGGAA
GATGCCTCGTCTCGGAAAGTTTGCTGGATTTCAGTGCATCGGTGAGCATC
GGAGTCCAGGGCACCGGAGTGCATCGGCATATATCATCATCATCATCATC
ATCATCACCATCATCGTCCCTGCCTCACACCCATCACAACCAACTCTGCC
TCGCCCATGACTGTGACTAGGACCGACAAAACCGGCTGACAAACTGATAA
GAAATATTCCCATTCGAACTATAAGAAATTGCACTGATTTCATCATTCGG
GGGCGCCACGTATTTCAGTGCCTTACCCCATGCATATTTGCCAGACAGTC
GTCATGATGGACTAATGCAATAAAACATACTTCACGACATTAACCCCGAC
CCGACACTTGCACAACAGTAGCAGAAATGGGACAGCGACTGAGCGCCCGC
AAGTGTGGGGGAGGGAGCGCGGACCAGGGTGCCGATGCATTGCTCTGGGA
CCTTTTCCCGACTTCCATTTCGAACCCAGCCACCCTTTCTGAAGACCCAG
AAGAAACGCGCTTGCACGCGTCCATGGCAGAGCTTCTACGAGAAAGTGTA
TTTTGCCTACGGGCCGTCCGCGAGTACAAGGAGAATACAGAGTTGCTGCG
CGCCGCCATGGCGTCGCCCAAGGATGAAGTCCTCCAACTCCAGGGGTTTT
CCTCCCTCTTGCCGAGTATTGTCAACATAAAAAGGGCATACGACCTCTCC
ACACGCCTAGCCGACGAGCTTCCCCGTCTCCTAAGCTATCTAGCGGCACG
AAGAGCAAGTTTACGGAAGCATCCAGCCCTCTTCAAGCAGCTAGCAGACG
TCCTCGAGTTTTCCCTGTCGTTTGATTTCGAAAAAATGGGACGGCCCGCG
CTGCAAAATGATTTTTCGTACTACAGGCGTTATCTTGGCAGGATGGCTCC
TTTGATAGGCGGAGGGGGGCTCGCGGTGCCAGAGGCCGAAGCGGGGATCA
TCTCACTTTTTATGGCGCAGAGCTTGCCGATGACGATGACTGTGGAAAAG
GCCTTGAAGGATGTTAGTAAGGCGCCAGCAGGAGAGGGGTTGGGCAGTGT
ATCTCAATCGGTGCAGCTGGTGGGGTTACTGGCGAATGTGACATGTGATT
TGGCGTTAAGGCCGGGGGTGGACGATGAGCTGCGGTGGTATGCCTTGCGG
GTGATGACCTCCTCAGTAGTGATCTACGACCGAGTGAGTGAAACTGGGGT
GTTTAACCGTCGGTCACCCGTGAGGACACGGAAGTGCCTGCGGACCCTCC
GGAAAGAGCAGGAAGGTACAACAGGGGCAAGTGAAAATGTGTCATCATCG
GTCCCCCTGGCGAAGCAATTGCTTGATTCGGTCAAGTATTCCACCCTTCA
TCTCCGGGATGGGTCCACCCCCGGCTACATCCGCACCCTTTTGAGCGACT
AG
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Coding sequence (CDS) from alignment at chr9:230346..233047+

>NO09G00600.1 ID=NO09G00600.1|Name=NO09G00600.1|organism=Nannochloropsis oceanica|type=CDS|length=1974bp|location=Sequence derived from alignment at chr9:230346..233047+ (Nannochloropsis oceanica)
ATGAAGGCCCTACCAATGGTCCAGGCGACTGTCACGGCATTTCTTGGTGC
AACCTCGGGGGGCAGACACTCAGCTCTCTGGGGCTTGTCACGGTTGGGGC
AGCGACCACCATGCCGAGAAACGGCGTCTCCTTTTTTGGCCAGCGGCAGC
AGCCTCTTTCAGCGGCGGCGGTCGTTGTCGGTGCGAAACATGCATGAAGC
CTTGACCGAGGTCAGCCCTGAGTTAATGATACAGCTAGCGGGCTGCGCGG
TCATGGTTGGTACCGGAAAAGTGTTGCAGGTCAAGGAGGAGAAGGAAGGC
ATCGAGCCGGCTGCGCCTTGGGCGTTGAAGGAGGAGGGGCTGGAGAAAGC
CGTTGATCTGTACCGGGACACAGCGGTGCGGTATTTTGGATACGCTAACG
AAGTCGGGGAGGCGTTCCGACCATTGGTCCCTGCTCCCCTTGTGACATTC
TCCTACTTGGTAGCCTTCGCCTATATTGCTGCTGATTCCTACTCACAGGG
CGCGAAGGTGGTGGATTTACCGTCGGGGGGGGAATGGAAAAAGCCGTCTA
TGCTGGCAAGTGTTGACTCTTTGCTTTTTCAGATTATGGCTTCGGTTATT
TTCCCGTCTTTCACCATTAATAGATGGGTGGTTTTTCTAGGGACGGCTCT
CTCAGAGCTCCAACAGGATCAGTTTGCCAGCCTCCCACCCGAGCTGGTGC
AATATCTGCCAACGGCTACCGGCCTGCTCATCATCCCTATAATTTGTGGA
CCTTTGGACGTGCTCACGCACCGGCTACTGGATGGTTCGTTTCGGTGGGT
GAGTGAGACCATCCTGGCTAAGGATCGCTTTCCTGTCCGGCCACCTAGTC
ACATTACAGGCGGGAGGGAGCCGACGTGGAATGGTGGGCAAAGTAGGAAG
ATGCCTCGTCTCGGAAAGTTTGCTGGATTTCAGTGCATCGTAGCAGAAAT
GGGACAGCGACTGAGCGCCCGCAAGTGTGGGGGAGGGAGCGCGGACCAGG
GTGCCGATGCATTGCTCTGGGACCTTTTCCCGACTTCCATTTCGAACCCA
GCCACCCTTTCTGAAGACCCAGAAGAAACGCGCTTGCACGCGTCCATGGC
AGAGCTTCTACGAGAAAGTGTATTTTGCCTACGGGCCGTCCGCGAGTACA
AGGAGAATACAGAGTTGCTGCGCGCCGCCATGGCGTCGCCCAAGGATGAA
GTCCTCCAACTCCAGGGGTTTTCCTCCCTCTTGCCGAGTATTGTCAACAT
AAAAAGGGCATACGACCTCTCCACACGCCTAGCCGACGAGCTTCCCCGTC
TCCTAAGCTATCTAGCGGCACGAAGAGCAAGTTTACGGAAGCATCCAGCC
CTCTTCAAGCAGCTAGCAGACGTCCTCGAGTTTTCCCTGTCGTTTGATTT
CGAAAAAATGGGACGGCCCGCGCTGCAAAATGATTTTTCGTACTACAGGC
GTTATCTTGGCAGGATGGCTCCTTTGATAGGCGGAGGGGGGCTCGCGGTG
CCAGAGGCCGAAGCGGGGATCATCTCACTTTTTATGGCGCAGAGCTTGCC
GATGACGATGACTGTGGAAAAGGCCTTGAAGGATGTTAGTAAGGCGCCAG
CAGGAGAGGGGTTGGGCAGTGTATCTCAATCGGTGCAGCTGGTGGGGTTA
CTGGCGAATGTGACATGTGATTTGGCGTTAAGGCCGGGGGTGGACGATGA
GCTGCGGTGGTATGCCTTGCGGGTGATGACCTCCTCAGTAGTGATCTACG
ACCGAGTGAGTGAAACTGGGGTGTTTAACCGTCGGTCACCCGTGAGGACA
CGGAAGTGCCTGCGGACCCTCCGGAAAGAGCAGGAAGGTACAACAGGGGC
AAGTGAAAATGTGTCATCATCGGTCCCCCTGGCGAAGCAATTGCTTGATT
CGGTCAAGTATTCCACCCTTCATCTCCGGGATGGGTCCACCCCCGGCTAC
ATCCGCACCCTTTTGAGCGACTAG
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Synonyms
Publications