NO09G00580.1, NO09G00580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00580.1
Unique NameNO09G00580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1284
Alignment locationchr9:227230..228513 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:227230..228513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00580.1 vs.
Match: EWM27731.1 (l-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl [Nannochloropsis gaditana])

HSP 1 Score: 381.3 bits (978), Expect = 3.900e-102
Identity = 209/387 (54.01%), Postives = 257/387 (66.41%), Query Frame = 0 
Query:   21 SISLPAAAATTNPAPPSAAPAAVAVADPHTPPIPACMIVDGRA-PAFEQGILRLGLQIGTETITPGQRELLLSLLPEGDVHKLQGFYHDKDRRLALGSLLLQRAATSWVLGQRFKDILIQRTQPYNKPYVEAAGTRLPGWNYNVSHHGDWVVLASEPSGTVGTDVVCLQDRPFQAMTASEYIDLFRRHLTPAERDGLEGLAPKGETAQYRAFFRVWAMKEAYIKALGVGLSFPIRRLECSILDVGKDYLKRVEDEGEEEELMMDGYGMADWKLRFLALPPDGCYLWCTAVGPAPSP-HFQDVGGIGGTAAVGISTVDGDCNPCNGYFSTVPFSAAASQDAALLTATAAAAATKAPASGHTQQRLRRQYHVLSIRDILPWSVQAEWDA 406
            S S P      N   P+     +A +DP  PP+P  +   GRA  A  +G+LRLG++I  E ++P Q  LL+ LL E +  K+Q +YHDKDRRLALGS+LLQRAATSWVLG+RF DI I+RT+ YNKPYV A  +RLP WNYNVSHHGDWVVLASEP   VGTD+V + DRPF+AMTA EY++ F+RHLTPAE  GL  +   GE +QYRAF+RVWAMKEAY+KA+GVGLSFP+RRLECSI+DVG D L  +E +G EEELMMDGY M DW+LR ++LPP   YLWCTAVGP P+  H    G +              C PC+      P  +        +  T+ A AT  PAS      LR++  VL+IRD LP  VQA+WDA
Sbjct:   72 SKSTPENLIEENLHVPTHTELTLAASDPGLPPLPPGL--QGRALAAVHEGVLRLGMRIVAEPLSPDQWNLLIRLLSESEGGKVQRYYHDKDRRLALGSILLQRAATSWVLGKRFSDINIERTRTYNKPYVNAKDSRLPQWNYNVSHHGDWVVLASEPFHAVGTDLVDVGDRPFEAMTALEYLEHFKRHLTPAEWQGLRSVGRDGEASQYRAFYRVWAMKEAYVKAIGVGLSFPVRRLECSIVDVGAD-LTGMETDGVEEELMMDGYIMTDWRLRLVSLPPS--YLWCTAVGPKPTAHHLPSPGNV------------RHCAPCSACLYAPPSPSKG------ICGTSTAIATATPASSAPHDILRKKVCVLTIRDCLPLGVQAQWDA 435
The following BLAST results are available for this feature:
BLAST of NO09G00580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27731.13.900e-10254.01l-aminoadipate-semialdehyde dehydrogenase-phosphop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00580NO09G00580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00580.1NO09G00580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00580.1.cds1NO09G00580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00580.1 ID=NO09G00580.1|Name=NO09G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1284bp
ATGGGGCCATACTGCTGTCCGTGTTGCTGGCCCGTCGCGGCCGTAGCTAC
TCTGGTCCCATCCATATCACTACCCGCAGCAGCGGCGACCACGAATCCAG
CTCCACCATCGGCCGCCCCCGCCGCAGTTGCAGTCGCAGACCCTCACACG
CCGCCCATCCCCGCATGTATGATTGTGGATGGTCGAGCCCCCGCTTTCGA
GCAGGGCATACTCCGGCTGGGCCTGCAGATTGGTACGGAGACCATAACCC
CCGGACAACGGGAGCTACTTCTTTCGCTCTTACCCGAGGGCGATGTACAC
AAGCTGCAGGGTTTCTACCACGACAAGGACAGGCGGCTGGCGTTGGGAAG
CCTGCTACTGCAGCGCGCTGCTACCAGTTGGGTTTTGGGTCAGCGCTTCA
AGGACATCCTAATCCAACGCACACAACCATATAACAAGCCCTATGTGGAA
GCGGCGGGGACACGGCTTCCTGGGTGGAACTACAATGTGTCGCATCACGG
GGATTGGGTAGTGCTGGCCAGCGAGCCTTCGGGTACAGTAGGGACAGATG
TGGTGTGCTTGCAGGATCGGCCTTTCCAGGCCATGACAGCATCGGAGTAT
ATCGACCTTTTCCGCCGTCATTTGACGCCGGCAGAGCGCGATGGATTGGA
GGGATTGGCACCGAAAGGGGAGACTGCTCAGTATCGTGCGTTCTTCCGGG
TGTGGGCGATGAAGGAGGCTTATATCAAGGCATTGGGAGTGGGATTGTCG
TTTCCCATTCGACGATTGGAATGCAGTATCCTGGACGTTGGGAAGGATTA
TTTGAAGAGGGTAGAAGATGAAGGGGAAGAGGAGGAGTTGATGATGGATG
GGTATGGCATGGCCGATTGGAAGCTTCGGTTTTTGGCTTTGCCGCCGGAT
GGATGTTATTTGTGGTGTACCGCCGTGGGACCTGCGCCCTCTCCTCATTT
CCAGGATGTAGGAGGTATCGGAGGGACAGCAGCGGTAGGTATAAGCACGG
TCGATGGTGATTGTAACCCATGCAATGGCTACTTCTCTACCGTCCCCTTC
TCGGCAGCGGCAAGTCAAGATGCTGCGCTGTTAACGGCAACGGCAGCGGC
AGCAGCCACCAAGGCGCCGGCATCGGGCCATACACAACAGAGGTTGCGGA
GGCAGTATCACGTACTTAGCATTCGAGATATTTTACCTTGGTCGGTTCAA
GCTGAGTGGGATGCCTCAGGAGGAGGAAGTGGTAGCACGGAAGCAGCAGC
AGCAGCAGCAGTATCCGTGTCAACTCAAGATTGA
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protein sequence of NO09G00580.1

>NO09G00580.1-protein ID=NO09G00580.1-protein|Name=NO09G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MGPYCCPCCWPVAAVATLVPSISLPAAAATTNPAPPSAAPAAVAVADPHT
PPIPACMIVDGRAPAFEQGILRLGLQIGTETITPGQRELLLSLLPEGDVH
KLQGFYHDKDRRLALGSLLLQRAATSWVLGQRFKDILIQRTQPYNKPYVE
AAGTRLPGWNYNVSHHGDWVVLASEPSGTVGTDVVCLQDRPFQAMTASEY
IDLFRRHLTPAERDGLEGLAPKGETAQYRAFFRVWAMKEAYIKALGVGLS
FPIRRLECSILDVGKDYLKRVEDEGEEEELMMDGYGMADWKLRFLALPPD
GCYLWCTAVGPAPSPHFQDVGGIGGTAAVGISTVDGDCNPCNGYFSTVPF
SAAASQDAALLTATAAAAATKAPASGHTQQRLRRQYHVLSIRDILPWSVQ
AEWDASGGGSGSTEAAAAAAVSVSTQD*
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mRNA from alignment at chr9:227230..228513+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00580.1 ID=NO09G00580.1|Name=NO09G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1284bp|location=Sequence derived from alignment at chr9:227230..228513+ (Nannochloropsis oceanica)
ATGGGGCCATACTGCTGTCCGTGTTGCTGGCCCGTCGCGGCCGTAGCTAC
TCTGGTCCCATCCATATCACTACCCGCAGCAGCGGCGACCACGAATCCAG
CTCCACCATCGGCCGCCCCCGCCGCAGTTGCAGTCGCAGACCCTCACACG
CCGCCCATCCCCGCATGTATGATTGTGGATGGTCGAGCCCCCGCTTTCGA
GCAGGGCATACTCCGGCTGGGCCTGCAGATTGGTACGGAGACCATAACCC
CCGGACAACGGGAGCTACTTCTTTCGCTCTTACCCGAGGGCGATGTACAC
AAGCTGCAGGGTTTCTACCACGACAAGGACAGGCGGCTGGCGTTGGGAAG
CCTGCTACTGCAGCGCGCTGCTACCAGTTGGGTTTTGGGTCAGCGCTTCA
AGGACATCCTAATCCAACGCACACAACCATATAACAAGCCCTATGTGGAA
GCGGCGGGGACACGGCTTCCTGGGTGGAACTACAATGTGTCGCATCACGG
GGATTGGGTAGTGCTGGCCAGCGAGCCTTCGGGTACAGTAGGGACAGATG
TGGTGTGCTTGCAGGATCGGCCTTTCCAGGCCATGACAGCATCGGAGTAT
ATCGACCTTTTCCGCCGTCATTTGACGCCGGCAGAGCGCGATGGATTGGA
GGGATTGGCACCGAAAGGGGAGACTGCTCAGTATCGTGCGTTCTTCCGGG
TGTGGGCGATGAAGGAGGCTTATATCAAGGCATTGGGAGTGGGATTGTCG
TTTCCCATTCGACGATTGGAATGCAGTATCCTGGACGTTGGGAAGGATTA
TTTGAAGAGGGTAGAAGATGAAGGGGAAGAGGAGGAGTTGATGATGGATG
GGTATGGCATGGCCGATTGGAAGCTTCGGTTTTTGGCTTTGCCGCCGGAT
GGATGTTATTTGTGGTGTACCGCCGTGGGACCTGCGCCCTCTCCTCATTT
CCAGGATGTAGGAGGTATCGGAGGGACAGCAGCGGTAGGTATAAGCACGG
TCGATGGTGATTGTAACCCATGCAATGGCTACTTCTCTACCGTCCCCTTC
TCGGCAGCGGCAAGTCAAGATGCTGCGCTGTTAACGGCAACGGCAGCGGC
AGCAGCCACCAAGGCGCCGGCATCGGGCCATACACAACAGAGGTTGCGGA
GGCAGTATCACGTACTTAGCATTCGAGATATTTTACCTTGGTCGGTTCAA
GCTGAGTGGGATGCCTCAGGAGGAGGAAGTGGTAGCACGGAAGCAGCAGC
AGCAGCAGCAGTATCCGTGTCAACTCAAGATTGA
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Coding sequence (CDS) from alignment at chr9:227230..228513+

>NO09G00580.1 ID=NO09G00580.1|Name=NO09G00580.1|organism=Nannochloropsis oceanica|type=CDS|length=1284bp|location=Sequence derived from alignment at chr9:227230..228513+ (Nannochloropsis oceanica)
ATGGGGCCATACTGCTGTCCGTGTTGCTGGCCCGTCGCGGCCGTAGCTAC
TCTGGTCCCATCCATATCACTACCCGCAGCAGCGGCGACCACGAATCCAG
CTCCACCATCGGCCGCCCCCGCCGCAGTTGCAGTCGCAGACCCTCACACG
CCGCCCATCCCCGCATGTATGATTGTGGATGGTCGAGCCCCCGCTTTCGA
GCAGGGCATACTCCGGCTGGGCCTGCAGATTGGTACGGAGACCATAACCC
CCGGACAACGGGAGCTACTTCTTTCGCTCTTACCCGAGGGCGATGTACAC
AAGCTGCAGGGTTTCTACCACGACAAGGACAGGCGGCTGGCGTTGGGAAG
CCTGCTACTGCAGCGCGCTGCTACCAGTTGGGTTTTGGGTCAGCGCTTCA
AGGACATCCTAATCCAACGCACACAACCATATAACAAGCCCTATGTGGAA
GCGGCGGGGACACGGCTTCCTGGGTGGAACTACAATGTGTCGCATCACGG
GGATTGGGTAGTGCTGGCCAGCGAGCCTTCGGGTACAGTAGGGACAGATG
TGGTGTGCTTGCAGGATCGGCCTTTCCAGGCCATGACAGCATCGGAGTAT
ATCGACCTTTTCCGCCGTCATTTGACGCCGGCAGAGCGCGATGGATTGGA
GGGATTGGCACCGAAAGGGGAGACTGCTCAGTATCGTGCGTTCTTCCGGG
TGTGGGCGATGAAGGAGGCTTATATCAAGGCATTGGGAGTGGGATTGTCG
TTTCCCATTCGACGATTGGAATGCAGTATCCTGGACGTTGGGAAGGATTA
TTTGAAGAGGGTAGAAGATGAAGGGGAAGAGGAGGAGTTGATGATGGATG
GGTATGGCATGGCCGATTGGAAGCTTCGGTTTTTGGCTTTGCCGCCGGAT
GGATGTTATTTGTGGTGTACCGCCGTGGGACCTGCGCCCTCTCCTCATTT
CCAGGATGTAGGAGGTATCGGAGGGACAGCAGCGGTAGGTATAAGCACGG
TCGATGGTGATTGTAACCCATGCAATGGCTACTTCTCTACCGTCCCCTTC
TCGGCAGCGGCAAGTCAAGATGCTGCGCTGTTAACGGCAACGGCAGCGGC
AGCAGCCACCAAGGCGCCGGCATCGGGCCATACACAACAGAGGTTGCGGA
GGCAGTATCACGTACTTAGCATTCGAGATATTTTACCTTGGTCGGTTCAA
GCTGAGTGGGATGCCTCAGGAGGAGGAAGTGGTAGCACGGAAGCAGCAGC
AGCAGCAGCAGTATCCGTGTCAACTCAAGATTGA
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Synonyms
Publications