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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:214657..217906 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G00540.1 vs.
Match: EWM27716.1 (SMAD/FHA domain protein [Nannochloropsis gaditana]) HSP 1 Score: 470.7 bits (1210), Expect = 4.600e-129 Identity = 275/416 (66.11%), Postives = 309/416 (74.28%), Query Frame = 0
Query: 1 MVLRCLGPAESDWMNRSQVVTKEGISGGRRRNATGGKDSMVFQDTTVSRRHFEAGYGPIDETGHAGFYIQDLGSAGGTYLRLRPREAMGLRDGAMILVGKHQFIVLAPSRFLELEQQQQPQPPTASTAPFAVPPMSSSSTPPPPPSRNMDLVDQS--DHALLGVSPTSGGGGATPAVEVTDESSGASTGAGGGVSE-RGAYGGK-TMGASIQGYLQRPKAPLVSADEGPPRPLLMLKCFAPEGSPMQHRVFAVGTEGATVGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRLEYHPDKGAFVLLDGGLGGDKPSTNGTWARLSYMQMASPRQILEREDEILVGGILRFAVSFESFLMEGVVPPRGEEGQEGRGEESGGGGGEGGI---SDGETLTPRSKQEKE----VEEESMDVS 406
MVLRCLGPAESDW++RSQVVTKEGI GGRRR TGGKDSMVFQDTTVSRRHFEAG+GP+DET FYIQDLGSAGGTYLRLRPRE M LRDGAMILVGKHQFIV++PSR EL Q P T +A A +S+T P P S D + + + P S GA A+ D + S GGG S RG G +G IQ YLQ+P+APLVSA EG +PLLML+CFAPEGSPMQHRVFAVG EGA++GRKQSNTVSLSQEKGGEVLGLDSAVSGEHCR+EYH +KG FVL+DGGLGGDKPSTNGTW RLSY+ M S RQ +ER+DEILVGGILRF+VSFE+FLME VVPPR EEG + ++GG GEG + SDGE TPRSKQ+KE EE MD S
Sbjct: 108 MVLRCLGPAESDWIHRSQVVTKEGILGGRRRILTGGKDSMVFQDTTVSRRHFEAGWGPVDETSLPSFYIQDLGSAGGTYLRLRPREIMELRDGAMILVGKHQFIVISPSRLHEL-QLPAPACRTGQSA-VAFEAFHNSATIPTPLSPGAPGTDDNTENQGFPNMPPASAAAGAV-ALGTEDPNDSISGAGGGGESGLRGRQGQDFPLGRLIQRYLQQPEAPLVSAGEGSEQPLLMLQCFAPEGSPMQHRVFAVGVEGASIGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRIEYHHEKGGFVLVDGGLGGDKPSTNGTWTRLSYIHMTSARQKVERDDEILVGGILRFSVSFETFLMESVVPPR-EEG--AKACDTGGRDGEGAVGMMSDGEGSTPRSKQDKENGPIGREEPMDTS 517
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G00540.1 ID=NO09G00540.1|Name=NO09G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=3089bp GTCCGCGACCATTTACATCGCTATGCTCCACCCTAATGTTGTCCAAAGCG CCGATAGCAAAGGCTCAAGGGCAAATATACAGGCCTTTCAACAGTCAACC TTGTGTTTTGGGGTAAGCGGGAGTGAAATGAAAGACGTCGGCGTCTCGAA GCCGAGGCCTTGGTTCACGACGCCACTAACTTCCTTTGCCAATTTCCCTC ACAACCTGCCTTGTTTGCACACTATGCACCCCCGCCCCCCAACCACCCAC ATAAAGCGGCACCACAACGTATGGATTCTTCCATGGGCAGCGGCAGCCGG CGGTGTAATCGCGTCATGCAATCGGCGCCGACATCCGCCTCAATACTTAT CACGCCAGCGTCCTTCCGTTCACGATGGCCTGCACCTTTTAACACACGCC CACCTCGACCCCAACTCCATCCACAGGCCACATCGCGCATCTTCCTGCTA TCTGAGGGCCGGAAACACGCTGCTGGACGTGGACACTGCAGCAGAAAGGC GGCAGTACGCAGGCAAATGACGCCCAGACCTGTGATTGTGCGGGGGCGCA TAAGAGATGAGTTTCAATGTCCCATTACAGCACAAATTCTCAGGTAAGGC CACCAAGGCTGGGCCAAAATGGCAATCGATATGTATGGAGATAGAGCGTT GAGATTGTGTGGGTGGGGTGATCGCCATGCCCTCGAGTTTCGTCCCCTGG TCGTAAATCCCCTTCGCCTTTCTCCCCTTATGTCCCTCCTCTCTTGCCAC TATCTTCATGCCGCTTACCCCTTCAAACAGAGACCCCGTCGTAGCGAAGG ATGGACACACATATGAACGCTCCGCCATCAGCCTCTGGCTTGAAACCCAC AAGACATCTCCCATGGTAAACACTTTCCTTACCATCCTCTCCTCCCCCTC TGCCTCGCCTCTCTCCAGGAAGAGCATAAGAATATACCTCTCCTTTCTCT GCTCCCCCCCTTACAGACCAAAGAGGAAATCAGCTCCGCAGATCTAGTCG CGAACCTGAACCTCAAGCGACTCATCTACGATCTAGTCGCAGAGGGCGGA CATGGGCTGGCAGCCAAGCCCACCAATGCCGAAGAAGCATCCCAAGAGAC GGCATTTGGGTTCGACGACGTGATGGTCCTCCGTTGTTTAGGGCCGGCCG AATCCGATTGGATGAACCGCAGCCAAGTCGTGACGAAGGAGGGCATTTCT GGGGGACGCAGGAGGAATGCCACCGGAGGAAAGGACTCGATGGTCTTCCA AGACACCACGGTCTCTCGGCGTCACTTCGAGGCCGGTTACGGCCCCATCG ACGAGACAGGCCACGCCGGTTTCTACATCCAGGACCTCGGTTCCGCCGGG GGCACCTACCTCCGCCTCCGCCCTCGGGAAGCAATGGGCCTGAGAGACGG CGCCATGATCCTCGTGGGAAAGCATCAATTTATTGTTCTTGCCCCCTCCC GTTTCCTTGAACTCGAGCAGCAGCAACAGCCGCAACCACCAACAGCTTCT ACCGCGCCTTTTGCCGTCCCTCCTATGAGCAGCTCTTCCACTCCGCCACC ACCTCCTAGCCGGAACATGGATCTCGTCGACCAAAGTGACCATGCACTCC TTGGAGTTTCTCCAACGTCTGGAGGAGGAGGAGCAACACCAGCAGTAGAA GTAACAGATGAATCGAGCGGTGCGAGTACCGGCGCAGGTGGAGGAGTGTC AGAAAGAGGGGCGTATGGAGGCAAGACGATGGGAGCATCGATTCAAGGGT ATTTACAGAGGCCAAAGGCCCCATTGGTGAGCGCGGATGAAGGACCGCCG CGGCCGTTGCTGATGCTCAAATGCTTCGCACCTGAGGGGTCGCCGATGCA GCACCGTGTGTTTGCCGTGGGCACAGAGGGTGCGACGGTGGGACGGAAGC AGAGTAATACTGTGTCCTTATCGCAGGAGAAGGGGGGAGAGGTCCTGGGG CTTGACTCGGCTGTGTCGGGCGAGCATTGTCGGTTGGAGTACCACCCTGA CAAGGGGGCCTTCGTCCTGCTGGATGGGGGACTGGGGGGGGACAAGCCGT CGACAAATGGAACATGGGCCCGGTTGAGCTACATGCAGATGGCCAGTCCA AGACAGATATTGGAGAGAGAGGACGAGATTCTCGTTGGGGGGATATTGAG GTTTGCGGTGTCTTTCGAGAGTTTTTTGATGGAAGGCGTTGTTCCTCCGA GGGGCGAGGAGGGGCAGGAGGGGAGAGGTGAGGAAAGCGGGGGAGGAGGG GGAGAAGGCGGGATATCGGATGGGGAGACTTTGACGCCGAGAAGTAAGCA GGAGAAGGAGGTGGAGGAGGAGTCGATGGACGTTTCATGATAATAGTTTT TGGGATGTGAGGAGGAAGGGAGGGAGGAATGAGAAGGGGGGATGGAGAGG GGAAGGAATGGAGGGAGGAAGGGATTTGACCGATAGAAATATCAGCTGGT GGTTAAAGGAGAGCCATCAAATTGTGTACACATTCATAAGACCCTTTCAT TGTGAGTCGCAGTAGCAGCTGCAACAACAGCAGCAGCAACTGCAGCAAAG AAGGGTAGAGAAATAGAGAGAACGGGAAGGAGGCAGAGAATGTAGATGAG AAAGCATAGGTCGAGGAAAAAGCATTGCCTTCTTTCTTTCCCAACTGTGT GCGTTCTCTCTTTCCTTACTCCCGCGTGCTGGCAAGCACGCAGACAGGCA GCGATAGAGAGTAAGAATAAGAAAAGGTGCTTGTAAGAAAGAAAATGGAT AAAGTAGACAGGACCAAAAAACTCCTCTATGGACTTACAACGCGCTCGTT TCTTTCAGTCCAGTCAGCAATCGCCAATATATTTCCTAGCCTTGCTTTTG GCTCCATTTCATCTATTTTCTTCGAGTGACAGGTATCCACCAACGCCTCC TCCGCAAGCAAAACACACTTATCGAAAACCACACGCAGAGCGACTGACTC CTTAGATTTTGGGCCCCCCTTTTCCATACCCAGGTATCTCAACCTTACGC TCAAGAGAAAGTAATGGCGAGGGTAAGAATAAGTGAAAGCTAATTGATGC ATGTGAGCGACTCGATCTCTCTTCGCGCGCATATATTGT back to topprotein sequence of NO09G00540.1 >NO09G00540.1-protein ID=NO09G00540.1-protein|Name=NO09G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=406bp MVLRCLGPAESDWMNRSQVVTKEGISGGRRRNATGGKDSMVFQDTTVSRR HFEAGYGPIDETGHAGFYIQDLGSAGGTYLRLRPREAMGLRDGAMILVGK HQFIVLAPSRFLELEQQQQPQPPTASTAPFAVPPMSSSSTPPPPPSRNMD LVDQSDHALLGVSPTSGGGGATPAVEVTDESSGASTGAGGGVSERGAYGG KTMGASIQGYLQRPKAPLVSADEGPPRPLLMLKCFAPEGSPMQHRVFAVG TEGATVGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRLEYHPDKGAFVLL DGGLGGDKPSTNGTWARLSYMQMASPRQILEREDEILVGGILRFAVSFES FLMEGVVPPRGEEGQEGRGEESGGGGGEGGISDGETLTPRSKQEKEVEEE SMDVS* back to topmRNA from alignment at chr9:214657..217906+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G00540.1 ID=NO09G00540.1|Name=NO09G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=3250bp|location=Sequence derived from alignment at chr9:214657..217906+ (Nannochloropsis oceanica) GTCCGCGACCATTTACATCGCTATGCTCCACCCTAATGTTGTCCAAAGCG
CCGATAGCAAAGGCTCAAGGGCAAATATACAGGCCTTTCAACAGTCAACC
TTGTGTTTTGGGGTAAGCGGGAGTGAAATGAAAGACGTCGGCGTCTCGAA
GCCGAGGCCTTGGTTCACGACGCCACTAACTTCCTTTGCCAATTTCCCTC
ACAACCTGCCTTGTTTGCACACTATGCACCCCCGCCCCCCAACCACCCAC
ATAAAGCGGCACCACAACGTATGGATTCTTCCATGGGCAGCGGCAGCCGG
CGGTGTAATCGCGTCATGCAATCGGCGCCGACATCCGCCTCAATACTTAT
CACGCCAGCGTCCTTCCGTTCACGATGGCCTGCACCTTTTAACACACGCC
CACCTCGACCCCAACTCCATCCACAGGCCACATCGCGCATCTTCCTGCTA
TCTGAGGGCCGGAAACACGCTGCTGGACGTGGACACTGCAGCAGAAAGGC
GGCAGTACGCAGGCAAATGACGCCCAGACCTGTGATTGTGCGGGGGCGCA
TAAGAGATGAGTTTCAATGTCCCATTACAGCACAAATTCTCAGGTAAGGC
CACCAAGGCTGGGCCAAAATGGCAATCGATATGTATGGAGATAGAGCGTT
GAGATTGTGTGGGTGGGGTGATCGCCATGCCCTCGAGTTTCGTCCCCTGG
TCGTAAATCCCCTTCGCCTTTCTCCCCTTATGTCCCTCCTCTCTTGCCAC
TATCTTCATGCCGCTTACCCCTTCAAACAGAGACCCCGTCGTAGCGAAGG
ATGGACACACATATGAACGCTCCGCCATCAGCCTCTGGCTTGAAACCCAC
AAGACATCTCCCATGGTAAACACTTTCCTTACCATCCTCTCCTCCCCCTC
TGCCTCGCCTCTCTCCAGGAAGAGCATAAGAATATACCTCTCCTTTCTCT
GCTCCCCCCCTTACAGACCAAAGAGGAAATCAGCTCCGCAGATCTAGTCG
CGAACCTGAACCTCAAGCGACTCATCTACGATCTAGTCGCAGAGGGCGGA
CATGGGCTGGCAGCCAAGCCCACCAATGCCGAAGAAGCATCCCAAGAGAC
GGCATTTGGGTTCGACGACGTGATGGTCCTCCGTTGTTTAGGGCCGGCCG
AATCCGATTGGATGAACCGCAGCCAAGTCGTGACGAAGGAGGGCATTTCT
GGGGGACGCAGGAGGAATGCCACCGGAGGAAAGGACTCGATGGTCTTCCA
AGTGCGTTAAATTTCCATTTTTTGTCTTGCCCATCTTTCACTGCCCCCTC
CCTCCACACCTTCACCTCCCTTTTCTTTCTCAGGTCAAAGCATACGCACA
CTCCCCTCTGTCCTCCCCCTTCTCACATTTCTCCTCCCCCTTTCCTCCTC
CCCCCTTGTCAGGACACCACGGTCTCTCGGCGTCACTTCGAGGCCGGTTA
CGGCCCCATCGACGAGACAGGCCACGCCGGTTTCTACATCCAGGACCTCG
GTTCCGCCGGGGGCACCTACCTCCGCCTCCGCCCTCGGGAAGCAATGGGC
CTGAGAGACGGCGCCATGATCCTCGTGGGAAAGCATCAATTTATTGTTCT
TGCCCCCTCCCGTTTCCTTGAACTCGAGCAGCAGCAACAGCCGCAACCAC
CAACAGCTTCTACCGCGCCTTTTGCCGTCCCTCCTATGAGCAGCTCTTCC
ACTCCGCCACCACCTCCTAGCCGGAACATGGATCTCGTCGACCAAAGTGA
CCATGCACTCCTTGGAGTTTCTCCAACGTCTGGAGGAGGAGGAGCAACAC
CAGCAGTAGAAGTAACAGATGAATCGAGCGGTGCGAGTACCGGCGCAGGT
GGAGGAGTGTCAGAAAGAGGGGCGTATGGAGGCAAGACGATGGGAGCATC
GATTCAAGGGTATTTACAGAGGCCAAAGGCCCCATTGGTGAGCGCGGATG
AAGGACCGCCGCGGCCGTTGCTGATGCTCAAATGCTTCGCACCTGAGGGG
TCGCCGATGCAGCACCGTGTGTTTGCCGTGGGCACAGAGGGTGCGACGGT
GGGACGGAAGCAGAGTAATACTGTGTCCTTATCGCAGGAGAAGGGGGGAG
AGGTCCTGGGGCTTGACTCGGCTGTGTCGGGCGAGCATTGTCGGTTGGAG
TACCACCCTGACAAGGGGGCCTTCGTCCTGCTGGATGGGGGACTGGGGGG
GGACAAGCCGTCGACAAATGGAACATGGGCCCGGTTGAGCTACATGCAGA
TGGCCAGTCCAAGACAGATATTGGAGAGAGAGGACGAGATTCTCGTTGGG
GGGATATTGAGGTTTGCGGTGTCTTTCGAGAGTTTTTTGATGGAAGGCGT
TGTTCCTCCGAGGGGCGAGGAGGGGCAGGAGGGGAGAGGTGAGGAAAGCG
GGGGAGGAGGGGGAGAAGGCGGGATATCGGATGGGGAGACTTTGACGCCG
AGAAGTAAGCAGGAGAAGGAGGTGGAGGAGGAGTCGATGGACGTTTCATG
ATAATAGTTTTTGGGATGTGAGGAGGAAGGGAGGGAGGAATGAGAAGGGG
GGATGGAGAGGGGAAGGAATGGAGGGAGGAAGGGATTTGACCGATAGAAA
TATCAGCTGGTGGTTAAAGGAGAGCCATCAAATTGTGTACACATTCATAA
GACCCTTTCATTGTGAGTCGCAGTAGCAGCTGCAACAACAGCAGCAGCAA
CTGCAGCAAAGAAGGGTAGAGAAATAGAGAGAACGGGAAGGAGGCAGAGA
ATGTAGATGAGAAAGCATAGGTCGAGGAAAAAGCATTGCCTTCTTTCTTT
CCCAACTGTGTGCGTTCTCTCTTTCCTTACTCCCGCGTGCTGGCAAGCAC
GCAGACAGGCAGCGATAGAGAGTAAGAATAAGAAAAGGTGCTTGTAAGAA
AGAAAATGGATAAAGTAGACAGGACCAAAAAACTCCTCTATGGACTTACA
ACGCGCTCGTTTCTTTCAGTCCAGTCAGCAATCGCCAATATATTTCCTAG
CCTTGCTTTTGGCTCCATTTCATCTATTTTCTTCGAGTGACAGGTATCCA
CCAACGCCTCCTCCGCAAGCAAAACACACTTATCGAAAACCACACGCAGA
GCGACTGACTCCTTAGATTTTGGGCCCCCCTTTTCCATACCCAGGTATCT
CAACCTTACGCTCAAGAGAAAGTAATGGCGAGGGTAAGAATAAGTGAAAG
CTAATTGATGCATGTGAGCGACTCGATCTCTCTTCGCGCGCATATATTGT
back to topCoding sequence (CDS) from alignment at chr9:214657..217906+ >NO09G00540.1 ID=NO09G00540.1|Name=NO09G00540.1|organism=Nannochloropsis oceanica|type=CDS|length=1218bp|location=Sequence derived from alignment at chr9:214657..217906+ (Nannochloropsis oceanica) ATGGTCCTCCGTTGTTTAGGGCCGGCCGAATCCGATTGGATGAACCGCAG CCAAGTCGTGACGAAGGAGGGCATTTCTGGGGGACGCAGGAGGAATGCCA CCGGAGGAAAGGACTCGATGGTCTTCCAAGACACCACGGTCTCTCGGCGT CACTTCGAGGCCGGTTACGGCCCCATCGACGAGACAGGCCACGCCGGTTT CTACATCCAGGACCTCGGTTCCGCCGGGGGCACCTACCTCCGCCTCCGCC CTCGGGAAGCAATGGGCCTGAGAGACGGCGCCATGATCCTCGTGGGAAAG CATCAATTTATTGTTCTTGCCCCCTCCCGTTTCCTTGAACTCGAGCAGCA GCAACAGCCGCAACCACCAACAGCTTCTACCGCGCCTTTTGCCGTCCCTC CTATGAGCAGCTCTTCCACTCCGCCACCACCTCCTAGCCGGAACATGGAT CTCGTCGACCAAAGTGACCATGCACTCCTTGGAGTTTCTCCAACGTCTGG AGGAGGAGGAGCAACACCAGCAGTAGAAGTAACAGATGAATCGAGCGGTG CGAGTACCGGCGCAGGTGGAGGAGTGTCAGAAAGAGGGGCGTATGGAGGC AAGACGATGGGAGCATCGATTCAAGGGTATTTACAGAGGCCAAAGGCCCC ATTGGTGAGCGCGGATGAAGGACCGCCGCGGCCGTTGCTGATGCTCAAAT GCTTCGCACCTGAGGGGTCGCCGATGCAGCACCGTGTGTTTGCCGTGGGC ACAGAGGGTGCGACGGTGGGACGGAAGCAGAGTAATACTGTGTCCTTATC GCAGGAGAAGGGGGGAGAGGTCCTGGGGCTTGACTCGGCTGTGTCGGGCG AGCATTGTCGGTTGGAGTACCACCCTGACAAGGGGGCCTTCGTCCTGCTG GATGGGGGACTGGGGGGGGACAAGCCGTCGACAAATGGAACATGGGCCCG GTTGAGCTACATGCAGATGGCCAGTCCAAGACAGATATTGGAGAGAGAGG ACGAGATTCTCGTTGGGGGGATATTGAGGTTTGCGGTGTCTTTCGAGAGT TTTTTGATGGAAGGCGTTGTTCCTCCGAGGGGCGAGGAGGGGCAGGAGGG GAGAGGTGAGGAAAGCGGGGGAGGAGGGGGAGAAGGCGGGATATCGGATG GGGAGACTTTGACGCCGAGAAGTAAGCAGGAGAAGGAGGTGGAGGAGGAG TCGATGGACGTTTCATGA back to top
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