NO09G00540.1, NO09G00540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00540.1
Unique NameNO09G00540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3089
Alignment locationchr9:214657..217906 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:214657..217906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G00540.1 vs.
Match: EWM27716.1 (SMAD/FHA domain protein [Nannochloropsis gaditana])

HSP 1 Score: 470.7 bits (1210), Expect = 4.600e-129
Identity = 275/416 (66.11%), Postives = 309/416 (74.28%), Query Frame = 0
Query:    1 MVLRCLGPAESDWMNRSQVVTKEGISGGRRRNATGGKDSMVFQDTTVSRRHFEAGYGPIDETGHAGFYIQDLGSAGGTYLRLRPREAMGLRDGAMILVGKHQFIVLAPSRFLELEQQQQPQPPTASTAPFAVPPMSSSSTPPPPPSRNMDLVDQS--DHALLGVSPTSGGGGATPAVEVTDESSGASTGAGGGVSE-RGAYGGK-TMGASIQGYLQRPKAPLVSADEGPPRPLLMLKCFAPEGSPMQHRVFAVGTEGATVGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRLEYHPDKGAFVLLDGGLGGDKPSTNGTWARLSYMQMASPRQILEREDEILVGGILRFAVSFESFLMEGVVPPRGEEGQEGRGEESGGGGGEGGI---SDGETLTPRSKQEKE----VEEESMDVS 406
            MVLRCLGPAESDW++RSQVVTKEGI GGRRR  TGGKDSMVFQDTTVSRRHFEAG+GP+DET    FYIQDLGSAGGTYLRLRPRE M LRDGAMILVGKHQFIV++PSR  EL Q   P   T  +A  A     +S+T P P S      D +  +     + P S   GA  A+   D +   S   GGG S  RG  G    +G  IQ YLQ+P+APLVSA EG  +PLLML+CFAPEGSPMQHRVFAVG EGA++GRKQSNTVSLSQEKGGEVLGLDSAVSGEHCR+EYH +KG FVL+DGGLGGDKPSTNGTW RLSY+ M S RQ +ER+DEILVGGILRF+VSFE+FLME VVPPR EEG   +  ++GG  GEG +   SDGE  TPRSKQ+KE      EE MD S
Sbjct:  108 MVLRCLGPAESDWIHRSQVVTKEGILGGRRRILTGGKDSMVFQDTTVSRRHFEAGWGPVDETSLPSFYIQDLGSAGGTYLRLRPREIMELRDGAMILVGKHQFIVISPSRLHEL-QLPAPACRTGQSA-VAFEAFHNSATIPTPLSPGAPGTDDNTENQGFPNMPPASAAAGAV-ALGTEDPNDSISGAGGGGESGLRGRQGQDFPLGRLIQRYLQQPEAPLVSAGEGSEQPLLMLQCFAPEGSPMQHRVFAVGVEGASIGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRIEYHHEKGGFVLVDGGLGGDKPSTNGTWTRLSYIHMTSARQKVERDDEILVGGILRFSVSFETFLMESVVPPR-EEG--AKACDTGGRDGEGAVGMMSDGEGSTPRSKQDKENGPIGREEPMDTS 517          
The following BLAST results are available for this feature:
BLAST of NO09G00540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27716.14.600e-12966.11SMAD/FHA domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00540NO09G00540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00540.1NO09G00540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00540.1.cds1NO09G00540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00540.1.cds2NO09G00540.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00540.1 ID=NO09G00540.1|Name=NO09G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=3089bp
GTCCGCGACCATTTACATCGCTATGCTCCACCCTAATGTTGTCCAAAGCG
CCGATAGCAAAGGCTCAAGGGCAAATATACAGGCCTTTCAACAGTCAACC
TTGTGTTTTGGGGTAAGCGGGAGTGAAATGAAAGACGTCGGCGTCTCGAA
GCCGAGGCCTTGGTTCACGACGCCACTAACTTCCTTTGCCAATTTCCCTC
ACAACCTGCCTTGTTTGCACACTATGCACCCCCGCCCCCCAACCACCCAC
ATAAAGCGGCACCACAACGTATGGATTCTTCCATGGGCAGCGGCAGCCGG
CGGTGTAATCGCGTCATGCAATCGGCGCCGACATCCGCCTCAATACTTAT
CACGCCAGCGTCCTTCCGTTCACGATGGCCTGCACCTTTTAACACACGCC
CACCTCGACCCCAACTCCATCCACAGGCCACATCGCGCATCTTCCTGCTA
TCTGAGGGCCGGAAACACGCTGCTGGACGTGGACACTGCAGCAGAAAGGC
GGCAGTACGCAGGCAAATGACGCCCAGACCTGTGATTGTGCGGGGGCGCA
TAAGAGATGAGTTTCAATGTCCCATTACAGCACAAATTCTCAGGTAAGGC
CACCAAGGCTGGGCCAAAATGGCAATCGATATGTATGGAGATAGAGCGTT
GAGATTGTGTGGGTGGGGTGATCGCCATGCCCTCGAGTTTCGTCCCCTGG
TCGTAAATCCCCTTCGCCTTTCTCCCCTTATGTCCCTCCTCTCTTGCCAC
TATCTTCATGCCGCTTACCCCTTCAAACAGAGACCCCGTCGTAGCGAAGG
ATGGACACACATATGAACGCTCCGCCATCAGCCTCTGGCTTGAAACCCAC
AAGACATCTCCCATGGTAAACACTTTCCTTACCATCCTCTCCTCCCCCTC
TGCCTCGCCTCTCTCCAGGAAGAGCATAAGAATATACCTCTCCTTTCTCT
GCTCCCCCCCTTACAGACCAAAGAGGAAATCAGCTCCGCAGATCTAGTCG
CGAACCTGAACCTCAAGCGACTCATCTACGATCTAGTCGCAGAGGGCGGA
CATGGGCTGGCAGCCAAGCCCACCAATGCCGAAGAAGCATCCCAAGAGAC
GGCATTTGGGTTCGACGACGTGATGGTCCTCCGTTGTTTAGGGCCGGCCG
AATCCGATTGGATGAACCGCAGCCAAGTCGTGACGAAGGAGGGCATTTCT
GGGGGACGCAGGAGGAATGCCACCGGAGGAAAGGACTCGATGGTCTTCCA
AGACACCACGGTCTCTCGGCGTCACTTCGAGGCCGGTTACGGCCCCATCG
ACGAGACAGGCCACGCCGGTTTCTACATCCAGGACCTCGGTTCCGCCGGG
GGCACCTACCTCCGCCTCCGCCCTCGGGAAGCAATGGGCCTGAGAGACGG
CGCCATGATCCTCGTGGGAAAGCATCAATTTATTGTTCTTGCCCCCTCCC
GTTTCCTTGAACTCGAGCAGCAGCAACAGCCGCAACCACCAACAGCTTCT
ACCGCGCCTTTTGCCGTCCCTCCTATGAGCAGCTCTTCCACTCCGCCACC
ACCTCCTAGCCGGAACATGGATCTCGTCGACCAAAGTGACCATGCACTCC
TTGGAGTTTCTCCAACGTCTGGAGGAGGAGGAGCAACACCAGCAGTAGAA
GTAACAGATGAATCGAGCGGTGCGAGTACCGGCGCAGGTGGAGGAGTGTC
AGAAAGAGGGGCGTATGGAGGCAAGACGATGGGAGCATCGATTCAAGGGT
ATTTACAGAGGCCAAAGGCCCCATTGGTGAGCGCGGATGAAGGACCGCCG
CGGCCGTTGCTGATGCTCAAATGCTTCGCACCTGAGGGGTCGCCGATGCA
GCACCGTGTGTTTGCCGTGGGCACAGAGGGTGCGACGGTGGGACGGAAGC
AGAGTAATACTGTGTCCTTATCGCAGGAGAAGGGGGGAGAGGTCCTGGGG
CTTGACTCGGCTGTGTCGGGCGAGCATTGTCGGTTGGAGTACCACCCTGA
CAAGGGGGCCTTCGTCCTGCTGGATGGGGGACTGGGGGGGGACAAGCCGT
CGACAAATGGAACATGGGCCCGGTTGAGCTACATGCAGATGGCCAGTCCA
AGACAGATATTGGAGAGAGAGGACGAGATTCTCGTTGGGGGGATATTGAG
GTTTGCGGTGTCTTTCGAGAGTTTTTTGATGGAAGGCGTTGTTCCTCCGA
GGGGCGAGGAGGGGCAGGAGGGGAGAGGTGAGGAAAGCGGGGGAGGAGGG
GGAGAAGGCGGGATATCGGATGGGGAGACTTTGACGCCGAGAAGTAAGCA
GGAGAAGGAGGTGGAGGAGGAGTCGATGGACGTTTCATGATAATAGTTTT
TGGGATGTGAGGAGGAAGGGAGGGAGGAATGAGAAGGGGGGATGGAGAGG
GGAAGGAATGGAGGGAGGAAGGGATTTGACCGATAGAAATATCAGCTGGT
GGTTAAAGGAGAGCCATCAAATTGTGTACACATTCATAAGACCCTTTCAT
TGTGAGTCGCAGTAGCAGCTGCAACAACAGCAGCAGCAACTGCAGCAAAG
AAGGGTAGAGAAATAGAGAGAACGGGAAGGAGGCAGAGAATGTAGATGAG
AAAGCATAGGTCGAGGAAAAAGCATTGCCTTCTTTCTTTCCCAACTGTGT
GCGTTCTCTCTTTCCTTACTCCCGCGTGCTGGCAAGCACGCAGACAGGCA
GCGATAGAGAGTAAGAATAAGAAAAGGTGCTTGTAAGAAAGAAAATGGAT
AAAGTAGACAGGACCAAAAAACTCCTCTATGGACTTACAACGCGCTCGTT
TCTTTCAGTCCAGTCAGCAATCGCCAATATATTTCCTAGCCTTGCTTTTG
GCTCCATTTCATCTATTTTCTTCGAGTGACAGGTATCCACCAACGCCTCC
TCCGCAAGCAAAACACACTTATCGAAAACCACACGCAGAGCGACTGACTC
CTTAGATTTTGGGCCCCCCTTTTCCATACCCAGGTATCTCAACCTTACGC
TCAAGAGAAAGTAATGGCGAGGGTAAGAATAAGTGAAAGCTAATTGATGC
ATGTGAGCGACTCGATCTCTCTTCGCGCGCATATATTGT
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protein sequence of NO09G00540.1

>NO09G00540.1-protein ID=NO09G00540.1-protein|Name=NO09G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=406bp
MVLRCLGPAESDWMNRSQVVTKEGISGGRRRNATGGKDSMVFQDTTVSRR
HFEAGYGPIDETGHAGFYIQDLGSAGGTYLRLRPREAMGLRDGAMILVGK
HQFIVLAPSRFLELEQQQQPQPPTASTAPFAVPPMSSSSTPPPPPSRNMD
LVDQSDHALLGVSPTSGGGGATPAVEVTDESSGASTGAGGGVSERGAYGG
KTMGASIQGYLQRPKAPLVSADEGPPRPLLMLKCFAPEGSPMQHRVFAVG
TEGATVGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRLEYHPDKGAFVLL
DGGLGGDKPSTNGTWARLSYMQMASPRQILEREDEILVGGILRFAVSFES
FLMEGVVPPRGEEGQEGRGEESGGGGGEGGISDGETLTPRSKQEKEVEEE
SMDVS*
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mRNA from alignment at chr9:214657..217906+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00540.1 ID=NO09G00540.1|Name=NO09G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=3250bp|location=Sequence derived from alignment at chr9:214657..217906+ (Nannochloropsis oceanica)
GTCCGCGACCATTTACATCGCTATGCTCCACCCTAATGTTGTCCAAAGCG CCGATAGCAAAGGCTCAAGGGCAAATATACAGGCCTTTCAACAGTCAACC TTGTGTTTTGGGGTAAGCGGGAGTGAAATGAAAGACGTCGGCGTCTCGAA GCCGAGGCCTTGGTTCACGACGCCACTAACTTCCTTTGCCAATTTCCCTC ACAACCTGCCTTGTTTGCACACTATGCACCCCCGCCCCCCAACCACCCAC ATAAAGCGGCACCACAACGTATGGATTCTTCCATGGGCAGCGGCAGCCGG CGGTGTAATCGCGTCATGCAATCGGCGCCGACATCCGCCTCAATACTTAT CACGCCAGCGTCCTTCCGTTCACGATGGCCTGCACCTTTTAACACACGCC CACCTCGACCCCAACTCCATCCACAGGCCACATCGCGCATCTTCCTGCTA TCTGAGGGCCGGAAACACGCTGCTGGACGTGGACACTGCAGCAGAAAGGC GGCAGTACGCAGGCAAATGACGCCCAGACCTGTGATTGTGCGGGGGCGCA TAAGAGATGAGTTTCAATGTCCCATTACAGCACAAATTCTCAGGTAAGGC CACCAAGGCTGGGCCAAAATGGCAATCGATATGTATGGAGATAGAGCGTT GAGATTGTGTGGGTGGGGTGATCGCCATGCCCTCGAGTTTCGTCCCCTGG TCGTAAATCCCCTTCGCCTTTCTCCCCTTATGTCCCTCCTCTCTTGCCAC TATCTTCATGCCGCTTACCCCTTCAAACAGAGACCCCGTCGTAGCGAAGG ATGGACACACATATGAACGCTCCGCCATCAGCCTCTGGCTTGAAACCCAC AAGACATCTCCCATGGTAAACACTTTCCTTACCATCCTCTCCTCCCCCTC TGCCTCGCCTCTCTCCAGGAAGAGCATAAGAATATACCTCTCCTTTCTCT GCTCCCCCCCTTACAGACCAAAGAGGAAATCAGCTCCGCAGATCTAGTCG CGAACCTGAACCTCAAGCGACTCATCTACGATCTAGTCGCAGAGGGCGGA CATGGGCTGGCAGCCAAGCCCACCAATGCCGAAGAAGCATCCCAAGAGAC GGCATTTGGGTTCGACGACGTGATGGTCCTCCGTTGTTTAGGGCCGGCCG AATCCGATTGGATGAACCGCAGCCAAGTCGTGACGAAGGAGGGCATTTCT GGGGGACGCAGGAGGAATGCCACCGGAGGAAAGGACTCGATGGTCTTCCA AGTGCGTTAAATTTCCATTTTTTGTCTTGCCCATCTTTCACTGCCCCCTC CCTCCACACCTTCACCTCCCTTTTCTTTCTCAGGTCAAAGCATACGCACA CTCCCCTCTGTCCTCCCCCTTCTCACATTTCTCCTCCCCCTTTCCTCCTC CCCCCTTGTCAGGACACCACGGTCTCTCGGCGTCACTTCGAGGCCGGTTA CGGCCCCATCGACGAGACAGGCCACGCCGGTTTCTACATCCAGGACCTCG GTTCCGCCGGGGGCACCTACCTCCGCCTCCGCCCTCGGGAAGCAATGGGC CTGAGAGACGGCGCCATGATCCTCGTGGGAAAGCATCAATTTATTGTTCT TGCCCCCTCCCGTTTCCTTGAACTCGAGCAGCAGCAACAGCCGCAACCAC CAACAGCTTCTACCGCGCCTTTTGCCGTCCCTCCTATGAGCAGCTCTTCC ACTCCGCCACCACCTCCTAGCCGGAACATGGATCTCGTCGACCAAAGTGA CCATGCACTCCTTGGAGTTTCTCCAACGTCTGGAGGAGGAGGAGCAACAC CAGCAGTAGAAGTAACAGATGAATCGAGCGGTGCGAGTACCGGCGCAGGT GGAGGAGTGTCAGAAAGAGGGGCGTATGGAGGCAAGACGATGGGAGCATC GATTCAAGGGTATTTACAGAGGCCAAAGGCCCCATTGGTGAGCGCGGATG AAGGACCGCCGCGGCCGTTGCTGATGCTCAAATGCTTCGCACCTGAGGGG TCGCCGATGCAGCACCGTGTGTTTGCCGTGGGCACAGAGGGTGCGACGGT GGGACGGAAGCAGAGTAATACTGTGTCCTTATCGCAGGAGAAGGGGGGAG AGGTCCTGGGGCTTGACTCGGCTGTGTCGGGCGAGCATTGTCGGTTGGAG TACCACCCTGACAAGGGGGCCTTCGTCCTGCTGGATGGGGGACTGGGGGG GGACAAGCCGTCGACAAATGGAACATGGGCCCGGTTGAGCTACATGCAGA TGGCCAGTCCAAGACAGATATTGGAGAGAGAGGACGAGATTCTCGTTGGG GGGATATTGAGGTTTGCGGTGTCTTTCGAGAGTTTTTTGATGGAAGGCGT TGTTCCTCCGAGGGGCGAGGAGGGGCAGGAGGGGAGAGGTGAGGAAAGCG GGGGAGGAGGGGGAGAAGGCGGGATATCGGATGGGGAGACTTTGACGCCG AGAAGTAAGCAGGAGAAGGAGGTGGAGGAGGAGTCGATGGACGTTTCATG ATAATAGTTTTTGGGATGTGAGGAGGAAGGGAGGGAGGAATGAGAAGGGG GGATGGAGAGGGGAAGGAATGGAGGGAGGAAGGGATTTGACCGATAGAAA TATCAGCTGGTGGTTAAAGGAGAGCCATCAAATTGTGTACACATTCATAA GACCCTTTCATTGTGAGTCGCAGTAGCAGCTGCAACAACAGCAGCAGCAA CTGCAGCAAAGAAGGGTAGAGAAATAGAGAGAACGGGAAGGAGGCAGAGA ATGTAGATGAGAAAGCATAGGTCGAGGAAAAAGCATTGCCTTCTTTCTTT CCCAACTGTGTGCGTTCTCTCTTTCCTTACTCCCGCGTGCTGGCAAGCAC GCAGACAGGCAGCGATAGAGAGTAAGAATAAGAAAAGGTGCTTGTAAGAA AGAAAATGGATAAAGTAGACAGGACCAAAAAACTCCTCTATGGACTTACA ACGCGCTCGTTTCTTTCAGTCCAGTCAGCAATCGCCAATATATTTCCTAG CCTTGCTTTTGGCTCCATTTCATCTATTTTCTTCGAGTGACAGGTATCCA CCAACGCCTCCTCCGCAAGCAAAACACACTTATCGAAAACCACACGCAGA GCGACTGACTCCTTAGATTTTGGGCCCCCCTTTTCCATACCCAGGTATCT CAACCTTACGCTCAAGAGAAAGTAATGGCGAGGGTAAGAATAAGTGAAAG CTAATTGATGCATGTGAGCGACTCGATCTCTCTTCGCGCGCATATATTGT
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Coding sequence (CDS) from alignment at chr9:214657..217906+

>NO09G00540.1 ID=NO09G00540.1|Name=NO09G00540.1|organism=Nannochloropsis oceanica|type=CDS|length=1218bp|location=Sequence derived from alignment at chr9:214657..217906+ (Nannochloropsis oceanica)
ATGGTCCTCCGTTGTTTAGGGCCGGCCGAATCCGATTGGATGAACCGCAG
CCAAGTCGTGACGAAGGAGGGCATTTCTGGGGGACGCAGGAGGAATGCCA
CCGGAGGAAAGGACTCGATGGTCTTCCAAGACACCACGGTCTCTCGGCGT
CACTTCGAGGCCGGTTACGGCCCCATCGACGAGACAGGCCACGCCGGTTT
CTACATCCAGGACCTCGGTTCCGCCGGGGGCACCTACCTCCGCCTCCGCC
CTCGGGAAGCAATGGGCCTGAGAGACGGCGCCATGATCCTCGTGGGAAAG
CATCAATTTATTGTTCTTGCCCCCTCCCGTTTCCTTGAACTCGAGCAGCA
GCAACAGCCGCAACCACCAACAGCTTCTACCGCGCCTTTTGCCGTCCCTC
CTATGAGCAGCTCTTCCACTCCGCCACCACCTCCTAGCCGGAACATGGAT
CTCGTCGACCAAAGTGACCATGCACTCCTTGGAGTTTCTCCAACGTCTGG
AGGAGGAGGAGCAACACCAGCAGTAGAAGTAACAGATGAATCGAGCGGTG
CGAGTACCGGCGCAGGTGGAGGAGTGTCAGAAAGAGGGGCGTATGGAGGC
AAGACGATGGGAGCATCGATTCAAGGGTATTTACAGAGGCCAAAGGCCCC
ATTGGTGAGCGCGGATGAAGGACCGCCGCGGCCGTTGCTGATGCTCAAAT
GCTTCGCACCTGAGGGGTCGCCGATGCAGCACCGTGTGTTTGCCGTGGGC
ACAGAGGGTGCGACGGTGGGACGGAAGCAGAGTAATACTGTGTCCTTATC
GCAGGAGAAGGGGGGAGAGGTCCTGGGGCTTGACTCGGCTGTGTCGGGCG
AGCATTGTCGGTTGGAGTACCACCCTGACAAGGGGGCCTTCGTCCTGCTG
GATGGGGGACTGGGGGGGGACAAGCCGTCGACAAATGGAACATGGGCCCG
GTTGAGCTACATGCAGATGGCCAGTCCAAGACAGATATTGGAGAGAGAGG
ACGAGATTCTCGTTGGGGGGATATTGAGGTTTGCGGTGTCTTTCGAGAGT
TTTTTGATGGAAGGCGTTGTTCCTCCGAGGGGCGAGGAGGGGCAGGAGGG
GAGAGGTGAGGAAAGCGGGGGAGGAGGGGGAGAAGGCGGGATATCGGATG
GGGAGACTTTGACGCCGAGAAGTAAGCAGGAGAAGGAGGTGGAGGAGGAG
TCGATGGACGTTTCATGA
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Synonyms
Publications