NO09G00530.1, NO09G00530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00530.1
Unique NameNO09G00530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2052
Alignment locationchr9:212245..214592 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:212245..214592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G00530.1 vs.
Match: EWM27746.1 (Protein of unknown function DUF3411 [Nannochloropsis gaditana])

HSP 1 Score: 434.1 bits (1115), Expect = 5.300e-118
Identity = 265/457 (57.99%), Postives = 321/457 (70.24%), Query Frame = 0
Query:    3 RLLALALACVCGLGWVQAFTPLSPSIVSS--SSLKSGPWGQGRRKPSSS-SLPSVRRERPVGWGGIVVGGGT-----GNGGGGGGGGNGGAGGGSFGWSKEGSGDDGEGDHGVELPRDVTELLARAGRQFTDLPASTQKALVGGSMTSGLLQRYLELEKKGGVVSSLLGMGIFRDRLLMDGYLMDKMVIEMAVGSTCIGGEEGGLGGGFDEGSFNGNVCHSPRLAAAQLLAEWDRRREKLMAELDYAFADTLTCLVANFAAVLISAPSVAGAVPP-SGRNIPANMFQIVPPGARPYALTDRILSPFLKVPTLFAVGMAASLLGFGTTSLLTLIRNHLQS--AKKDPLPSSLPAAVGAGEWDTGRWFGKQTVAVVEEEVAPAEMPLLKTSVAVGVFLAVSTNIRYQVISGLVEERGIAQLLGHNKLADHLASFVARSFNSYIGSANMIDYLKFLGLQQ 449
            RL+AL LAC  GLG V+AF PLS  +  S  SSLK   W  GRRKP S  S+ S R ERP+GW     GGG      G G GG G G  G GGG+ GWSKEG+GDDG+G+  V LP+DV+ELLA+AGR+FT+LP STQKAL+ GSMTS LL+RYLE+E++GG+V+ LLG+ IFRDRLLMD YLMDK+ IEMAVG                              A AQ LAEWDRRREKL  ELD+AFAD LTCLV+NFAAVLI+APS AGA    + RNIPANMFQ+VPPG RPYAL+DR++ PFLK+PTLF VG+AASLLGFGTTS+LTL+R  L S   +  P+   + +A GA E               +E+V   ++P++KTS+AVGVFLAVSTN+RYQ++SG+ EERGIA+ L HNKLADHLASF  R+ N+++GS  MIDYLKFL LQ+
Sbjct:    4 RLIALGLACG-GLGAVRAFAPLSSCLARSPESSLKDEVW-HGRRKPFSLFSIASCRNERPIGWKSPAPGGGLHWRSGGAGNGGVGDGGNGGGGGASGWSKEGNGDDGDGEGSVTLPQDVSELLAKAGRKFTELPTSTQKALMAGSMTSALLKRYLEVERRGGMVAQLLGISIFRDRLLMDVYLMDKIGIEMAVG------------------------------AVAQSLAEWDRRREKLFNELDFAFADLLTCLVSNFAAVLIAAPSAAGAAASNAARNIPANMFQMVPPGTRPYALSDRLVCPFLKMPTLFVVGLAASLLGFGTTSILTLLRKQLHSKPTQSSPIAPLIASATGAAE------------ETAQEDVV-QKIPVIKTSLAVGVFLAVSTNVRYQLVSGVFEERGIARYLAHNKLADHLASFGVRACNTFVGSGQMIDYLKFLKLQE 415          
The following BLAST results are available for this feature:
BLAST of NO09G00530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27746.15.300e-11857.99Protein of unknown function DUF3411 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00530NO09G00530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00530.1NO09G00530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00530.1.cds1NO09G00530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00530.1.cds2NO09G00530.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00530.1.cds3NO09G00530.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00530.1.cds4NO09G00530.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00530.1 ID=NO09G00530.1|Name=NO09G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2052bp
TGTTTGGTATGTGTTTCTGCCTGTGTGGTAGGTGTAGGTCAACAACGTAG
GTGTAGATATTGACGTGAGTACGTCTGCAAGTCAACTTGCTCGCTGTAGA
CTCCTCCTGGGCGCGGGCCATTGCTCGTCCTTTTCATCCCTAAGCTATCC
TTTCTTGTCCGTGCATACATACAACAGGTGGAAAATTAAATAACATCGCA
ATGCACAGGCTGTTGGCCCTGGCATTAGCTTGTGTGTGCGGTCTGGGTTG
GGTCCAGGCCTTCACACCCTTGTCGCCATCGATTGTTTCGTCCTCCTCGC
TCAAGAGTGGACCCTGGGGACAAGGAAGACGGAAGCCCTCCTCGTCGTCA
TTACCTAGTGTTCGACGAGAGCGGCCCGTCGGGTGGGGAGGCATCGTTGT
AGGGGGTGGAACGGGTAACGGCGGTGGTGGCGGCGGCGGGGGTAATGGGG
GAGCAGGCGGGGGATCATTTGGCTGGTCAAAGGAAGGCAGCGGGGACGAC
GGCGAGGGCGACCACGGCGTAGAATTGCCCAGGGATGTGACAGAATTGCT
TGCCAGGGCGGGAAGGCAATTCACGGACTTGCCCGCATCGACACAAAAGG
CGTTGGTGGGTGGATCCATGACCTCGGGCTTGCTTCAGCGGTATCTGGAG
CTGGAGAAGAAGGGTGGAGTCGTTTCCAGCCTATTGGGCATGGGCATCTT
TCGGGACCGGTTGCTGATGGATGGGTACCTCATGGATAAAATGGTGATCG
AGATGGCTGTTGGAAGTACGTGCATTGGAGGGGAGGAGGGAGGGTTAGGT
GGGGGTTTCGACGAGGGTTCTTTTAATGGAAACGTTTGCCATTCCCCGCG
CTTGGCCGCGGCCCAGCTCCTGGCAGAATGGGACCGGCGGCGGGAGAAGC
TCATGGCCGAGCTCGACTATGCCTTCGCAGACACACTTACCTGCCTAGTC
GCCAACTTCGCCGCCGTTCTCATCTCTGCCCCGTCTGTTGCCGGTGCCGT
CCCCCCTTCTGGGAGGAACATCCCGGCGAACATGTTCCAAATAGTACCCC
CCGGGGCTCGGCCTTATGCCTTGACCGACCGAATCCTCAGCCCTTTCCTC
AAGGTTCCCACCCTCTTTGCCGTGGGGATGGCGGCGTCTCTCCTCGGGTT
TGGCACCACCAGTCTGCTTACCTTAATTCGGAACCATCTACAAAGTGCCA
AGAAGGACCCTCTGCCCTCCTCCTTGCCAGCAGCAGTAGGGGCAGGAGAA
TGGGACACCGGCAGGTGGTTCGGGAAGCAGACCGTGGCGGTAGTTGAGGA
AGAGGTAGCACCGGCAGAGATGCCGTTGTTGAAGACGAGTGTTGCGGTGG
GAGTGTTCCTTGCTGTGTCGACCAACATCCGGTACCAGGTCATCTCGGGG
TTGGTTGAGGAGAGGGGTATTGCCCAGCTACTGGGGCACAACAAGCTCGC
AGACCATCTGGCATCGTTTGTGGCGAGGTCTTTTAACAGTTATATTGGCT
CGGCGAACATGATTGACTATTTAAAGTTTCTAGGGTTGCAGCAATGAAGA
GGGAGGAGGGTGGAAGCAGGAGGCGGGCCACGGGGCTGCAGGAGCAGCAG
TAGTTGTCAGCTAGTAGAGAACGAGAAAGCATGTTGCGTCTCTCACAATT
TTGGCGGATGAGGATGACGAGCGAAAGGTATATGACGACGACGGGGACGC
AGGGACTGGAGGGGACGCAGGGACTGAGCGAGAGGGAGTCCGACGAAGAG
AGCAGGGGGATGTACATAAATACAGCATTTCACCAGCCATGACAGAGGAA
AAAGAGAGTGGGAAAGACAAAGAGACAAGAAGAGAGACGAAGAGAAACTG
CAGAGTGAGCGAGAGAAAATAGGATTCATTCGCGCACACAAATTGCGTCG
TTGCTAGTACTAGAGGGGGGGCGCAGAAGAAAGAGGACAAGGACGGACAT
GGAGAGAGAGGCATAGAGAAGGCAGTAAGGAGCCCACTTGTGTTTTTTTC
TCCTCAATTTTTTATTGAAAGAAGAAACTTAAATCTATGACTTAAAAAAA
AG
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protein sequence of NO09G00530.1

>NO09G00530.1-protein ID=NO09G00530.1-protein|Name=NO09G00530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=449bp
MHRLLALALACVCGLGWVQAFTPLSPSIVSSSSLKSGPWGQGRRKPSSSS
LPSVRRERPVGWGGIVVGGGTGNGGGGGGGGNGGAGGGSFGWSKEGSGDD
GEGDHGVELPRDVTELLARAGRQFTDLPASTQKALVGGSMTSGLLQRYLE
LEKKGGVVSSLLGMGIFRDRLLMDGYLMDKMVIEMAVGSTCIGGEEGGLG
GGFDEGSFNGNVCHSPRLAAAQLLAEWDRRREKLMAELDYAFADTLTCLV
ANFAAVLISAPSVAGAVPPSGRNIPANMFQIVPPGARPYALTDRILSPFL
KVPTLFAVGMAASLLGFGTTSLLTLIRNHLQSAKKDPLPSSLPAAVGAGE
WDTGRWFGKQTVAVVEEEVAPAEMPLLKTSVAVGVFLAVSTNIRYQVISG
LVEERGIAQLLGHNKLADHLASFVARSFNSYIGSANMIDYLKFLGLQQ*
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mRNA from alignment at chr9:212245..214592+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00530.1 ID=NO09G00530.1|Name=NO09G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2348bp|location=Sequence derived from alignment at chr9:212245..214592+ (Nannochloropsis oceanica)
TGTTTGGTATGTGTTTCTGCCTGTGTGGTAGGTGTAGGTCAACAACGTAG GTGTAGATATTGACGTGAGTACGTCTGCAAGTCAACTTGCTCGCTGTAGA CTCCTCCTGGGCGCGGGCCATTGCTCGTCCTTTTCATCCCTAAGCTATCC TTTCTTGTCCGTGCATACATACAACAGGTGGAAAATTAAATAACATCGCA ATGCACAGGCTGTTGGCCCTGGCATTAGCTTGTGTGTGCGGTCTGGGTTG GGTCCAGGCCTTCACACCCTTGTCGCCATCGATTGTTTCGTCCTCCTCGC TCAAGGTACGCATGTGTAGCCCATCCCCAAGGCCAGATACTAGCATCCCA AGGCTCTCAGATTTCTCACTCATTTCTTCTCTGGTGCCTGACAGAGTGGA CCCTGGGGACAAGGAAGACGGAAGCCCTCCTCGTCGTCATTACCTAGTGT TCGACGAGAGCGGCCCGTCGGGTGGGGAGGCATCGTTGTAGGGGGTACGT ATATGCTCAATGCAAAAATAATGTTGGGGGAATGAATGTGTTATTTGAAT CAAACACGCACTTGCTGGTGCTTATATTCATCTTACGTTCCAGGTGGAAC GGGTAACGGCGGTGGTGGCGGCGGCGGGGGTAATGGGGGAGCAGGCGGGG GATCATTTGGCTGGTCAAAGGAAGGCAGCGGGGACGACGGCGAGGGCGAC CACGGCGTAGAATTGCCCAGGGATGTGACAGAATTGCTTGCCAGGGCGGG AAGGCAATTCACGGACTTGCCCGCATCGACACAAAAGGCGTTGGTGGGTG GATCCATGACCTCGGGCTTGCTTCAGCGGTATCTGGAGCTGGAGAAGAAG GGTGGAGTCGTTTCCAGCCTATTGGGCATGGGCATCTTTCGGGACCGGTT GCTGATGGATGGGTACCTCATGGATAAAATGGTGATCGAGATGGCTGTTG GAAGTACGTGCATTGGAGGGGAGGAGGGAGGGTTAGGTGGGGGTTTCGAC GAGGGTTCTTTTAATGGAAACGTTTGCCATTCCCCGCGCTTGGGTAAGTA AGTATATCTTACCATCGCCTTTGTGCTTTCTTTTGGTCGACCTAATGCCC TCCCCTGTGCATTCAATCTCCCCCCCCCCCCCTCCTCTTCCTACCCCCTA GCCGCGGCCCAGCTCCTGGCAGAATGGGACCGGCGGCGGGAGAAGCTCAT GGCCGAGCTCGACTATGCCTTCGCAGACACACTTACCTGCCTAGTCGCCA ACTTCGCCGCCGTTCTCATCTCTGCCCCGTCTGTTGCCGGTGCCGTCCCC CCTTCTGGGAGGAACATCCCGGCGAACATGTTCCAAATAGTACCCCCCGG GGCTCGGCCTTATGCCTTGACCGACCGAATCCTCAGCCCTTTCCTCAAGG TTCCCACCCTCTTTGCCGTGGGGATGGCGGCGTCTCTCCTCGGGTTTGGC ACCACCAGTCTGCTTACCTTAATTCGGAACCATCTACAAAGTGCCAAGAA GGACCCTCTGCCCTCCTCCTTGCCAGCAGCAGTAGGGGCAGGAGAATGGG ACACCGGCAGGTGGTTCGGGAAGCAGACCGTGGCGGTAGTTGAGGAAGAG GTAGCACCGGCAGAGATGCCGTTGTTGAAGACGAGTGTTGCGGTGGGAGT GTTCCTTGCTGTGTCGACCAACATCCGGTACCAGGTCATCTCGGGGTTGG TTGAGGAGAGGGGTATTGCCCAGCTACTGGGGCACAACAAGCTCGCAGAC CATCTGGCATCGTTTGTGGCGAGGTCTTTTAACAGTTATATTGGCTCGGC GAACATGATTGACTATTTAAAGTTTCTAGGGTTGCAGCAATGAAGAGGGA GGAGGGTGGAAGCAGGAGGCGGGCCACGGGGCTGCAGGAGCAGCAGTAGT TGTCAGCTAGTAGAGAACGAGAAAGCATGTTGCGTCTCTCACAATTTTGG CGGATGAGGATGACGAGCGAAAGGTATATGACGACGACGGGGACGCAGGG ACTGGAGGGGACGCAGGGACTGAGCGAGAGGGAGTCCGACGAAGAGAGCA GGGGGATGTACATAAATACAGCATTTCACCAGCCATGACAGAGGAAAAAG AGAGTGGGAAAGACAAAGAGACAAGAAGAGAGACGAAGAGAAACTGCAGA GTGAGCGAGAGAAAATAGGATTCATTCGCGCACACAAATTGCGTCGTTGC TAGTACTAGAGGGGGGGCGCAGAAGAAAGAGGACAAGGACGGACATGGAG AGAGAGGCATAGAGAAGGCAGTAAGGAGCCCACTTGTGTTTTTTTCTCCT CAATTTTTTATTGAAAGAAGAAACTTAAATCTATGACTTAAAAAAAAG
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Coding sequence (CDS) from alignment at chr9:212245..214592+

>NO09G00530.1 ID=NO09G00530.1|Name=NO09G00530.1|organism=Nannochloropsis oceanica|type=CDS|length=1347bp|location=Sequence derived from alignment at chr9:212245..214592+ (Nannochloropsis oceanica)
ATGCACAGGCTGTTGGCCCTGGCATTAGCTTGTGTGTGCGGTCTGGGTTG
GGTCCAGGCCTTCACACCCTTGTCGCCATCGATTGTTTCGTCCTCCTCGC
TCAAGAGTGGACCCTGGGGACAAGGAAGACGGAAGCCCTCCTCGTCGTCA
TTACCTAGTGTTCGACGAGAGCGGCCCGTCGGGTGGGGAGGCATCGTTGT
AGGGGGTGGAACGGGTAACGGCGGTGGTGGCGGCGGCGGGGGTAATGGGG
GAGCAGGCGGGGGATCATTTGGCTGGTCAAAGGAAGGCAGCGGGGACGAC
GGCGAGGGCGACCACGGCGTAGAATTGCCCAGGGATGTGACAGAATTGCT
TGCCAGGGCGGGAAGGCAATTCACGGACTTGCCCGCATCGACACAAAAGG
CGTTGGTGGGTGGATCCATGACCTCGGGCTTGCTTCAGCGGTATCTGGAG
CTGGAGAAGAAGGGTGGAGTCGTTTCCAGCCTATTGGGCATGGGCATCTT
TCGGGACCGGTTGCTGATGGATGGGTACCTCATGGATAAAATGGTGATCG
AGATGGCTGTTGGAAGTACGTGCATTGGAGGGGAGGAGGGAGGGTTAGGT
GGGGGTTTCGACGAGGGTTCTTTTAATGGAAACGTTTGCCATTCCCCGCG
CTTGGCCGCGGCCCAGCTCCTGGCAGAATGGGACCGGCGGCGGGAGAAGC
TCATGGCCGAGCTCGACTATGCCTTCGCAGACACACTTACCTGCCTAGTC
GCCAACTTCGCCGCCGTTCTCATCTCTGCCCCGTCTGTTGCCGGTGCCGT
CCCCCCTTCTGGGAGGAACATCCCGGCGAACATGTTCCAAATAGTACCCC
CCGGGGCTCGGCCTTATGCCTTGACCGACCGAATCCTCAGCCCTTTCCTC
AAGGTTCCCACCCTCTTTGCCGTGGGGATGGCGGCGTCTCTCCTCGGGTT
TGGCACCACCAGTCTGCTTACCTTAATTCGGAACCATCTACAAAGTGCCA
AGAAGGACCCTCTGCCCTCCTCCTTGCCAGCAGCAGTAGGGGCAGGAGAA
TGGGACACCGGCAGGTGGTTCGGGAAGCAGACCGTGGCGGTAGTTGAGGA
AGAGGTAGCACCGGCAGAGATGCCGTTGTTGAAGACGAGTGTTGCGGTGG
GAGTGTTCCTTGCTGTGTCGACCAACATCCGGTACCAGGTCATCTCGGGG
TTGGTTGAGGAGAGGGGTATTGCCCAGCTACTGGGGCACAACAAGCTCGC
AGACCATCTGGCATCGTTTGTGGCGAGGTCTTTTAACAGTTATATTGGCT
CGGCGAACATGATTGACTATTTAAAGTTTCTAGGGTTGCAGCAATGA
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Synonyms
Publications