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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:212245..214592 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G00530.1 vs.
Match: EWM27746.1 (Protein of unknown function DUF3411 [Nannochloropsis gaditana]) HSP 1 Score: 434.1 bits (1115), Expect = 5.300e-118 Identity = 265/457 (57.99%), Postives = 321/457 (70.24%), Query Frame = 0
Query: 3 RLLALALACVCGLGWVQAFTPLSPSIVSS--SSLKSGPWGQGRRKPSSS-SLPSVRRERPVGWGGIVVGGGT-----GNGGGGGGGGNGGAGGGSFGWSKEGSGDDGEGDHGVELPRDVTELLARAGRQFTDLPASTQKALVGGSMTSGLLQRYLELEKKGGVVSSLLGMGIFRDRLLMDGYLMDKMVIEMAVGSTCIGGEEGGLGGGFDEGSFNGNVCHSPRLAAAQLLAEWDRRREKLMAELDYAFADTLTCLVANFAAVLISAPSVAGAVPP-SGRNIPANMFQIVPPGARPYALTDRILSPFLKVPTLFAVGMAASLLGFGTTSLLTLIRNHLQS--AKKDPLPSSLPAAVGAGEWDTGRWFGKQTVAVVEEEVAPAEMPLLKTSVAVGVFLAVSTNIRYQVISGLVEERGIAQLLGHNKLADHLASFVARSFNSYIGSANMIDYLKFLGLQQ 449
RL+AL LAC GLG V+AF PLS + S SSLK W GRRKP S S+ S R ERP+GW GGG G G GG G G G GGG+ GWSKEG+GDDG+G+ V LP+DV+ELLA+AGR+FT+LP STQKAL+ GSMTS LL+RYLE+E++GG+V+ LLG+ IFRDRLLMD YLMDK+ IEMAVG A AQ LAEWDRRREKL ELD+AFAD LTCLV+NFAAVLI+APS AGA + RNIPANMFQ+VPPG RPYAL+DR++ PFLK+PTLF VG+AASLLGFGTTS+LTL+R L S + P+ + +A GA E +E+V ++P++KTS+AVGVFLAVSTN+RYQ++SG+ EERGIA+ L HNKLADHLASF R+ N+++GS MIDYLKFL LQ+
Sbjct: 4 RLIALGLACG-GLGAVRAFAPLSSCLARSPESSLKDEVW-HGRRKPFSLFSIASCRNERPIGWKSPAPGGGLHWRSGGAGNGGVGDGGNGGGGGASGWSKEGNGDDGDGEGSVTLPQDVSELLAKAGRKFTELPTSTQKALMAGSMTSALLKRYLEVERRGGMVAQLLGISIFRDRLLMDVYLMDKIGIEMAVG------------------------------AVAQSLAEWDRRREKLFNELDFAFADLLTCLVSNFAAVLIAAPSAAGAAASNAARNIPANMFQMVPPGTRPYALSDRLVCPFLKMPTLFVVGLAASLLGFGTTSILTLLRKQLHSKPTQSSPIAPLIASATGAAE------------ETAQEDVV-QKIPVIKTSLAVGVFLAVSTNVRYQLVSGVFEERGIARYLAHNKLADHLASFGVRACNTFVGSGQMIDYLKFLKLQE 415
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G00530.1 ID=NO09G00530.1|Name=NO09G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2052bp TGTTTGGTATGTGTTTCTGCCTGTGTGGTAGGTGTAGGTCAACAACGTAG GTGTAGATATTGACGTGAGTACGTCTGCAAGTCAACTTGCTCGCTGTAGA CTCCTCCTGGGCGCGGGCCATTGCTCGTCCTTTTCATCCCTAAGCTATCC TTTCTTGTCCGTGCATACATACAACAGGTGGAAAATTAAATAACATCGCA ATGCACAGGCTGTTGGCCCTGGCATTAGCTTGTGTGTGCGGTCTGGGTTG GGTCCAGGCCTTCACACCCTTGTCGCCATCGATTGTTTCGTCCTCCTCGC TCAAGAGTGGACCCTGGGGACAAGGAAGACGGAAGCCCTCCTCGTCGTCA TTACCTAGTGTTCGACGAGAGCGGCCCGTCGGGTGGGGAGGCATCGTTGT AGGGGGTGGAACGGGTAACGGCGGTGGTGGCGGCGGCGGGGGTAATGGGG GAGCAGGCGGGGGATCATTTGGCTGGTCAAAGGAAGGCAGCGGGGACGAC GGCGAGGGCGACCACGGCGTAGAATTGCCCAGGGATGTGACAGAATTGCT TGCCAGGGCGGGAAGGCAATTCACGGACTTGCCCGCATCGACACAAAAGG CGTTGGTGGGTGGATCCATGACCTCGGGCTTGCTTCAGCGGTATCTGGAG CTGGAGAAGAAGGGTGGAGTCGTTTCCAGCCTATTGGGCATGGGCATCTT TCGGGACCGGTTGCTGATGGATGGGTACCTCATGGATAAAATGGTGATCG AGATGGCTGTTGGAAGTACGTGCATTGGAGGGGAGGAGGGAGGGTTAGGT GGGGGTTTCGACGAGGGTTCTTTTAATGGAAACGTTTGCCATTCCCCGCG CTTGGCCGCGGCCCAGCTCCTGGCAGAATGGGACCGGCGGCGGGAGAAGC TCATGGCCGAGCTCGACTATGCCTTCGCAGACACACTTACCTGCCTAGTC GCCAACTTCGCCGCCGTTCTCATCTCTGCCCCGTCTGTTGCCGGTGCCGT CCCCCCTTCTGGGAGGAACATCCCGGCGAACATGTTCCAAATAGTACCCC CCGGGGCTCGGCCTTATGCCTTGACCGACCGAATCCTCAGCCCTTTCCTC AAGGTTCCCACCCTCTTTGCCGTGGGGATGGCGGCGTCTCTCCTCGGGTT TGGCACCACCAGTCTGCTTACCTTAATTCGGAACCATCTACAAAGTGCCA AGAAGGACCCTCTGCCCTCCTCCTTGCCAGCAGCAGTAGGGGCAGGAGAA TGGGACACCGGCAGGTGGTTCGGGAAGCAGACCGTGGCGGTAGTTGAGGA AGAGGTAGCACCGGCAGAGATGCCGTTGTTGAAGACGAGTGTTGCGGTGG GAGTGTTCCTTGCTGTGTCGACCAACATCCGGTACCAGGTCATCTCGGGG TTGGTTGAGGAGAGGGGTATTGCCCAGCTACTGGGGCACAACAAGCTCGC AGACCATCTGGCATCGTTTGTGGCGAGGTCTTTTAACAGTTATATTGGCT CGGCGAACATGATTGACTATTTAAAGTTTCTAGGGTTGCAGCAATGAAGA GGGAGGAGGGTGGAAGCAGGAGGCGGGCCACGGGGCTGCAGGAGCAGCAG TAGTTGTCAGCTAGTAGAGAACGAGAAAGCATGTTGCGTCTCTCACAATT TTGGCGGATGAGGATGACGAGCGAAAGGTATATGACGACGACGGGGACGC AGGGACTGGAGGGGACGCAGGGACTGAGCGAGAGGGAGTCCGACGAAGAG AGCAGGGGGATGTACATAAATACAGCATTTCACCAGCCATGACAGAGGAA AAAGAGAGTGGGAAAGACAAAGAGACAAGAAGAGAGACGAAGAGAAACTG CAGAGTGAGCGAGAGAAAATAGGATTCATTCGCGCACACAAATTGCGTCG TTGCTAGTACTAGAGGGGGGGCGCAGAAGAAAGAGGACAAGGACGGACAT GGAGAGAGAGGCATAGAGAAGGCAGTAAGGAGCCCACTTGTGTTTTTTTC TCCTCAATTTTTTATTGAAAGAAGAAACTTAAATCTATGACTTAAAAAAA AG back to topprotein sequence of NO09G00530.1 >NO09G00530.1-protein ID=NO09G00530.1-protein|Name=NO09G00530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=449bp MHRLLALALACVCGLGWVQAFTPLSPSIVSSSSLKSGPWGQGRRKPSSSS LPSVRRERPVGWGGIVVGGGTGNGGGGGGGGNGGAGGGSFGWSKEGSGDD GEGDHGVELPRDVTELLARAGRQFTDLPASTQKALVGGSMTSGLLQRYLE LEKKGGVVSSLLGMGIFRDRLLMDGYLMDKMVIEMAVGSTCIGGEEGGLG GGFDEGSFNGNVCHSPRLAAAQLLAEWDRRREKLMAELDYAFADTLTCLV ANFAAVLISAPSVAGAVPPSGRNIPANMFQIVPPGARPYALTDRILSPFL KVPTLFAVGMAASLLGFGTTSLLTLIRNHLQSAKKDPLPSSLPAAVGAGE WDTGRWFGKQTVAVVEEEVAPAEMPLLKTSVAVGVFLAVSTNIRYQVISG LVEERGIAQLLGHNKLADHLASFVARSFNSYIGSANMIDYLKFLGLQQ* back to topmRNA from alignment at chr9:212245..214592+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G00530.1 ID=NO09G00530.1|Name=NO09G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2348bp|location=Sequence derived from alignment at chr9:212245..214592+ (Nannochloropsis oceanica) TGTTTGGTATGTGTTTCTGCCTGTGTGGTAGGTGTAGGTCAACAACGTAG
GTGTAGATATTGACGTGAGTACGTCTGCAAGTCAACTTGCTCGCTGTAGA
CTCCTCCTGGGCGCGGGCCATTGCTCGTCCTTTTCATCCCTAAGCTATCC
TTTCTTGTCCGTGCATACATACAACAGGTGGAAAATTAAATAACATCGCA
ATGCACAGGCTGTTGGCCCTGGCATTAGCTTGTGTGTGCGGTCTGGGTTG
GGTCCAGGCCTTCACACCCTTGTCGCCATCGATTGTTTCGTCCTCCTCGC
TCAAGGTACGCATGTGTAGCCCATCCCCAAGGCCAGATACTAGCATCCCA
AGGCTCTCAGATTTCTCACTCATTTCTTCTCTGGTGCCTGACAGAGTGGA
CCCTGGGGACAAGGAAGACGGAAGCCCTCCTCGTCGTCATTACCTAGTGT
TCGACGAGAGCGGCCCGTCGGGTGGGGAGGCATCGTTGTAGGGGGTACGT
ATATGCTCAATGCAAAAATAATGTTGGGGGAATGAATGTGTTATTTGAAT
CAAACACGCACTTGCTGGTGCTTATATTCATCTTACGTTCCAGGTGGAAC
GGGTAACGGCGGTGGTGGCGGCGGCGGGGGTAATGGGGGAGCAGGCGGGG
GATCATTTGGCTGGTCAAAGGAAGGCAGCGGGGACGACGGCGAGGGCGAC
CACGGCGTAGAATTGCCCAGGGATGTGACAGAATTGCTTGCCAGGGCGGG
AAGGCAATTCACGGACTTGCCCGCATCGACACAAAAGGCGTTGGTGGGTG
GATCCATGACCTCGGGCTTGCTTCAGCGGTATCTGGAGCTGGAGAAGAAG
GGTGGAGTCGTTTCCAGCCTATTGGGCATGGGCATCTTTCGGGACCGGTT
GCTGATGGATGGGTACCTCATGGATAAAATGGTGATCGAGATGGCTGTTG
GAAGTACGTGCATTGGAGGGGAGGAGGGAGGGTTAGGTGGGGGTTTCGAC
GAGGGTTCTTTTAATGGAAACGTTTGCCATTCCCCGCGCTTGGGTAAGTA
AGTATATCTTACCATCGCCTTTGTGCTTTCTTTTGGTCGACCTAATGCCC
TCCCCTGTGCATTCAATCTCCCCCCCCCCCCCTCCTCTTCCTACCCCCTA
GCCGCGGCCCAGCTCCTGGCAGAATGGGACCGGCGGCGGGAGAAGCTCAT
GGCCGAGCTCGACTATGCCTTCGCAGACACACTTACCTGCCTAGTCGCCA
ACTTCGCCGCCGTTCTCATCTCTGCCCCGTCTGTTGCCGGTGCCGTCCCC
CCTTCTGGGAGGAACATCCCGGCGAACATGTTCCAAATAGTACCCCCCGG
GGCTCGGCCTTATGCCTTGACCGACCGAATCCTCAGCCCTTTCCTCAAGG
TTCCCACCCTCTTTGCCGTGGGGATGGCGGCGTCTCTCCTCGGGTTTGGC
ACCACCAGTCTGCTTACCTTAATTCGGAACCATCTACAAAGTGCCAAGAA
GGACCCTCTGCCCTCCTCCTTGCCAGCAGCAGTAGGGGCAGGAGAATGGG
ACACCGGCAGGTGGTTCGGGAAGCAGACCGTGGCGGTAGTTGAGGAAGAG
GTAGCACCGGCAGAGATGCCGTTGTTGAAGACGAGTGTTGCGGTGGGAGT
GTTCCTTGCTGTGTCGACCAACATCCGGTACCAGGTCATCTCGGGGTTGG
TTGAGGAGAGGGGTATTGCCCAGCTACTGGGGCACAACAAGCTCGCAGAC
CATCTGGCATCGTTTGTGGCGAGGTCTTTTAACAGTTATATTGGCTCGGC
GAACATGATTGACTATTTAAAGTTTCTAGGGTTGCAGCAATGAAGAGGGA
GGAGGGTGGAAGCAGGAGGCGGGCCACGGGGCTGCAGGAGCAGCAGTAGT
TGTCAGCTAGTAGAGAACGAGAAAGCATGTTGCGTCTCTCACAATTTTGG
CGGATGAGGATGACGAGCGAAAGGTATATGACGACGACGGGGACGCAGGG
ACTGGAGGGGACGCAGGGACTGAGCGAGAGGGAGTCCGACGAAGAGAGCA
GGGGGATGTACATAAATACAGCATTTCACCAGCCATGACAGAGGAAAAAG
AGAGTGGGAAAGACAAAGAGACAAGAAGAGAGACGAAGAGAAACTGCAGA
GTGAGCGAGAGAAAATAGGATTCATTCGCGCACACAAATTGCGTCGTTGC
TAGTACTAGAGGGGGGGCGCAGAAGAAAGAGGACAAGGACGGACATGGAG
AGAGAGGCATAGAGAAGGCAGTAAGGAGCCCACTTGTGTTTTTTTCTCCT
CAATTTTTTATTGAAAGAAGAAACTTAAATCTATGACTTAAAAAAAAG back to topCoding sequence (CDS) from alignment at chr9:212245..214592+ >NO09G00530.1 ID=NO09G00530.1|Name=NO09G00530.1|organism=Nannochloropsis oceanica|type=CDS|length=1347bp|location=Sequence derived from alignment at chr9:212245..214592+ (Nannochloropsis oceanica) ATGCACAGGCTGTTGGCCCTGGCATTAGCTTGTGTGTGCGGTCTGGGTTG GGTCCAGGCCTTCACACCCTTGTCGCCATCGATTGTTTCGTCCTCCTCGC TCAAGAGTGGACCCTGGGGACAAGGAAGACGGAAGCCCTCCTCGTCGTCA TTACCTAGTGTTCGACGAGAGCGGCCCGTCGGGTGGGGAGGCATCGTTGT AGGGGGTGGAACGGGTAACGGCGGTGGTGGCGGCGGCGGGGGTAATGGGG GAGCAGGCGGGGGATCATTTGGCTGGTCAAAGGAAGGCAGCGGGGACGAC GGCGAGGGCGACCACGGCGTAGAATTGCCCAGGGATGTGACAGAATTGCT TGCCAGGGCGGGAAGGCAATTCACGGACTTGCCCGCATCGACACAAAAGG CGTTGGTGGGTGGATCCATGACCTCGGGCTTGCTTCAGCGGTATCTGGAG CTGGAGAAGAAGGGTGGAGTCGTTTCCAGCCTATTGGGCATGGGCATCTT TCGGGACCGGTTGCTGATGGATGGGTACCTCATGGATAAAATGGTGATCG AGATGGCTGTTGGAAGTACGTGCATTGGAGGGGAGGAGGGAGGGTTAGGT GGGGGTTTCGACGAGGGTTCTTTTAATGGAAACGTTTGCCATTCCCCGCG CTTGGCCGCGGCCCAGCTCCTGGCAGAATGGGACCGGCGGCGGGAGAAGC TCATGGCCGAGCTCGACTATGCCTTCGCAGACACACTTACCTGCCTAGTC GCCAACTTCGCCGCCGTTCTCATCTCTGCCCCGTCTGTTGCCGGTGCCGT CCCCCCTTCTGGGAGGAACATCCCGGCGAACATGTTCCAAATAGTACCCC CCGGGGCTCGGCCTTATGCCTTGACCGACCGAATCCTCAGCCCTTTCCTC AAGGTTCCCACCCTCTTTGCCGTGGGGATGGCGGCGTCTCTCCTCGGGTT TGGCACCACCAGTCTGCTTACCTTAATTCGGAACCATCTACAAAGTGCCA AGAAGGACCCTCTGCCCTCCTCCTTGCCAGCAGCAGTAGGGGCAGGAGAA TGGGACACCGGCAGGTGGTTCGGGAAGCAGACCGTGGCGGTAGTTGAGGA AGAGGTAGCACCGGCAGAGATGCCGTTGTTGAAGACGAGTGTTGCGGTGG GAGTGTTCCTTGCTGTGTCGACCAACATCCGGTACCAGGTCATCTCGGGG TTGGTTGAGGAGAGGGGTATTGCCCAGCTACTGGGGCACAACAAGCTCGC AGACCATCTGGCATCGTTTGTGGCGAGGTCTTTTAACAGTTATATTGGCT CGGCGAACATGATTGACTATTTAAAGTTTCTAGGGTTGCAGCAATGA back to top
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