NO09G00480.1, NO09G00480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00480.1
Unique NameNO09G00480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length858
Alignment locationchr9:201324..202181 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:201324..202181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00480.1 vs.
Match: EWM27704.1 (CRAL-TRIO domain protein [Nannochloropsis gaditana])

HSP 1 Score: 358.2 bits (918), Expect = 2.300e-95
Identity = 174/231 (75.32%), Postives = 196/231 (84.85%), Query Frame = 0 
Query:   21 ITSPPRPNLRGSTDGSSHPLSASFTSALPSVAHPDVFAEMQAKIVELASEDNVSPYNEEDMLNRVLVARNLHVAEAFHMWQNIVAWRKQYQPEFLSEEEAAPYLKLGVISTCGPDVNGRPCIYALNRNHLIDAEHHDRNLRTIVNVLEKTTVESSKIADGFIAVIIDQEGVGRKNMDTHLFIGKPGLVQVLQEYYPERLGSCYIIHTSWIFRLMWAIISPFLDDKTRKKVH 252
            I+  P P+L G+   S    S+S+   LPSV H  +F E+ AKI ELA EDNV PYN+ED+LNRVLVARNL V EAF MW NIVAWRK YQP+ LSEEEAAPYL  GV+S CGPD  GRPCIYALNRNH+IDAE+HD NLRTIVN+LEKTTVES++ ADGFIAVIIDQEGVGRKNMDT+LF+GKPGLVQ+LQEYYPERLGSCYI+HTSWIFRLMWAIISPFLD+KTR+KVH
Sbjct:   77 ISHRPVPSL-GNKASSEKNHSSSYFLDLPSVNHKAIFEELLAKITELAPEDNVPPYNDEDLLNRVLVARNLQVPEAFRMWMNIVAWRKHYQPQILSEEEAAPYLSKGVVSICGPDKQGRPCIYALNRNHIIDAENHDSNLRTIVNLLEKTTVESTRTADGFIAVIIDQEGVGRKNMDTNLFVGKPGLVQILQEYYPERLGSCYILHTSWIFRLMWAIISPFLDEKTRRKVH 306
The following BLAST results are available for this feature:
BLAST of NO09G00480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27704.12.300e-9575.32CRAL-TRIO domain protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00480NO09G00480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00480.1NO09G00480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00480.1.cds1NO09G00480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00480.1 ID=NO09G00480.1|Name=NO09G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=858bp
ATGGCGCCCGAGAAGTCCCCCATGGATGTAGAGCACGTAGGTCCGGAGCA
GTCCGAAGGCATCACTTCCCCTCCCCGCCCCAACCTCAGGGGCAGCACTG
ACGGCAGCTCCCATCCGCTCTCGGCAAGCTTCACCTCGGCCTTGCCATCA
GTTGCCCACCCTGACGTGTTTGCTGAAATGCAGGCCAAGATTGTCGAGTT
GGCCTCTGAGGACAATGTGTCGCCTTACAACGAGGAAGACATGTTGAACC
GGGTGCTGGTCGCGCGGAACCTACACGTTGCCGAGGCCTTTCACATGTGG
CAGAACATCGTCGCATGGCGGAAGCAGTACCAGCCCGAGTTCCTGTCGGA
GGAAGAGGCGGCGCCCTACTTGAAACTTGGTGTGATTTCCACATGTGGAC
CTGACGTGAATGGTCGCCCGTGCATTTACGCCTTGAACCGTAATCATTTA
ATTGACGCAGAGCACCACGATAGGAATCTGAGGACGATTGTAAACGTCCT
TGAGAAGACAACGGTGGAGTCCTCGAAGATTGCCGATGGATTTATTGCCG
TTATCATTGACCAGGAAGGGGTCGGAAGGAAGAACATGGACACCCACCTG
TTTATTGGCAAGCCTGGCCTGGTGCAGGTGCTGCAAGAGTATTATCCTGA
ACGTTTAGGCTCGTGCTATATAATCCATACATCATGGATTTTTCGATTGA
TGTGGGCGATAATCTCACCCTTTTTAGACGATAAAACAAGGAAGAAGGTG
CATGTCCTGCCGCACACGGAGGACTTGCTTCAGTACTTTTCCTTAGACAG
GCTTCCGGCCGATTTGCAGGCGAAGATGAATGCAGCAGCGGCGAAGGCGA
AGAAGTAG
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protein sequence of NO09G00480.1

>NO09G00480.1-protein ID=NO09G00480.1-protein|Name=NO09G00480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MAPEKSPMDVEHVGPEQSEGITSPPRPNLRGSTDGSSHPLSASFTSALPS
VAHPDVFAEMQAKIVELASEDNVSPYNEEDMLNRVLVARNLHVAEAFHMW
QNIVAWRKQYQPEFLSEEEAAPYLKLGVISTCGPDVNGRPCIYALNRNHL
IDAEHHDRNLRTIVNVLEKTTVESSKIADGFIAVIIDQEGVGRKNMDTHL
FIGKPGLVQVLQEYYPERLGSCYIIHTSWIFRLMWAIISPFLDDKTRKKV
HVLPHTEDLLQYFSLDRLPADLQAKMNAAAAKAKK*
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mRNA from alignment at chr9:201324..202181-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00480.1 ID=NO09G00480.1|Name=NO09G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=858bp|location=Sequence derived from alignment at chr9:201324..202181- (Nannochloropsis oceanica)
ATGGCGCCCGAGAAGTCCCCCATGGATGTAGAGCACGTAGGTCCGGAGCA
GTCCGAAGGCATCACTTCCCCTCCCCGCCCCAACCTCAGGGGCAGCACTG
ACGGCAGCTCCCATCCGCTCTCGGCAAGCTTCACCTCGGCCTTGCCATCA
GTTGCCCACCCTGACGTGTTTGCTGAAATGCAGGCCAAGATTGTCGAGTT
GGCCTCTGAGGACAATGTGTCGCCTTACAACGAGGAAGACATGTTGAACC
GGGTGCTGGTCGCGCGGAACCTACACGTTGCCGAGGCCTTTCACATGTGG
CAGAACATCGTCGCATGGCGGAAGCAGTACCAGCCCGAGTTCCTGTCGGA
GGAAGAGGCGGCGCCCTACTTGAAACTTGGTGTGATTTCCACATGTGGAC
CTGACGTGAATGGTCGCCCGTGCATTTACGCCTTGAACCGTAATCATTTA
ATTGACGCAGAGCACCACGATAGGAATCTGAGGACGATTGTAAACGTCCT
TGAGAAGACAACGGTGGAGTCCTCGAAGATTGCCGATGGATTTATTGCCG
TTATCATTGACCAGGAAGGGGTCGGAAGGAAGAACATGGACACCCACCTG
TTTATTGGCAAGCCTGGCCTGGTGCAGGTGCTGCAAGAGTATTATCCTGA
ACGTTTAGGCTCGTGCTATATAATCCATACATCATGGATTTTTCGATTGA
TGTGGGCGATAATCTCACCCTTTTTAGACGATAAAACAAGGAAGAAGGTG
CATGTCCTGCCGCACACGGAGGACTTGCTTCAGTACTTTTCCTTAGACAG
GCTTCCGGCCGATTTGCAGGCGAAGATGAATGCAGCAGCGGCGAAGGCGA
AGAAGTAG
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Coding sequence (CDS) from alignment at chr9:201324..202181-

>NO09G00480.1 ID=NO09G00480.1|Name=NO09G00480.1|organism=Nannochloropsis oceanica|type=CDS|length=858bp|location=Sequence derived from alignment at chr9:201324..202181- (Nannochloropsis oceanica)
ATGGCGCCCGAGAAGTCCCCCATGGATGTAGAGCACGTAGGTCCGGAGCA
GTCCGAAGGCATCACTTCCCCTCCCCGCCCCAACCTCAGGGGCAGCACTG
ACGGCAGCTCCCATCCGCTCTCGGCAAGCTTCACCTCGGCCTTGCCATCA
GTTGCCCACCCTGACGTGTTTGCTGAAATGCAGGCCAAGATTGTCGAGTT
GGCCTCTGAGGACAATGTGTCGCCTTACAACGAGGAAGACATGTTGAACC
GGGTGCTGGTCGCGCGGAACCTACACGTTGCCGAGGCCTTTCACATGTGG
CAGAACATCGTCGCATGGCGGAAGCAGTACCAGCCCGAGTTCCTGTCGGA
GGAAGAGGCGGCGCCCTACTTGAAACTTGGTGTGATTTCCACATGTGGAC
CTGACGTGAATGGTCGCCCGTGCATTTACGCCTTGAACCGTAATCATTTA
ATTGACGCAGAGCACCACGATAGGAATCTGAGGACGATTGTAAACGTCCT
TGAGAAGACAACGGTGGAGTCCTCGAAGATTGCCGATGGATTTATTGCCG
TTATCATTGACCAGGAAGGGGTCGGAAGGAAGAACATGGACACCCACCTG
TTTATTGGCAAGCCTGGCCTGGTGCAGGTGCTGCAAGAGTATTATCCTGA
ACGTTTAGGCTCGTGCTATATAATCCATACATCATGGATTTTTCGATTGA
TGTGGGCGATAATCTCACCCTTTTTAGACGATAAAACAAGGAAGAAGGTG
CATGTCCTGCCGCACACGGAGGACTTGCTTCAGTACTTTTCCTTAGACAG
GCTTCCGGCCGATTTGCAGGCGAAGATGAATGCAGCAGCGGCGAAGGCGA
AGAAGTAG
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Synonyms
Publications