NO09G00390.1, NO09G00390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00390.1
Unique NameNO09G00390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1429
Alignment locationchr9:176738..178824 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:176738..178824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO09G00390.1 vs.
Match: XP_005852443.1 (sorting nexin 1, partial [Nannochloropsis gaditana CCMP526]; EKU23388.1 sorting nexin 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 518.1 bits (1333), Expect = 2.800e-143
Identity = 269/406 (66.26%), Postives = 312/406 (76.85%), Query Frame = 0 
Query:    1 MTTSMSEPSHATNGLAIAVTDPTKHNEGVNAYIGYSITTNADDTREEFQAPRTTVLRRYSDFHFLHAKLGHAFPGTILPPLPDKALVGRFGASFVEGRRRALERYLLRVAKHPELGASRELVLFLQADEATLQHAKEEWKRSQRNQPQKVLKLFKQAFTQMEQSLSHAPTGHVTVPPSELDGRVDGIAARVHLLEVHYHSVAREASGWIRGEKEAGDGCFQLGLALTLLGQNEAGGLGEAIRSAGHAIDGVSAVALAAVEDGGVLLEEPLVEWSRAVGAAKVALLRRAEARKVYLESLVEVATRLHVKGKWVGMIGKEEKLNAAELAWSKAVEVAEKKKGEYEEVSERLVRDWGTFREEKAREVHRVLVAFAEAQVTRHEKMRKAWEEAMPKIRDVDVMHALDEKA 407
            M  S   P+ A NGL ++V DP KHNEGV A+IGY++ T ADD+R EFQAPRT+VLRRYSDF++LH KL H+FPG ILPPLP+KA+VGRF A FVE RRRALERYLLRV KHPELG S +LVLFLQ +EA L+HAK EW+R Q  QP KVL+L KQAF  ME SLS A TG V VP S+ D  +D IA  VH+LEVH+HS AREAS W+R EKEA DGCFQLGLALTLLGQNEAGGLGE IR  GHA+D  S +A  AVE  G+LLE PLVEWSR +G+AK+ALLRR EAR+ Y E+LVEVA R   K KWVGMIGKE+KL AAE AW KAV  AE K  E+E VS R+VRDWG FREEKA E+ +  VAF EAQV RHEKMR AW  A+ K+++VD    L+++A
Sbjct:    1 MANSSPNPTAALNGLLVSVADPLKHNEGVQAWIGYTVVTQADDSRSEFQAPRTSVLRRYSDFNWLHMKLSHSFPGRILPPLPEKAMVGRFEAPFVEARRRALERYLLRVVKHPELGKSSDLVLFLQENEAKLEHAKAEWRREQMRQP-KVLRLVKQAFAHMEHSLSSASTGKVEVPRSDSDAVLDDIATCVHVLEVHFHSAAREASTWVRREKEAADGCFQLGLALTLLGQNEAGGLGEVIRGTGHALDAASVLATGAVESSGLLLEGPLVEWSRGLGSAKLALLRRMEARRAYHEALVEVAVRAQGKEKWVGMIGKEDKLQAAEGAWGKAVAAAEAKNKEFETVSGRIVRDWGAFREEKAEELRKAAVAFLEAQVGRHEKMRTAWAGALSKVKEVDPKQGLNQEA 405
The following BLAST results are available for this feature:
BLAST of NO09G00390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852443.12.800e-14366.26sorting nexin 1, partial [Nannochloropsis gaditana... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00390NO09G00390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00390.1NO09G00390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00390.1.cds1NO09G00390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00390.1.cds2NO09G00390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00390.1.cds3NO09G00390.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00390.1.cds4NO09G00390.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00390.1 ID=NO09G00390.1|Name=NO09G00390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1429bp
CAGGTCCTGGACACCAGAGCTTCTTCCCACTGCCACAACACACCACAGCG
GCCGACAGCACCCCCACTTTCACCAGCATGACGACCAGTATGAGTGAGCC
AAGTCATGCCACGAACGGCCTAGCCATCGCCGTCACCGACCCCACTAAGC
ACAACGAAGGCGTGAACGCTTACATCGGGTACAGCATCACCACCAACGCG
GACGACACCCGCGAAGAGTTCCAAGCTCCCCGCACGACCGTCCTGCGTCG
TTACTCCGACTTTCATTTCCTCCACGCCAAGCTGGGCCATGCATTCCCCG
GCACCATCCTGCCCCCCCTGCCTGACAAAGCCCTGGTTGGGCGCTTTGGC
GCGAGTTTTGTGGAAGGTCGTCGGCGGGCCTTGGAACGATATTTACTGCG
AGTGGCGAAACACCCTGAATTAGGCGCATCGCGGGAGCTGGTCCTGTTCC
TTCAGGCCGACGAAGCCACCCTGCAACACGCTAAGGAGGAATGGAAGCGC
AGCCAGAGGAACCAACCGCAGAAAGTTCTCAAGCTCTTCAAACAAGCCTT
CACGCAAATGGAGCAATCCCTCTCCCATGCACCCACCGGGCACGTCACAG
TGCCGCCGTCGGAGCTGGACGGGCGGGTGGATGGCATTGCTGCCCGTGTC
CACCTCCTAGAAGTCCATTACCACAGTGTAGCGCGCGAGGCCTCGGGCTG
GATCCGGGGAGAAAAGGAGGCGGGCGACGGCTGTTTCCAGCTCGGACTGG
CATTGACGTTACTGGGGCAGAACGAAGCGGGAGGGCTGGGGGAGGCGATC
CGATCCGCAGGGCACGCGATCGATGGGGTGAGTGCTGTTGCCCTGGCGGC
CGTGGAGGATGGAGGGGTATTGCTGGAGGAGCCGTTGGTAGAGTGGAGCC
GGGCGGTGGGTGCGGCCAAGGTGGCGTTGCTTCGACGGGCGGAAGCGAGG
AAGGTCTACCTGGAGTCCTTGGTGGAGGTGGCGACGCGGTTGCACGTTAA
AGGGAAATGGGTGGGGATGATAGGGAAGGAGGAGAAGCTGAATGCGGCGG
AGCTGGCGTGGAGCAAGGCGGTGGAGGTGGCGGAGAAGAAGAAGGGGGAG
TACGAGGAGGTTTCGGAGCGGCTGGTCAGGGATTGGGGTACATTTAGGGA
AGAGAAGGCGAGGGAGGTCCACCGTGTCCTTGTGGCCTTTGCAGAGGCGC
AGGTGACGAGGCACGAGAAGATGCGCAAGGCATGGGAGGAGGCAATGCCG
AAGATCAGAGACGTGGATGTCATGCACGCCTTAGACGAAAAGGCGGTCAA
ACCTGTCACCACTGCTTCTGCTGCTGCTGCTGCTGCTGCTGCGGGTGGTG
TCAGTGGAGAGGGAGGGAAGGAGGTGGGAGAAAAGAAGGAAGGGGAACGA
GAGGAGGCAGCAGCGCCAAGAGTGTAGAT
back to top

protein sequence of NO09G00390.1

>NO09G00390.1-protein ID=NO09G00390.1-protein|Name=NO09G00390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp
MTTSMSEPSHATNGLAIAVTDPTKHNEGVNAYIGYSITTNADDTREEFQA
PRTTVLRRYSDFHFLHAKLGHAFPGTILPPLPDKALVGRFGASFVEGRRR
ALERYLLRVAKHPELGASRELVLFLQADEATLQHAKEEWKRSQRNQPQKV
LKLFKQAFTQMEQSLSHAPTGHVTVPPSELDGRVDGIAARVHLLEVHYHS
VAREASGWIRGEKEAGDGCFQLGLALTLLGQNEAGGLGEAIRSAGHAIDG
VSAVALAAVEDGGVLLEEPLVEWSRAVGAAKVALLRRAEARKVYLESLVE
VATRLHVKGKWVGMIGKEEKLNAAELAWSKAVEVAEKKKGEYEEVSERLV
RDWGTFREEKAREVHRVLVAFAEAQVTRHEKMRKAWEEAMPKIRDVDVMH
ALDEKAVKPVTTASAAAAAAAAGGVSGEGGKEVGEKKEGEREEAAAPRV*
back to top

mRNA from alignment at chr9:176738..178824+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00390.1 ID=NO09G00390.1|Name=NO09G00390.1|organism=Nannochloropsis oceanica|type=mRNA|length=2087bp|location=Sequence derived from alignment at chr9:176738..178824+ (Nannochloropsis oceanica)
CAGGTCCTGGACACCAGAGCTTCTTCCCACTGCCACAACACACCACAGCG
GCCGACAGCACCCCCACTTTCACCAGCATGACGACCAGTATGAGTGAGCC
AAGTCATGCCACGAGTAAGTGTTCCTGAGGTGAAGGAGTGGAGGGTGGAA
GGATGAACACCAGAGCCACACTGGCTGGCCCATTCTCGCTGATTTATACC
CTTCCTTTGTGTACATGCACGCGCGCGCTGTTCTAGAAACACCCGCACGC
ATGTGATTCAAAGTGTTCCTCTAGTACACATAGCTTCCTGCAACTGACGC
CTTGTCCTCAACCATCCAACCTATTTCCCACGTCCTACCCTCCGAAACAC
TAGACGGCCTAGCCATCGCCGTCACCGACCCCACTAAGCACAACGAAGGC
GTGAACGCTTACATCGGGTACAGCATCACCACCAACGCGGACGACACCCG
CGAAGAGTTCCAAGCTCCCCGCACGACCGTCCTGCGTCGTTACTCCGACT
TTCATTTCCTCCACGCCAAGCTGGGCCATGCATTCCCCGGCACCATCCTG
CCCCCCCTGCCTGACAAAGCCCTGGTTGGGCGCTTTGGCGCGAGTTTTGT
GGAAGGTCGTCGGCGGGCCTTGGAACGATATTTACTGCGAGTGGCGAAAC
ACCCTGAATTAGGTCAGTGGGCTTCTTTGGGCTTGTCAGTCGGTTTGTTT
GGTTTATCCCTCCCTCCCTCCCTCCCTCCCTCGCCTCCTTACCCTCCCCT
ATTCACTGACGAGGAACATGTTGTGGGCCGTTACAGAGGGCAAGCTTTTG
CGGCGTCAACATTATTCTCATTTGCCATCCTTGTTTTGTTCCTGTCCAAC
CCCTTTTCTCCCTCCCTTCTTCGCACCAGGCGCATCGCGGGAGCTGGTCC
TGTTCCTTCAGGCCGACGAAGCCACCCTGCAACACGCTAAGGAGGAATGG
AAGCGCAGCCAGAGGAACCAACCGCAGAAAGTTCTCAAGCTCTTCAAACA
AGCCTTCACGCAAATGGAGCAATCCCTCTCCCATGCACCCACCGGGCACG
TCACAGTGCCGCCGTCGGAGCTGGACGGGCGGGTGGATGGCATTGCTGCC
CGTGTCCACCTCCTAGAAGTCCATTACCACAGTGTAGCGCGCGAGGCCTC
GGGCTGGATCCGGGGAGAAAAGGAGGCGGGCGACGGCTGTTTCCAGCTCG
GACTGGCATTGACGTTACTGGGGCAGAACGAAGCGGGAGGGCTGGGGGAG
GCGATCCGATCCGCAGGGCACGCGATCGATGGGGTGAGTGCTGTTGCCCT
GGCGGCCGTGGAGGATGGAGGGGTATTGCTGGAGGAGCCGTTGGTAGAGT
GGAGCCGGGCGGTGGGTGCGGCCAAGGTGGCGTTGCTTCGACGGGCGGAA
GCGAGGAAGGTCTACCTGGAGTCCTTGGTGGAGGTGGCGACGCGGTTGCA
CGTTAAAGGGAAATGGGTGGGGATGATAGGGAAGGAGGAGAAGCTGAATG
CGGCGGAGCTGGCGTGGAGCAAGGCGGTGGAGGTGGCGGAGAAGAAGAAG
GGGGAGTACGAGGAGGTTTCGGAGCGGCTGGTCAGGGATTGGGGTACATT
TAGGGAAGAGAAGGCGAGGGAGGTCCACCGTGTCCTTGTGGCCTTTGCAG
AGGCGCAGGTGACGAGGCACGAGAAGATGCGCAAGGCATGGGAGGAGGCA
ATGCCGAAGGTAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAATGAA
TGGAGCGGGGGAGGCCCCCCTATGGATATTTTCTTGGCTCATTTTGGATG
ACTCAACTCTATGTCTTTACACACTTTGTACCTTTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTTTCTTCCTCCCTCCTTTATACCCTCCTTCTCAT
TCTTCGTATAGATCAGAGACGTGGATGTCATGCACGCCTTAGACGAAAAG
GCGGTCAAACCTGTCACCACTGCTTCTGCTGCTGCTGCTGCTGCTGCTGC
GGGTGGTGTCAGTGGAGAGGGAGGGAAGGAGGTGGGAGAAAAGAAGGAAG
GGGAACGAGAGGAGGCAGCAGCGCCAAGAGTGTAGAT
back to top

Coding sequence (CDS) from alignment at chr9:176738..178824+

>NO09G00390.1 ID=NO09G00390.1|Name=NO09G00390.1|organism=Nannochloropsis oceanica|type=CDS|length=1350bp|location=Sequence derived from alignment at chr9:176738..178824+ (Nannochloropsis oceanica)
ATGACGACCAGTATGAGTGAGCCAAGTCATGCCACGAACGGCCTAGCCAT
CGCCGTCACCGACCCCACTAAGCACAACGAAGGCGTGAACGCTTACATCG
GGTACAGCATCACCACCAACGCGGACGACACCCGCGAAGAGTTCCAAGCT
CCCCGCACGACCGTCCTGCGTCGTTACTCCGACTTTCATTTCCTCCACGC
CAAGCTGGGCCATGCATTCCCCGGCACCATCCTGCCCCCCCTGCCTGACA
AAGCCCTGGTTGGGCGCTTTGGCGCGAGTTTTGTGGAAGGTCGTCGGCGG
GCCTTGGAACGATATTTACTGCGAGTGGCGAAACACCCTGAATTAGGCGC
ATCGCGGGAGCTGGTCCTGTTCCTTCAGGCCGACGAAGCCACCCTGCAAC
ACGCTAAGGAGGAATGGAAGCGCAGCCAGAGGAACCAACCGCAGAAAGTT
CTCAAGCTCTTCAAACAAGCCTTCACGCAAATGGAGCAATCCCTCTCCCA
TGCACCCACCGGGCACGTCACAGTGCCGCCGTCGGAGCTGGACGGGCGGG
TGGATGGCATTGCTGCCCGTGTCCACCTCCTAGAAGTCCATTACCACAGT
GTAGCGCGCGAGGCCTCGGGCTGGATCCGGGGAGAAAAGGAGGCGGGCGA
CGGCTGTTTCCAGCTCGGACTGGCATTGACGTTACTGGGGCAGAACGAAG
CGGGAGGGCTGGGGGAGGCGATCCGATCCGCAGGGCACGCGATCGATGGG
GTGAGTGCTGTTGCCCTGGCGGCCGTGGAGGATGGAGGGGTATTGCTGGA
GGAGCCGTTGGTAGAGTGGAGCCGGGCGGTGGGTGCGGCCAAGGTGGCGT
TGCTTCGACGGGCGGAAGCGAGGAAGGTCTACCTGGAGTCCTTGGTGGAG
GTGGCGACGCGGTTGCACGTTAAAGGGAAATGGGTGGGGATGATAGGGAA
GGAGGAGAAGCTGAATGCGGCGGAGCTGGCGTGGAGCAAGGCGGTGGAGG
TGGCGGAGAAGAAGAAGGGGGAGTACGAGGAGGTTTCGGAGCGGCTGGTC
AGGGATTGGGGTACATTTAGGGAAGAGAAGGCGAGGGAGGTCCACCGTGT
CCTTGTGGCCTTTGCAGAGGCGCAGGTGACGAGGCACGAGAAGATGCGCA
AGGCATGGGAGGAGGCAATGCCGAAGATCAGAGACGTGGATGTCATGCAC
GCCTTAGACGAAAAGGCGGTCAAACCTGTCACCACTGCTTCTGCTGCTGC
TGCTGCTGCTGCTGCGGGTGGTGTCAGTGGAGAGGGAGGGAAGGAGGTGG
GAGAAAAGAAGGAAGGGGAACGAGAGGAGGCAGCAGCGCCAAGAGTGTAG
back to top
Synonyms
Publications