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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr9 | genome | chr9:173800..176604 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G00380.1 vs.
Match: EWM27761.1 (splicing factor 3b subunit 2 [Nannochloropsis gaditana]) HSP 1 Score: 729.9 bits (1883), Expect = 6.300e-207 Identity = 431/607 (71.00%), Postives = 482/607 (79.41%), Query Frame = 0
Query: 16 QANGKPAGKLSKNQRKREKKKVAKQAAKMEEGASTNGSSSAPSSAPSHPPSTPRVEIEYVSADLESELSAVGDDPVLDEFKEIFKKFSTAEELCGTAEGEEEEGEEDEDEEGGKKKKKAGAGGVDGDSSDEEGDEERGARLSRKQRKKLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVHIKAYRNTVPVPRHWCHKRKYLTGKRGIEKAPFDLPEFIKATGIQKQREAMEEKLSLQTSRQKMRERVNPKMGRMDIDYAILEDAFLRYQTKPSLTSHGDLYYEGKEFETHTKNYTPGQLSSALIEALSIPPLYPPPWLMNMQRYGPPPSYPALRIPGLNAPLPEGASYGMHPGGWGKPPVDEYGRPLYGDVFGVLGEGGTEGRMGGMG--GGEEVNRKHWGEVEYEEEE-EEEEEEEEEESEGEEGEEYGGGMETPMTDGTGLSSVVSGLATPAEG-GIELRKKGGLETPSEGPRELYKVLEQKERGEGGGGGFFGGDKRYELGGGGKGG---------GRGGGSDVSIAINPDELVDQLGDEEALKERYEQEVEARQTAKRLADDDSDEEGGGVGGRGGGRKKRKAEKAGGGAGGVKKSKEFKF 610
++ G+ G+ K + ++++ ++ G TNGS S AP P+ P VEI+YVSADLESEL+ GDDP L+EF+EIFKKFSTAEELCGT+ +E+ DE EG +K G G G DEE +E+ G+RLSRKQRKKLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLV +KAYRN+VPVPRHWCHKRKYLTGKRGIEKAPF+LP+F+KATGIQKQREAMEEKL LQT+RQKMRERVNPKMGRMDIDYA+LEDAFLRYQTKP LT HG+LYYEGKEFE T+N+TPG LS L+ AL IPPLYPPPWLMNMQRYGPPP+YPALRIPGLNAPLPEGAS+GMHPGGWGKPPVDEYGRPLYGDVFGVLG GG G +GG G G EEVNR+HWG VE EEEE EEEEEEEEEE EGEE + G+ETP+T+ TGLSSVVSGL TP E G+ELRK+ GLE PSE P+ELYKVLEQ+E G GG GGFF GDK+Y + GGG GG G G SDVSIA+NPDEL DQLGDEEALKERYEQEVEARQ AKRLADDDSD+E +GGGRKKRK EK G G KK KEFKF
Sbjct: 13 KSTGRRRGRSRKIKEGERRRRLPREWRMSPGGGHTNGSVPTASGAPPPAPA-PDVEIQYVSADLESELA--GDDPALEEFREIFKKFSTAEELCGTSVDDEKG--VDEGGEGAGEKVSGGEGR--GGEEDEE-EEKTGSRLSRKQRKKLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVQMKAYRNSVPVPRHWCHKRKYLTGKRGIEKAPFELPDFVKATGIQKQREAMEEKLRLQTARQKMRERVNPKMGRMDIDYAVLEDAFLRYQTKPPLTPHGELYYEGKEFEARTRNHTPGVLSEELVNALGIPPLYPPPWLMNMQRYGPPPAYPALRIPGLNAPLPEGASFGMHPGGWGKPPVDEYGRPLYGDVFGVLG-GGDGGALGGEGGAGAEEVNRRHWGGVEVEEEEVEEEEEEEEEEEEGEERRKDESGLETPVTEATGLSSVVSGLETPGEAMGMELRKQAGLEAPSEEPKELYKVLEQRE-GGGGAGGFFAGDKKYVMEGGGGGGRAMGGAGRVGARGASDVSIALNPDELADQLGDEEALKERYEQEVEARQAAKRLADDDSDDE------QGGGRKKRKGEK---GWSGGKKGKEFKF 600
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G00380.1 ID=NO09G00380.1|Name=NO09G00380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2698bp
GTGTACATGAAAGTGGAAATATTATAAAGCCAAGCTTGGAGCGAGAGCGA
ACAAAGTTTGTGAACGCAGACTTTTTTCTTCTTCCACCTCCCCCGCCCCT
CCCCTTGCCTGACCTAACACACACTATCTACGTCTGTCTTGGTTCCCCAA
CCTTTCCTGTTTAAGAACTTTGTACTGAAACAACTAATAGAGGCATACTT
AGGCGCCGGGGTGGAACCGGGTGTCCTTGGACAAGGCTGCGTTTGGCGGT
TGATATCCCCTTCCCAGCCACGTTGTGTTGTGATAGATGATGCGGACTAC
CATCCATGTCCACTCACTTTTCACCCGTCATATACAGGCAAGCCAGTTCT
TTCGTCCACCAAGCACGCGAAAGAGGAAGTATAGAGCGCGTCGTGTAAGT
TTTCTTGGGAAGGGGCGTTGCGGTTGTCCCGTCTTGATCAGCCACCCTGG
GGAATCGGTGGGCAGGCGCGTGAAGCTGAGTGAGGACCAGAAAGACGCTG
CCATAAATACTACGTCTGCAAGCCACCTGCACCATGTCGGACGACGAGTA
CGACCACCAAGGTCAAAACGGCACCTCCCAGGCAAATGGGAAGCCGGCTG
GTAAGCTCTCCAAGAACCAAAGAAAAAGAGAAAAGAAGAAGGTTGCGAAG
CAGGCGGCCAAGATGGAAGAAGGGGCCTCCACCAACGGCAGCAGTAGCGC
GCCCTCCTCCGCTCCTTCACATCCCCCTTCCACTCCTCGAGTGGAGATCG
AGTATGTTTCGGCGGACCTAGAGAGCGAGCTATCGGCTGTGGGGGACGAT
CCCGTCCTGGATGAGTTCAAAGAGATTTTCAAGAAGTTTTCGACCGCGGA
AGAATTGTGTGGAACCGCTGAAGGGGAGGAGGAGGAAGGCGAGGAGGACG
AGGACGAGGAGGGGGGTAAGAAGAAGAAGAAGGCTGGTGCCGGAGGCGTT
GATGGCGACAGTAGTGACGAGGAGGGGGATGAAGAGCGGGGGGCCCGTCT
TTCGCGGAAGCAGCGGAAAAAGCTTAATCGGTTGTCGGTCGCGGAACTGA
AGCAACTCGTGGCGCGGCCCGATGTGGTGGAGGCCCACGACGTGACCTCC
CAAGACCCCCAGCTGTTGGTCCACATCAAGGCCTACCGCAATACCGTCCC
CGTCCCCCGGCACTGGTGCCACAAACGCAAGTACCTCACCGGCAAACGTG
GCATCGAAAAAGCGCCGTTTGACCTTCCTGAGTTCATCAAGGCCACAGGC
ATCCAAAAACAACGCGAGGCTATGGAAGAGAAGCTCTCCCTGCAAACTTC
CCGTCAAAAAATGCGCGAACGCGTGAACCCCAAAATGGGTCGCATGGACA
TTGATTACGCCATTCTCGAGGATGCCTTTCTCCGGTACCAGACCAAGCCC
TCCCTCACCTCCCACGGCGACCTCTATTACGAGGGCAAAGAGTTTGAAAC
CCACACTAAGAACTACACCCCCGGCCAACTCTCCTCCGCCCTCATCGAGG
CCCTGAGCATTCCCCCCCTCTACCCTCCCCCGTGGCTCATGAACATGCAG
CGATATGGACCGCCGCCGTCTTATCCGGCGTTGCGGATTCCAGGGCTGAA
TGCCCCCTTGCCGGAGGGGGCGAGTTATGGCATGCATCCCGGTGGGTGGG
GGAAGCCTCCCGTGGATGAGTACGGACGACCGCTGTATGGTGACGTATTT
GGAGTGCTGGGGGAGGGAGGGACGGAGGGGAGGATGGGTGGCATGGGAGG
CGGCGAAGAAGTGAACAGGAAGCATTGGGGAGAGGTAGAATATGAGGAGG
AGGAGGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGAGTGAGGGGGAGGAA
GGGGAAGAATATGGGGGAGGGATGGAGACGCCGATGACGGATGGAACGGG
TTTGAGTAGTGTGGTGAGCGGGTTGGCGACGCCGGCGGAGGGAGGGATTG
AGTTGAGGAAGAAGGGAGGGTTAGAGACGCCGAGTGAAGGGCCAAGGGAG
CTTTACAAGGTGCTTGAGCAGAAAGAGAGGGGGGAGGGCGGGGGAGGAGG
GTTTTTCGGGGGGGACAAGAGGTATGAGTTGGGGGGAGGAGGAAAGGGAG
GAGGAAGGGGGGGAGGGAGTGATGTGTCGATTGCCATCAATCCTGATGAG
CTGGTAGATCAGCTGGGCGATGAAGAGGCGCTCAAGGAGAGGTACGAGCA
GGAGGTGGAGGCAAGGCAGACGGCGAAGCGACTGGCGGATGACGATAGTG
ACGAGGAGGGAGGAGGAGTGGGTGGAAGGGGGGGAGGAAGGAAGAAGCGG
AAGGCGGAGAAGGCGGGAGGGGGAGCAGGGGGGGTAAAGAAGAGTAAGGA
ATTCAAATTTTAAGGATTTCAAAATTAAAAGGGAGGGGCACATGAGTAGG
TCTTGTTATATACGTTGGGGGCGGAGGTAGGTAGAGGGAGACAAGGGGAG
TAGTGGAGGGGAAAGTGGGGGAGAGAGCGAATCCCTCTCAGGCTAGTGAC
GAGAAGTAGTGAAGAACCAAGACAGGAAAGCTGATCAGCATCGGACGAGA
AAAGCGTGTAGTTTCCACACGCCCATTTGCGTACTTATTTCCTCCCCCAC
ACACAGATCAAACTTAAATTGAAGGGAAACTTTAACATTTCCACCCATTG
GAAAAAGAACACCAAAAGAAATAAAACAAGGCAGTTTCTCGTCTCGCC back to topprotein sequence of NO09G00380.1 >NO09G00380.1-protein ID=NO09G00380.1-protein|Name=NO09G00380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=610bp
MSDDEYDHQGQNGTSQANGKPAGKLSKNQRKREKKKVAKQAAKMEEGAST
NGSSSAPSSAPSHPPSTPRVEIEYVSADLESELSAVGDDPVLDEFKEIFK
KFSTAEELCGTAEGEEEEGEEDEDEEGGKKKKKAGAGGVDGDSSDEEGDE
ERGARLSRKQRKKLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVHIKA
YRNTVPVPRHWCHKRKYLTGKRGIEKAPFDLPEFIKATGIQKQREAMEEK
LSLQTSRQKMRERVNPKMGRMDIDYAILEDAFLRYQTKPSLTSHGDLYYE
GKEFETHTKNYTPGQLSSALIEALSIPPLYPPPWLMNMQRYGPPPSYPAL
RIPGLNAPLPEGASYGMHPGGWGKPPVDEYGRPLYGDVFGVLGEGGTEGR
MGGMGGGEEVNRKHWGEVEYEEEEEEEEEEEEEESEGEEGEEYGGGMETP
MTDGTGLSSVVSGLATPAEGGIELRKKGGLETPSEGPRELYKVLEQKERG
EGGGGGFFGGDKRYELGGGGKGGGRGGGSDVSIAINPDELVDQLGDEEAL
KERYEQEVEARQTAKRLADDDSDEEGGGVGGRGGGRKKRKAEKAGGGAGG
VKKSKEFKF* back to topmRNA from alignment at chr9:173800..176604- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G00380.1 ID=NO09G00380.1|Name=NO09G00380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2805bp|location=Sequence derived from alignment at chr9:173800..176604- (Nannochloropsis oceanica)
GTGTACATGAAAGTGGAAATATTATAAAGCCAAGCTTGGAGCGAGAGCGA
ACAAAGTTTGTGAACGCAGACTTTTTTCTTCTTCCACCTCCCCCGCCCCT
CCCCTTGCCTGACCTAACACACACTATCTACGTCTGTCTTGGTTCCCCAA
CCTTTCCTGTTTAAGAACTTTGTACTGAAACAACTAATAGAGGCATACTT
AGGCGCCGGGGTGGAACCGGGTGTCCTTGGACAAGGCTGCGTTTGGCGGT
TGATATCCCCTTCCCAGCCACGTTGTGTTGTGATAGATGATGCGGACTAC
CATCCATGTCCACTCACTTTTCACCCGTCATATACAGGCAAGCCAGTTCT
TTCGTCCACCAAGCACGCGAAAGAGGAAGTATAGAGCGCGTCGTGTAAGT
TTTCTTGGGAAGGGGCGTTGCGGTTGTCCCGTCTTGATCAGCCACCCTGG
GGAATCGGTGGGCAGGCGCGTGAAGCTGAGTGAGGACCAGAAAGACGCTG
CCATAAATACTACGTCTGCAAGCCACCTGCACCATGTCGGACGACGAGTA
CGACCACCAAGGTCAAAACGGCACCTCCCAGGCAAATGGGAAGCCGGCTG
GTAAGCTCTCCAAGAACCAAAGAAAAAGGTATGACATCGACCTCCCCTCC
CTCCTACCTCCCTCTCTCTCTCCCTGTTGAAGGCCCTTCCGCTTATCCAT
CCTTAACGCCTTTATGCCTACCAAACCAACCATAGAGAAAAGAAGAAGGT
TGCGAAGCAGGCGGCCAAGATGGAAGAAGGGGCCTCCACCAACGGCAGCA
GTAGCGCGCCCTCCTCCGCTCCTTCACATCCCCCTTCCACTCCTCGAGTG
GAGATCGAGTATGTTTCGGCGGACCTAGAGAGCGAGCTATCGGCTGTGGG
GGACGATCCCGTCCTGGATGAGTTCAAAGAGATTTTCAAGAAGTTTTCGA
CCGCGGAAGAATTGTGTGGAACCGCTGAAGGGGAGGAGGAGGAAGGCGAG
GAGGACGAGGACGAGGAGGGGGGTAAGAAGAAGAAGAAGGCTGGTGCCGG
AGGCGTTGATGGCGACAGTAGTGACGAGGAGGGGGATGAAGAGCGGGGGG
CCCGTCTTTCGCGGAAGCAGCGGAAAAAGCTTAATCGGTTGTCGGTCGCG
GAACTGAAGCAACTCGTGGCGCGGCCCGATGTGGTGGAGGCCCACGACGT
GACCTCCCAAGACCCCCAGCTGTTGGTCCACATCAAGGCCTACCGCAATA
CCGTCCCCGTCCCCCGGCACTGGTGCCACAAACGCAAGTACCTCACCGGC
AAACGTGGCATCGAAAAAGCGCCGTTTGACCTTCCTGAGTTCATCAAGGC
CACAGGCATCCAAAAACAACGCGAGGCTATGGAAGAGAAGCTCTCCCTGC
AAACTTCCCGTCAAAAAATGCGCGAACGCGTGAACCCCAAAATGGGTCGC
ATGGACATTGATTACGCCATTCTCGAGGATGCCTTTCTCCGGTACCAGAC
CAAGCCCTCCCTCACCTCCCACGGCGACCTCTATTACGAGGGCAAAGAGT
TTGAAACCCACACTAAGAACTACACCCCCGGCCAACTCTCCTCCGCCCTC
ATCGAGGCCCTGAGCATTCCCCCCCTCTACCCTCCCCCGTGGCTCATGAA
CATGCAGCGATATGGACCGCCGCCGTCTTATCCGGCGTTGCGGATTCCAG
GGCTGAATGCCCCCTTGCCGGAGGGGGCGAGTTATGGCATGCATCCCGGT
GGGTGGGGGAAGCCTCCCGTGGATGAGTACGGACGACCGCTGTATGGTGA
CGTATTTGGAGTGCTGGGGGAGGGAGGGACGGAGGGGAGGATGGGTGGCA
TGGGAGGCGGCGAAGAAGTGAACAGGAAGCATTGGGGAGAGGTAGAATAT
GAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGAGTGAGGG
GGAGGAAGGGGAAGAATATGGGGGAGGGATGGAGACGCCGATGACGGATG
GAACGGGTTTGAGTAGTGTGGTGAGCGGGTTGGCGACGCCGGCGGAGGGA
GGGATTGAGTTGAGGAAGAAGGGAGGGTTAGAGACGCCGAGTGAAGGGCC
AAGGGAGCTTTACAAGGTGCTTGAGCAGAAAGAGAGGGGGGAGGGCGGGG
GAGGAGGGTTTTTCGGGGGGGACAAGAGGTATGAGTTGGGGGGAGGAGGA
AAGGGAGGAGGAAGGGGGGGAGGGAGTGATGTGTCGATTGCCATCAATCC
TGATGAGCTGGTAGATCAGCTGGGCGATGAAGAGGCGCTCAAGGAGAGGT
ACGAGCAGGAGGTGGAGGCAAGGCAGACGGCGAAGCGACTGGCGGATGAC
GATAGTGACGAGGAGGGAGGAGGAGTGGGTGGAAGGGGGGGAGGAAGGAA
GAAGCGGAAGGCGGAGAAGGCGGGAGGGGGAGCAGGGGGGGTAAAGAAGA
GTAAGGAATTCAAATTTTAAGGATTTCAAAATTAAAAGGGAGGGGCACAT
GAGTAGGTCTTGTTATATACGTTGGGGGCGGAGGTAGGTAGAGGGAGACA
AGGGGAGTAGTGGAGGGGAAAGTGGGGGAGAGAGCGAATCCCTCTCAGGC
TAGTGACGAGAAGTAGTGAAGAACCAAGACAGGAAAGCTGATCAGCATCG
GACGAGAAAAGCGTGTAGTTTCCACACGCCCATTTGCGTACTTATTTCCT
CCCCCACACACAGATCAAACTTAAATTGAAGGGAAACTTTAACATTTCCA
CCCATTGGAAAAAGAACACCAAAAGAAATAAAACAAGGCAGTTTCTCGTC
TCGCC back to topCoding sequence (CDS) from alignment at chr9:173800..176604- >NO09G00380.1 ID=NO09G00380.1|Name=NO09G00380.1|organism=Nannochloropsis oceanica|type=CDS|length=1830bp|location=Sequence derived from alignment at chr9:173800..176604- (Nannochloropsis oceanica)
ATGTCGGACGACGAGTACGACCACCAAGGTCAAAACGGCACCTCCCAGGC
AAATGGGAAGCCGGCTGGTAAGCTCTCCAAGAACCAAAGAAAAAGAGAAA
AGAAGAAGGTTGCGAAGCAGGCGGCCAAGATGGAAGAAGGGGCCTCCACC
AACGGCAGCAGTAGCGCGCCCTCCTCCGCTCCTTCACATCCCCCTTCCAC
TCCTCGAGTGGAGATCGAGTATGTTTCGGCGGACCTAGAGAGCGAGCTAT
CGGCTGTGGGGGACGATCCCGTCCTGGATGAGTTCAAAGAGATTTTCAAG
AAGTTTTCGACCGCGGAAGAATTGTGTGGAACCGCTGAAGGGGAGGAGGA
GGAAGGCGAGGAGGACGAGGACGAGGAGGGGGGTAAGAAGAAGAAGAAGG
CTGGTGCCGGAGGCGTTGATGGCGACAGTAGTGACGAGGAGGGGGATGAA
GAGCGGGGGGCCCGTCTTTCGCGGAAGCAGCGGAAAAAGCTTAATCGGTT
GTCGGTCGCGGAACTGAAGCAACTCGTGGCGCGGCCCGATGTGGTGGAGG
CCCACGACGTGACCTCCCAAGACCCCCAGCTGTTGGTCCACATCAAGGCC
TACCGCAATACCGTCCCCGTCCCCCGGCACTGGTGCCACAAACGCAAGTA
CCTCACCGGCAAACGTGGCATCGAAAAAGCGCCGTTTGACCTTCCTGAGT
TCATCAAGGCCACAGGCATCCAAAAACAACGCGAGGCTATGGAAGAGAAG
CTCTCCCTGCAAACTTCCCGTCAAAAAATGCGCGAACGCGTGAACCCCAA
AATGGGTCGCATGGACATTGATTACGCCATTCTCGAGGATGCCTTTCTCC
GGTACCAGACCAAGCCCTCCCTCACCTCCCACGGCGACCTCTATTACGAG
GGCAAAGAGTTTGAAACCCACACTAAGAACTACACCCCCGGCCAACTCTC
CTCCGCCCTCATCGAGGCCCTGAGCATTCCCCCCCTCTACCCTCCCCCGT
GGCTCATGAACATGCAGCGATATGGACCGCCGCCGTCTTATCCGGCGTTG
CGGATTCCAGGGCTGAATGCCCCCTTGCCGGAGGGGGCGAGTTATGGCAT
GCATCCCGGTGGGTGGGGGAAGCCTCCCGTGGATGAGTACGGACGACCGC
TGTATGGTGACGTATTTGGAGTGCTGGGGGAGGGAGGGACGGAGGGGAGG
ATGGGTGGCATGGGAGGCGGCGAAGAAGTGAACAGGAAGCATTGGGGAGA
GGTAGAATATGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAAGAGG
AGAGTGAGGGGGAGGAAGGGGAAGAATATGGGGGAGGGATGGAGACGCCG
ATGACGGATGGAACGGGTTTGAGTAGTGTGGTGAGCGGGTTGGCGACGCC
GGCGGAGGGAGGGATTGAGTTGAGGAAGAAGGGAGGGTTAGAGACGCCGA
GTGAAGGGCCAAGGGAGCTTTACAAGGTGCTTGAGCAGAAAGAGAGGGGG
GAGGGCGGGGGAGGAGGGTTTTTCGGGGGGGACAAGAGGTATGAGTTGGG
GGGAGGAGGAAAGGGAGGAGGAAGGGGGGGAGGGAGTGATGTGTCGATTG
CCATCAATCCTGATGAGCTGGTAGATCAGCTGGGCGATGAAGAGGCGCTC
AAGGAGAGGTACGAGCAGGAGGTGGAGGCAAGGCAGACGGCGAAGCGACT
GGCGGATGACGATAGTGACGAGGAGGGAGGAGGAGTGGGTGGAAGGGGGG
GAGGAAGGAAGAAGCGGAAGGCGGAGAAGGCGGGAGGGGGAGCAGGGGGG
GTAAAGAAGAGTAAGGAATTCAAATTTTAA back to top
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