NO09G00170.1, NO09G00170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00170.1
Unique NameNO09G00170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1215
Alignment locationchr9:93899..95676 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:93899..95676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00170.1 vs.
Match: GBG33319.1 (E3 ubiquitin-protein ligase TRIP12 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 133.7 bits (335), Expect = 1.300e-27
Identity = 112/314 (35.67%), Postives = 157/314 (50.00%), Query Frame = 0 
Query:  116 SFLSSSFSTTIILSTFRFLGRLIGKAFQENRLLSLPLSLPLCKLLVGHPLILADVGLVDPQLGRCLAEIESMVVRADAEEE-----AEEENEKEKMEEEWKDEGLLLSTPTGSTSSSFSSVRSIITTTTATTKKKKQPHLQEQQQPQPPHQPRQQQQQHRHRLSEYLEALSLDFTLPGYP*ASRPAVCGGGEEEEEEWTEERIGNSLVCKHGYHRSAPQIQWLVRVLASLEREERKKFLMFVCGTPRLPIGGFAALRPLLTV--------------------VYLKLPAYSSEEVLREKLKQAMTLGQEHFALD 405
            S L +  S   +L+ F F+GR IGKA Q+ RLL LPLS+PLCKLL+G  L L+D GLVD  LG+    ++ +   ADA  +      EE+ + E  E E    G+ +      T+     V      + + T    Q +L    +        +Q +  R  +S +    +L    P        ++   G ++   W  E I  ++VCKHGY   A QI+ LV VL+ L+  +R+ F+ F+ G+PRLP+GGF  LRP LTV                    VYLKLP YSS EVL+ +L QA+  GQ HFALD
Sbjct: 2492 SILEAEHSRERVLTIFTFVGRFIGKALQDKRLLDLPLSIPLCKLLIGESLKLSDAGLVDETLGKSFQYLQDL---ADAHAQLSARAGEEDADAELCELEDTICGMCIDFTVPGTNGEELVVGG---ASKSVTGANLQEYLDLVCKRILHDDVAEQVRCLREGISAFFPVEALQVFSP----HELQSLLSDG-DDGANWDAEVIMANIVCKHGYDARARQIRDLVHVLSELDGSDRRLFMQFLTGSPRLPVGGFGELRPRLTVVRKNVADDPDGILPSCSTCQVYLKLPPYSSREVLKRRLLQAVREGQGHFALD 2794
The following BLAST results are available for this feature:
BLAST of NO09G00170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
GBG33319.11.300e-2735.67E3 ubiquitin-protein ligase TRIP12 [Aurantiochytri... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00170NO09G00170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00170.1NO09G00170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00170.1.cds1NO09G00170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00170.1.cds2NO09G00170.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00170.1.cds3NO09G00170.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00170.1.cds4NO09G00170.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00170.1 ID=NO09G00170.1|Name=NO09G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1215bp
ATGGAAGAAGAGGAGGAGGGGGAGGAATATGGTGCGGAATCTGCCTTTGC
GAGAGCTCGGCACGCGTATATGCTGATGGGAGGTGGGGGCGGGGGAGGGG
GAGGGGGAGGAAGGGAAGGAGGAGGGGAAGGAGGAAGCTTCCGGGAGGAT
GAGCTGGTGGTGGCGTTTGAGGGGGAGACAGGGCATGGGACGGGACCGAC
GCAGGAGTTTTATTCGTTGGTGTGTAGGGAAGTGACGAGGAAGGGCCTGG
GTGTGTGGAGGGGGGATGAGGTGGGGGCGGTGAAGGAGGAGGCGGAGGGG
GGGGGTAGGGGATCCAAGAATTGCAAAGCCCCCGCCCCCACTTCCTCCTT
CCTGTCCTCCTCTTTCTCCACCACCATCATCCTCTCCACCTTCCGTTTCC
TCGGCCGGCTGATTGGGAAAGCCTTCCAAGAGAACCGGCTGCTCTCCCTC
CCCCTCTCCCTCCCTCTCTGTAAGCTCTTGGTGGGGCATCCATTAATTCT
GGCAGATGTCGGGCTTGTGGACCCCCAACTCGGTCGCTGCTTGGCCGAGA
TCGAGTCCATGGTGGTACGTGCGGATGCGGAGGAGGAGGCGGAGGAGGAG
AATGAGAAGGAGAAGATGGAGGAGGAATGGAAAGATGAAGGGCTGCTGCT
GAGCACGCCTACTGGCTCTACGTCCTCCTCTTTCTCGTCTGTTCGTTCTA
TCATCACCACCACCACCGCCACCACCAAGAAAAAGAAGCAACCACACCTT
CAGGAGCAACAGCAGCCGCAACCCCCACATCAACCCCGACAGCAGCAGCA
GCAGCACCGTCACCGCCTTTCCGAGTACCTTGAGGCCCTCTCCCTCGACT
TCACCCTTCCAGGCTACCCATGAGCTTCGCGCCCTGCTGTGTGCGGAGGG
GGGGAGGAGGAAGAGGAGGAGTGGACCGAGGAGCGGATCGGGAATAGCCT
GGTGTGTAAGCACGGGTATCACCGATCAGCCCCTCAGATACAGTGGCTGG
TCAGGGTGTTGGCATCGTTGGAGAGGGAAGAGAGGAAGAAGTTTTTGATG
TTTGTGTGTGGCACACCCCGTTTGCCTATTGGTGGCTTTGCGGCCTTGAG
GCCGTTACTGACGGTGGTGTACTTAAAGCTGCCTGCATACAGCTCCGAGG
AGGTGCTGCGGGAGAAGTTGAAGCAGGCGATGACGTTGGGACAGGAGCAC
TTTGCCTTAGATTAG
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protein sequence of NO09G00170.1

>NO09G00170.1-protein ID=NO09G00170.1-protein|Name=NO09G00170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MEEEEEGEEYGAESAFARARHAYMLMGGGGGGGGGGGREGGGEGGSFRED
ELVVAFEGETGHGTGPTQEFYSLVCREVTRKGLGVWRGDEVGAVKEEAEG
GGRGSKNCKAPAPTSSFLSSSFSTTIILSTFRFLGRLIGKAFQENRLLSL
PLSLPLCKLLVGHPLILADVGLVDPQLGRCLAEIESMVVRADAEEEAEEE
NEKEKMEEEWKDEGLLLSTPTGSTSSSFSSVRSIITTTTATTKKKKQPHL
QEQQQPQPPHQPRQQQQQHRHRLSEYLEALSLDFTLPGYP*ASRPAVCGG
GEEEEEEWTEERIGNSLVCKHGYHRSAPQIQWLVRVLASLEREERKKFLM
FVCGTPRLPIGGFAALRPLLTVVYLKLPAYSSEEVLREKLKQAMTLGQEH
FALD*
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mRNA from alignment at chr9:93899..95676+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00170.1 ID=NO09G00170.1|Name=NO09G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1778bp|location=Sequence derived from alignment at chr9:93899..95676+ (Nannochloropsis oceanica)
ATGGAAGAAGAGGAGGAGGGGGAGGAATATGGTGCGGAATCTGCCTTTGC
GAGAGCTCGGCACGCGTATATGCTGATGGGAGGTGGGGGCGGGGGAGGGG
GAGGGGGAGGAAGGGAAGGAGGAGGGGAAGGAGGAAGCTTCCGGGAGGAT
GAGCTGGTGGTGGCGTTTGAGGGGGAGACAGGGCATGGGACGGGACCGAC
GCAGGAGTTTTATTCGTTGGTGTGTAGGGAAGTGACGAGGAAGGGCCTGG
GTGTGTGGAGGGGGGATGAGGTGGGGGCGGTGAAGGAGGAGGCGGAGGGG
GGGGGTAGGGGGTAGGGAGGGAGGACGGAAGAGGGGGCAGGGAGGAGATA
GAAAGAAGCGAAGGAAGAGGGAAAAGGAGACGGGAGATTTCTCATGGAAG
GAAGAGGGGAAGGAGCAAGGACAGGGAGGGAGGAAGGAGGGAAAAGAGGA
GGAAGAGAAGGAGGGGGAGGAGCCACTCTACATTCCTGTGGGTGTAGGGG
GTCTGTTCCCTCGTGTCCTTCCTCCCTCTCCCCCTTCCCATCCCCTCCCC
CCTCTTCCATCGAAGCAGGCACAACGGAATAGCAATAGATCCAAGAATTG
CAAAGCCCCCGCCCCCACTTCCTCCTTCCTGTCCTCCTCTTTCTCCACCA
CCATCATCCTCTCCACCTTCCGTTTCCTCGGCCGGCTGATTGGGAAAGCC
TTCCAAGAGAACCGGCTGCTCTCCCTCCCCCTCTCCCTCCCTCTCTGTAA
GCTCTTGGTGGGGCATCCATTAATTCTGGCAGATGTCGGGCTTGTGGACC
CCCAACTCGGTCGCTGCTTGGCCGAGATCGAGTCCATGGTGGTACGTGCG
GATGCGGAGGAGGAGGCGGAGGAGGAGAATGAGAAGGAGAAGATGGAGGA
GGAATGGAAAGATGAAGGGCTGCTGCTGAGCACGCCTACTGGCTCTACGT
CCTCCTCTTTCTCGTCTGTTCGTTCTATCATCACCACCACCACCGCCACC
ACCAAGAAAAAGAAGCAACCACACCTTCAGGAGCAACAGCAGCCGCAACC
CCCACATCAACCCCGACAGCAGCAGCAGCAGCACCGTCACCGCCTTTCCG
AGTACCTTGAGGCCCTCTCCCTCGACTTCACCCTTCCAGGCTACCCATGG
TATGAGCTGCGGGAGGGAGGGAAGGAGGAGACGGTCGACAGCACGAACGT
ACGGGTGTACCTCAATCTGGTCACGCGGCATTTCCTAATTGAGAGCATTC
AGCCCTCCCTCAAGGCACTGAAAGAGGGATTGCTTGACGTCCTCCGCCCC
CCCCTTACCCGGTCTCTCGCCCTCTTCTCCCCCATAGAGCTTCGCGCCCT
GCTGTGTGCGGAGGGGGGGAGGAGGAAGAGGAGGAGTGGACCGAGGAGCG
GATCGGGAATAGCCTGGTGTGTAAGCACGGGTATCACCGATCAGCCCCTC
AGATACAGTGGCTGGTCAGGGTGTTGGCATCGTTGGAGAGGGAAGAGAGG
AAGAAGTTTTTGATGTTTGTGTGTGGCACACCCCGTTTGCCTATTGGTGG
CTTTGCGGCCTTGAGGCCGTTACTGACGGTGGTGAGAAAAGAGGTCCCCT
CGACGGGTGGGAGGGGGAAAAGAGGGAGGGGGGGGCGTTGGCAGCAGACT
TGTACTTACCGAGCTGTAGCACGTGTCAGGTGTACTTAAAGCTGCCTGCA
TACAGCTCCGAGGAGGTGCTGCGGGAGAAGTTGAAGCAGGCGATGACGTT
GGGACAGGAGCACTTTGCCTTAGATTAG
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Coding sequence (CDS) from alignment at chr9:93899..95676+

>NO09G00170.1 ID=NO09G00170.1|Name=NO09G00170.1|organism=Nannochloropsis oceanica|type=CDS|length=1215bp|location=Sequence derived from alignment at chr9:93899..95676+ (Nannochloropsis oceanica)
ATGGAAGAAGAGGAGGAGGGGGAGGAATATGGTGCGGAATCTGCCTTTGC
GAGAGCTCGGCACGCGTATATGCTGATGGGAGGTGGGGGCGGGGGAGGGG
GAGGGGGAGGAAGGGAAGGAGGAGGGGAAGGAGGAAGCTTCCGGGAGGAT
GAGCTGGTGGTGGCGTTTGAGGGGGAGACAGGGCATGGGACGGGACCGAC
GCAGGAGTTTTATTCGTTGGTGTGTAGGGAAGTGACGAGGAAGGGCCTGG
GTGTGTGGAGGGGGGATGAGGTGGGGGCGGTGAAGGAGGAGGCGGAGGGG
GGGGGTAGGGGATCCAAGAATTGCAAAGCCCCCGCCCCCACTTCCTCCTT
CCTGTCCTCCTCTTTCTCCACCACCATCATCCTCTCCACCTTCCGTTTCC
TCGGCCGGCTGATTGGGAAAGCCTTCCAAGAGAACCGGCTGCTCTCCCTC
CCCCTCTCCCTCCCTCTCTGTAAGCTCTTGGTGGGGCATCCATTAATTCT
GGCAGATGTCGGGCTTGTGGACCCCCAACTCGGTCGCTGCTTGGCCGAGA
TCGAGTCCATGGTGGTACGTGCGGATGCGGAGGAGGAGGCGGAGGAGGAG
AATGAGAAGGAGAAGATGGAGGAGGAATGGAAAGATGAAGGGCTGCTGCT
GAGCACGCCTACTGGCTCTACGTCCTCCTCTTTCTCGTCTGTTCGTTCTA
TCATCACCACCACCACCGCCACCACCAAGAAAAAGAAGCAACCACACCTT
CAGGAGCAACAGCAGCCGCAACCCCCACATCAACCCCGACAGCAGCAGCA
GCAGCACCGTCACCGCCTTTCCGAGTACCTTGAGGCCCTCTCCCTCGACT
TCACCCTTCCAGGCTACCCATGAGCTTCGCGCCCTGCTGTGTGCGGAGGG
GGGGAGGAGGAAGAGGAGGAGTGGACCGAGGAGCGGATCGGGAATAGCCT
GGTGTGTAAGCACGGGTATCACCGATCAGCCCCTCAGATACAGTGGCTGG
TCAGGGTGTTGGCATCGTTGGAGAGGGAAGAGAGGAAGAAGTTTTTGATG
TTTGTGTGTGGCACACCCCGTTTGCCTATTGGTGGCTTTGCGGCCTTGAG
GCCGTTACTGACGGTGGTGTACTTAAAGCTGCCTGCATACAGCTCCGAGG
AGGTGCTGCGGGAGAAGTTGAAGCAGGCGATGACGTTGGGACAGGAGCAC
TTTGCCTTAGATTAG
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Synonyms
Publications