NO09G00060.1, NO09G00060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00060.1
Unique NameNO09G00060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2112
Alignment locationchr9:44596..47163 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:44596..47163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00060.1 vs.
Match: GBG28648.1 (DnaJ family protein [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 237.7 bits (605), Expect = 1.100e-58
Identity = 222/693 (32.03%), Postives = 334/693 (48.20%), Query Frame = 0 
Query:    9 QRQQQQQQQQQQQEAAKANGSTLATPPPPTSVSPPSSSFLSHAPRDASEGLAEGLKSIALGVGAGVAGLVGMPLVGAKNEGVSGFFKGLGAGVLGAVVLPTMGVVNGVMEIGGGIANTPESVNARMEGRVWDENQRKWVRYDLREEATRVFKEEKEYEEKEKLERKEKKKGSGKEGG-----------------------VKDLTYYKLLEVETTATAEEIKKAYYKKARGCHPDRHPGDAEAHAKFQALSHAYHILSSDPLRAAYDREGAEAAGLEESMPSLDPALFFTVLFGSEKFEPYVGRLKLSHFVTAFGESLAEGVKKEGEGGGEEGKEGKEAQLPDLSAAWDGGEKARMMQTAREVRCALHLIQCLAPYVAAGAAGEGGNEGGEVGMEGFHRWMVDEAAGLCQGTFGPQMLLEVGWVYENIGREFLGWKDSWWGVEGVWEKVTREAKGLGRRAEVASAAVGAFKAAKTMSDNMGKAEEEKRLKRGEQKKVEGGKVKAGA-------TPATASPAAAAATATGATATGATTEATATAAVETSSASTTETPATSSSPGVEDTTAATTNAGETAQDEGASDAELAALNESIPAFVHVMWKMSQLDIQKTAAKAAKKVLRDHSVSEGVRRRRAQGLILMGAHFKQVG---KEAMAALKAQGEGGAAAVKLDAKHLEEVMLKTMAVGQGQE 669
            ++ QQQ    +QQ A K + + +A       +      F +  P+D + GL+ GLK++  GV AGVA  V MP++GA+  G SGF KGL  GV+  V LP  GV+ G  ++G G+ NTP+++    EG+ WD  +R+W  YDL EE++RV  E +E   ++K E    + G  KEGG                       VKD TYY LL +E  AT   IKKAYY KAR  HPD++P D +AH +FQ +  AY +LS   LR  YD+ G +     + +P +D + FF ++FGSEKF+ YVG L+L+  +     S+ + V+ E E                + A +         Q  R V+ A++L + L  +V          +        F   M +EA  L    FG  +L  +G+VY     + LG+K S     G  E + R    +  +  VA +A   ++ AK +     + +E+++LK    +  +       A       +  T+S A AAA ATG  ATGAT  A +  A +T            ++ G E++       G  A++E  +D E   + ES    +  +W MS LDI+ T  KA +K+ +D SV   VR  RA+GL +MG  F+  G   +E + A +AQ +    A K   K+ +E   KT +  Q Q+
Sbjct:   36 KQPQQQAAHGEQQLALKTDEALIAQGDEEDDME----IFSTRRPKDVTAGLSSGLKNVGKGVLAGVAAAVSMPVLGARESGASGFAKGLAMGVVAGVSLPVGGVLTGAYQVGRGVFNTPQAIMEAKEGKEWDPVKREWFTYDLEEESSRVLNESEEEFLRKKREGDTGEDGKAKEGGAAGSGAEAKDGESAEEPKLPAKEVKDRTYYDLLGIEPNATPSMIKKAYYVKARKLHPDKNPNDPKAHERFQEVGAAYQVLSDPGLREKYDKYGKDGV---DDVPVMDSSAFFMMIFGSEKFDYYVGELQLATMM-----SMGQDVEGEDEDAA-------------MQALFSNNPAMEFRQRKRIVQTAVNLAKVLQDFVDEALTDPNAPK--------FRAKMTEEAKELSASPFGGTLLSVIGYVYVEQSEKMLGFKHSIGAGLGFTE-MKRRGHVMATKYRVARSAYRTYRVAKKI-----EKKEQEKLKNKTPRDPDASPTSPDASGNAESKSDKTSSAAGAAAEATG--ATGATAGAPSAPAADT------------AANGAEESAKKKPTEGADAEEEVQTDDE-EGMAESFMGMIETLWNMSVLDIESTLRKACRKIFKDASVKLEVRILRARGLEIMGRIFQASGISAEEGLGAFQAQMKEQMDAAKTAQKYHQEQEAKTASQEQQQQ 674
The following BLAST results are available for this feature:
BLAST of NO09G00060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
GBG28648.11.100e-5832.03DnaJ family protein [Aurantiochytrium sp. FCC1311][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00060NO09G00060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00060.1NO09G00060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00060.1.cds1NO09G00060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00060.1.cds2NO09G00060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00060.1.cds3NO09G00060.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00060.1.cds4NO09G00060.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00060.1 ID=NO09G00060.1|Name=NO09G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2112bp
ATGGAGCAGCAGCAGCAAGAGCGGCAAAGGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGGAGGCAGCCAAGGCCAACGGCAGTACCCTGGCAACCC
CACCTCCGCCCACCTCAGTCTCCCCTCCCTCCTCCTCCTTCCTCTCCCAC
GCGCCCCGCGACGCCTCTGAAGGCCTCGCGGAAGGGCTCAAGTCCATCGC
CCTTGGCGTGGGAGCGGGTGTGGCGGGTTTAGTAGGCATGCCGCTGGTAG
GAGCGAAGAATGAGGGAGTCTCTGGTTTTTTCAAGGGCCTAGGCGCGGGT
GTATTGGGTGCCGTGGTGTTGCCGACGATGGGGGTGGTGAATGGCGTGAT
GGAGATTGGGGGGGGGATTGCCAATACGCCTGAGAGCGTCAACGCAAGGA
TGGAAGGACGCGTGTGGGACGAAAACCAACGGAAATGGGTGCGGTACGAT
TTGAGAGAAGAGGCCACACGCGTGTTTAAGGAGGAGAAGGAGTACGAGGA
GAAGGAGAAGCTGGAGCGGAAGGAGAAGAAGAAGGGGAGCGGAAAGGAGG
GAGGAGTGAAGGATCTCACCTACTATAAGCTACTGGAGGTAGAGACGACG
GCGACGGCGGAGGAGATCAAGAAGGCTTACTACAAGAAGGCACGGGGCTG
CCACCCTGACCGGCACCCGGGCGATGCCGAGGCGCATGCCAAATTCCAGG
CATTGTCGCACGCCTACCACATCCTCTCGTCCGACCCTCTTCGTGCCGCC
TACGATAGGGAGGGGGCCGAAGCCGCGGGACTGGAGGAGAGCATGCCTTC
CCTGGACCCGGCCCTATTTTTCACGGTGTTGTTTGGGAGTGAGAAGTTTG
AGCCTTATGTGGGGAGGTTGAAGCTGTCGCATTTCGTCACGGCCTTTGGG
GAGTCGCTAGCGGAGGGTGTGAAAAAGGAGGGCGAGGGAGGGGGCGAGGA
AGGGAAGGAGGGGAAGGAGGCCCAGCTGCCAGATTTAAGTGCTGCCTGGG
ATGGGGGGGAAAAGGCGCGAATGATGCAGACAGCGAGAGAGGTGAGGTGC
GCCCTGCATTTAATCCAGTGCCTGGCACCGTACGTGGCGGCGGGGGCGGC
GGGAGAGGGCGGGAACGAGGGAGGGGAGGTGGGGATGGAGGGGTTCCACC
GTTGGATGGTGGACGAGGCGGCGGGATTGTGTCAGGGGACGTTCGGGCCA
CAGATGCTGTTGGAAGTAGGATGGGTGTACGAGAACATCGGCCGGGAGTT
CTTAGGATGGAAGGACTCGTGGTGGGGGGTGGAGGGAGTGTGGGAGAAAG
TGACGCGGGAGGCCAAGGGGCTGGGGAGGAGGGCGGAGGTGGCGTCGGCG
GCCGTTGGGGCGTTTAAGGCGGCTAAGACCATGAGCGACAACATGGGCAA
GGCCGAAGAGGAAAAGCGTCTGAAGCGGGGGGAGCAGAAGAAGGTGGAGG
GAGGGAAGGTGAAGGCTGGGGCCACGCCAGCGACGGCGAGTCCAGCAGCA
GCAGCAGCAACGGCAACCGGAGCAACGGCAACAGGAGCAACAACAGAAGC
AACAGCAACAGCAGCAGTAGAAACGAGCAGCGCAAGTACCACGGAGACCC
CCGCCACGTCTTCTTCGCCCGGGGTAGAGGATACCACCGCCGCCACCACC
AATGCGGGGGAGACTGCGCAAGACGAAGGAGCCTCCGATGCGGAGCTTGC
CGCCCTGAACGAAAGTATCCCTGCCTTTGTCCACGTGATGTGGAAGATGA
GTCAGTTGGACATTCAGAAGACGGCCGCGAAAGCCGCTAAGAAGGTTTTG
CGGGACCATTCCGTGTCTGAGGGGGTGCGAAGACGGCGTGCACAGGGGTT
GATTTTGATGGGCGCGCATTTCAAGCAGGTCGGCAAGGAGGCCATGGCGG
CGCTCAAGGCCCAGGGGGAGGGAGGGGCGGCCGCGGTGAAACTGGATGCC
AAGCACTTGGAGGAGGTGATGCTCAAGACGATGGCGGTGGGGCAGGGGCA
GGAGGTGTAGATTGGGGATGGCGGAGTTGTACTTTTGGGGGTGTGGGAGG
AAATAAAACAAAAAAGACAGGATGGACAAAGCACATCGAAACATGTGCGG
AGTGTGGGGACT
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protein sequence of NO09G00060.1

>NO09G00060.1-protein ID=NO09G00060.1-protein|Name=NO09G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=670bp
MEQQQQERQRQQQQQQQQQQQEAAKANGSTLATPPPPTSVSPPSSSFLSH
APRDASEGLAEGLKSIALGVGAGVAGLVGMPLVGAKNEGVSGFFKGLGAG
VLGAVVLPTMGVVNGVMEIGGGIANTPESVNARMEGRVWDENQRKWVRYD
LREEATRVFKEEKEYEEKEKLERKEKKKGSGKEGGVKDLTYYKLLEVETT
ATAEEIKKAYYKKARGCHPDRHPGDAEAHAKFQALSHAYHILSSDPLRAA
YDREGAEAAGLEESMPSLDPALFFTVLFGSEKFEPYVGRLKLSHFVTAFG
ESLAEGVKKEGEGGGEEGKEGKEAQLPDLSAAWDGGEKARMMQTAREVRC
ALHLIQCLAPYVAAGAAGEGGNEGGEVGMEGFHRWMVDEAAGLCQGTFGP
QMLLEVGWVYENIGREFLGWKDSWWGVEGVWEKVTREAKGLGRRAEVASA
AVGAFKAAKTMSDNMGKAEEEKRLKRGEQKKVEGGKVKAGATPATASPAA
AAATATGATATGATTEATATAAVETSSASTTETPATSSSPGVEDTTAATT
NAGETAQDEGASDAELAALNESIPAFVHVMWKMSQLDIQKTAAKAAKKVL
RDHSVSEGVRRRRAQGLILMGAHFKQVGKEAMAALKAQGEGGAAAVKLDA
KHLEEVMLKTMAVGQGQEV*
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mRNA from alignment at chr9:44596..47163+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00060.1 ID=NO09G00060.1|Name=NO09G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2568bp|location=Sequence derived from alignment at chr9:44596..47163+ (Nannochloropsis oceanica)
ATGGAGCAGCAGCAGCAAGAGCGGCAAAGGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGGAGGCAGCCAAGGCCAACGGCAGTAGTAAGTCCCCCT
TTCTTCCTCCCCTTCCCTCTTGGAGCATAACGCATGCACACGACACACCT
ATCCCTCCTCATTTCAATACCATTATTTGCTCCACACGTGTGTGCGTATA
CTTTCATTCATCTTGATGCTCTCGCACTGCCCCAATACTCCCAAATACAG
CCCTGGCAACCCCACCTCCGCCCACCTCAGTCTCCCCTCCCTCCTCCTCC
TTCCTCTCCCACGCGCCCCGCGACGCCTCTGAAGGCCTCGCGGAAGGGCT
CAAGTCCATCGCCCTTGGCGTGGGAGCGGGTGTGGCGGGTTTAGTAGGCA
TGCCGCTGGTAGGAGCGAAGAATGAGGGAGTCTCTGGTTTTTTCAAGGGC
CTAGGCGCGGGTGTATTGGGTGCCGTGGTGTTGCCGACGATGGGGGTGGT
GAATGGCGTGATGGAGATTGGGGGGGGGATTGCCAATACGCCTGAGGTGA
GGATGAGGAGGAGGGATGAATTGGAGGGGGGAAGGGAAGGGAATTGGATT
TAGCGGGCACTTATCTTGGTGGCTGAGGATTTAGTCAACACGAAGGTTCA
CCCTCCCTCCTTCCCTCCTTCCCTCCCCCTCCCTCCTTCCCTCTACCTAC
AGAGCGTCAACGCAAGGATGGAAGGACGCGTGTGGGACGAAAACCAACGG
AAATGGGTGCGGTACGATTTGAGAGAAGAGGCCACACGCGTGTTTAAGGA
GGAGAAGGAGTACGAGGAGAAGGAGAAGCTGGAGCGGAAGGAGAAGAAGA
AGGGGAGCGGAAAGGAGGGAGGAGTGAAGGATCTCACCTACTATAAGCTA
CTGGAGGTAGAGACGACGGCGACGGCGGAGGAGATCAAGAAGGCTTACTA
CAAGAAGGCACGGGGCTGCCACCCTGACCGGCACCCGGGCGATGCCGAGG
CGCATGGTGAGGAAGGAAACGAGTGTTGGGGGTGCAGGGAGGGGGGACGG
GGGGGGTGTTTCCTTGATCTGTTGTACAATCAGCTCTTCCTTTCCAAGTT
CCCAACTAATCGCCCCTTCCCCCCTCTATATTTCGTCTTCATAGCCAAAT
TCCAGGCATTGTCGCACGCCTACCACATCCTCTCGTCCGACCCTCTTCGT
GCCGCCTACGATAGGGAGGGGGCCGAAGCCGCGGGACTGGAGGAGAGCAT
GCCTTCCCTGGACCCGGCCCTATTTTTCACGGTGTTGTTTGGGAGTGAGA
AGTTTGAGCCTTATGTGGGGAGGTTGAAGCTGTCGCATTTCGTCACGGCC
TTTGGGGAGTCGCTAGCGGAGGGTGTGAAAAAGGAGGGCGAGGGAGGGGG
CGAGGAAGGGAAGGAGGGGAAGGAGGCCCAGCTGCCAGATTTAAGTGCTG
CCTGGGATGGGGGGGAAAAGGCGCGAATGATGCAGACAGCGAGAGAGGTG
AGGTGCGCCCTGCATTTAATCCAGTGCCTGGCACCGTACGTGGCGGCGGG
GGCGGCGGGAGAGGGCGGGAACGAGGGAGGGGAGGTGGGGATGGAGGGGT
TCCACCGTTGGATGGTGGACGAGGCGGCGGGATTGTGTCAGGGGACGTTC
GGGCCACAGATGCTGTTGGAAGTAGGATGGGTGTACGAGAACATCGGCCG
GGAGTTCTTAGGATGGAAGGACTCGTGGTGGGGGGTGGAGGGAGTGTGGG
AGAAAGTGACGCGGGAGGCCAAGGGGCTGGGGAGGAGGGCGGAGGTGGCG
TCGGCGGCCGTTGGGGCGTTTAAGGCGGCTAAGACCATGAGCGACAACAT
GGGCAAGGCCGAAGAGGAAAAGCGTCTGAAGCGGGGGGAGCAGAAGAAGG
TGGAGGGAGGGAAGGTGAAGGCTGGGGCCACGCCAGCGACGGCGAGTCCA
GCAGCAGCAGCAGCAACGGCAACCGGAGCAACGGCAACAGGAGCAACAAC
AGAAGCAACAGCAACAGCAGCAGTAGAAACGAGCAGCGCAAGTACCACGG
AGACCCCCGCCACGTCTTCTTCGCCCGGGGTAGAGGATACCACCGCCGCC
ACCACCAATGCGGGGGAGACTGCGCAAGACGAAGGAGCCTCCGATGCGGA
GCTTGCCGCCCTGAACGAAAGTATCCCTGCCTTTGTCCACGTGATGTGGA
AGATGAGTCAGTTGGACATTCAGAAGACGGCCGCGAAAGCCGCTAAGAAG
GTTTTGCGGGACCATTCCGTGTCTGAGGGGGTGCGAAGACGGCGTGCACA
GGGGTTGATTTTGATGGGCGCGCATTTCAAGCAGGTCGGCAAGGAGGCCA
TGGCGGCGCTCAAGGCCCAGGGGGAGGGAGGGGCGGCCGCGGTGAAACTG
GATGCCAAGCACTTGGAGGAGGTGATGCTCAAGACGATGGCGGTGGGGCA
GGGGCAGGAGGTGTAGATTGGGGATGGCGGAGTTGTACTTTTGGGGGTGT
GGGAGGAAATAAAACAAAAAAGACAGGATGGACAAAGCACATCGAAACAT
GTGCGGAGTGTGGGGACT
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Coding sequence (CDS) from alignment at chr9:44596..47163+

>NO09G00060.1 ID=NO09G00060.1|Name=NO09G00060.1|organism=Nannochloropsis oceanica|type=CDS|length=2010bp|location=Sequence derived from alignment at chr9:44596..47163+ (Nannochloropsis oceanica)
ATGGAGCAGCAGCAGCAAGAGCGGCAAAGGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGGAGGCAGCCAAGGCCAACGGCAGTACCCTGGCAACCC
CACCTCCGCCCACCTCAGTCTCCCCTCCCTCCTCCTCCTTCCTCTCCCAC
GCGCCCCGCGACGCCTCTGAAGGCCTCGCGGAAGGGCTCAAGTCCATCGC
CCTTGGCGTGGGAGCGGGTGTGGCGGGTTTAGTAGGCATGCCGCTGGTAG
GAGCGAAGAATGAGGGAGTCTCTGGTTTTTTCAAGGGCCTAGGCGCGGGT
GTATTGGGTGCCGTGGTGTTGCCGACGATGGGGGTGGTGAATGGCGTGAT
GGAGATTGGGGGGGGGATTGCCAATACGCCTGAGAGCGTCAACGCAAGGA
TGGAAGGACGCGTGTGGGACGAAAACCAACGGAAATGGGTGCGGTACGAT
TTGAGAGAAGAGGCCACACGCGTGTTTAAGGAGGAGAAGGAGTACGAGGA
GAAGGAGAAGCTGGAGCGGAAGGAGAAGAAGAAGGGGAGCGGAAAGGAGG
GAGGAGTGAAGGATCTCACCTACTATAAGCTACTGGAGGTAGAGACGACG
GCGACGGCGGAGGAGATCAAGAAGGCTTACTACAAGAAGGCACGGGGCTG
CCACCCTGACCGGCACCCGGGCGATGCCGAGGCGCATGCCAAATTCCAGG
CATTGTCGCACGCCTACCACATCCTCTCGTCCGACCCTCTTCGTGCCGCC
TACGATAGGGAGGGGGCCGAAGCCGCGGGACTGGAGGAGAGCATGCCTTC
CCTGGACCCGGCCCTATTTTTCACGGTGTTGTTTGGGAGTGAGAAGTTTG
AGCCTTATGTGGGGAGGTTGAAGCTGTCGCATTTCGTCACGGCCTTTGGG
GAGTCGCTAGCGGAGGGTGTGAAAAAGGAGGGCGAGGGAGGGGGCGAGGA
AGGGAAGGAGGGGAAGGAGGCCCAGCTGCCAGATTTAAGTGCTGCCTGGG
ATGGGGGGGAAAAGGCGCGAATGATGCAGACAGCGAGAGAGGTGAGGTGC
GCCCTGCATTTAATCCAGTGCCTGGCACCGTACGTGGCGGCGGGGGCGGC
GGGAGAGGGCGGGAACGAGGGAGGGGAGGTGGGGATGGAGGGGTTCCACC
GTTGGATGGTGGACGAGGCGGCGGGATTGTGTCAGGGGACGTTCGGGCCA
CAGATGCTGTTGGAAGTAGGATGGGTGTACGAGAACATCGGCCGGGAGTT
CTTAGGATGGAAGGACTCGTGGTGGGGGGTGGAGGGAGTGTGGGAGAAAG
TGACGCGGGAGGCCAAGGGGCTGGGGAGGAGGGCGGAGGTGGCGTCGGCG
GCCGTTGGGGCGTTTAAGGCGGCTAAGACCATGAGCGACAACATGGGCAA
GGCCGAAGAGGAAAAGCGTCTGAAGCGGGGGGAGCAGAAGAAGGTGGAGG
GAGGGAAGGTGAAGGCTGGGGCCACGCCAGCGACGGCGAGTCCAGCAGCA
GCAGCAGCAACGGCAACCGGAGCAACGGCAACAGGAGCAACAACAGAAGC
AACAGCAACAGCAGCAGTAGAAACGAGCAGCGCAAGTACCACGGAGACCC
CCGCCACGTCTTCTTCGCCCGGGGTAGAGGATACCACCGCCGCCACCACC
AATGCGGGGGAGACTGCGCAAGACGAAGGAGCCTCCGATGCGGAGCTTGC
CGCCCTGAACGAAAGTATCCCTGCCTTTGTCCACGTGATGTGGAAGATGA
GTCAGTTGGACATTCAGAAGACGGCCGCGAAAGCCGCTAAGAAGGTTTTG
CGGGACCATTCCGTGTCTGAGGGGGTGCGAAGACGGCGTGCACAGGGGTT
GATTTTGATGGGCGCGCATTTCAAGCAGGTCGGCAAGGAGGCCATGGCGG
CGCTCAAGGCCCAGGGGGAGGGAGGGGCGGCCGCGGTGAAACTGGATGCC
AAGCACTTGGAGGAGGTGATGCTCAAGACGATGGCGGTGGGGCAGGGGCA
GGAGGTGTAG
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Synonyms
Publications