NO09G00040.1, NO09G00040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00040.1
Unique NameNO09G00040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1215
Alignment locationchr9:12117..15225 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:12117..15225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G00040.1 vs.
Match: CBJ27235.1 (Chlorophyll synthase, putative chloroplast precursor [Ectocarpus siliculosus])

HSP 1 Score: 506.5 bits (1303), Expect = 7.500e-140
Identity = 254/402 (63.18%), Postives = 299/402 (74.38%), Query Frame = 0
Query:   18 FLLPSLPQTRTVTRSSSFLRMALPSLNEEKPASFYPFETS--------------LGM----KGKGKKDNSEVGSNTARQLLGMKGAAETDDLLKIRIQLMKPVTWIPLIWGVVCGAAASGNYHWANPLDQANPDAVPLSLGLEDAAKAVTCMLLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISEGQVKGQIWGLLLAGLGLAGVLDLWAGHTEPTILGLSALGSFISYIYSAPPLKLKQSGWIGNYALGCSYISLPWWCGQAMFGTLNAQVVVLTILYSLAGLGIAIVNDFKSIEGDRAMGLNSLPVAFGIDTAKWICVGTIDVTQLGVAGYLAYIGETTYALALLGLILPQIFFQFKYFLKDPIKYDVKYQASAQPFLVLGILTTALAVGHHDF 402
            F +P+LP  R    ++    ++  S  ++KP SFYPF+ S               G+    + KG     E      RQL+G+KGA+ TD++LKIR+QL KPVTWIPLIWGV+CGAAASGNYHW NP    +   V   LG +D  KA+ CM+L+GP LTG+TQTINDWYD+DIDAINEPYRPIPSG ISE QV  QIW LLL GL +A  LD+WAGH  P +  LS  GSFISYIYSAPP+KLKQ+GW+GNYALG SYISLPWWCGQAMFG LN QVV+LT+LYS AGLGIAIVNDFKS+EGDR MGL SLPVAFG++ AKW+CVG+ID TQLG+A +L YIGE TYA  L  L+LPQ+F QFKYFL DP+  DVKYQA+AQPFLV GILTTALA+GHH F
Sbjct:   21 FHVPALPSARATAAANR--HVSRMSTADDKPKSFYPFQRSDAPSTRPGSIPRLEAGVTPTPETKGGTKEGEGAGGAFRQLVGLKGASTTDEILKIRLQLTKPVTWIPLIWGVLCGAAASGNYHWWNPFGGGD---VSFDLGSQDLLKALGCMILSGPFLTGYTQTINDWYDRDIDAINEPYRPIPSGAISEKQVIEQIWFLLLGGLAIAYGLDVWAGHDFPMVFALSVGGSFISYIYSAPPIKLKQNGWLGNYALGSSYISLPWWCGQAMFGELNIQVVILTLLYSWAGLGIAIVNDFKSVEGDREMGLQSLPVAFGVEKAKWLCVGSIDATQLGIAAWLYYIGEPTYAAILTALVLPQVFAQFKYFLPDPVGNDVKYQATAQPFLVFGILTTALAMGHHTF 417          
The following BLAST results are available for this feature:
BLAST of NO09G00040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ27235.17.500e-14063.18Chlorophyll synthase, putative chloroplast precurs... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00040NO09G00040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00040.1NO09G00040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00040.1.cds1NO09G00040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00040.1.cds2NO09G00040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00040.1.cds3NO09G00040.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00040.1.cds4NO09G00040.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00040.1.cds5NO09G00040.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00040.1.cds6NO09G00040.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00040.1.cds7NO09G00040.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00040.1.cds8NO09G00040.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00040.1.cds9NO09G00040.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00040.1.cds10NO09G00040.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00040.1 ID=NO09G00040.1|Name=NO09G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1215bp
ATGCGATTTGCCCTGCCTCTCGTCCTGGCGCCGACTTTGGCTGTCACGGG
CTTCCTCCTTCCCAGCTTGCCTCAGACCCGGACCGTCACCCGCTCCTCCT
CCTTCCTGCGCATGGCCCTCCCGTCCCTGAATGAGGAGAAGCCCGCGTCA
TTCTATCCATTTGAGACGTCATTAGGCATGAAGGGCAAGGGGAAGAAGGA
CAATAGTGAAGTGGGGAGCAACACTGCCAGGCAACTCCTGGGCATGAAAG
GTGCGGCTGAGACGGACGACCTCCTCAAGATTCGCATCCAGCTCATGAAG
CCTGTCACTTGGATCCCTCTCATTTGGGGCGTGGTCTGCGGAGCCGCCGC
CAGTGGCAACTACCACTGGGCCAATCCCCTGGACCAGGCCAATCCGGACG
CCGTCCCTCTTTCCCTCGGCTTGGAGGACGCTGCCAAGGCAGTCACATGT
ATGCTTCTCGCCGGGCCCCTCCTGACCGGTTTTACTCAAACCATTAACGA
CTGGTACGACAAGGACATCGACGCCATCAACGAGCCTTACCGCCCCATCC
CCTCCGGGCGCATCTCCGAGGGCCAAGTGAAGGGGCAAATCTGGGGACTC
CTTCTGGCGGGCCTCGGCCTCGCCGGCGTGCTTGATTTGTGGGCCGGTCA
CACCGAGCCCACGATCCTCGGTCTCTCCGCCCTGGGCTCCTTCATCTCCT
ACATCTACAGCGCGCCGCCACTCAAGTTGAAGCAGAGCGGCTGGATCGGC
AATTACGCGCTCGGGTGTTCTTACATCTCCCTGCCCTGGTGGTGTGGGCA
AGCCATGTTTGGCACTCTCAATGCACAGGTGGTGGTGCTCACCATTCTCT
ACAGTCTGGCCGGGCTCGGCATTGCTATCGTCAACGACTTCAAGTCCATC
GAGGGCGATCGGGCCATGGGCCTTAACTCCCTTCCCGTGGCATTCGGGAT
CGATACTGCCAAATGGATCTGCGTTGGCACCATTGACGTCACCCAGCTCG
GCGTGGCTGGCTACCTGGCCTACATCGGCGAGACCACCTATGCGCTCGCC
CTGCTCGGCCTGATTTTACCCCAAATCTTCTTCCAATTCAAATACTTCTT
GAAGGACCCCATCAAATATGATGTCAAGTATCAGGCGAGCGCACAGCCGT
TCTTGGTGCTGGGCATCCTGACGACGGCGCTGGCAGTGGGCCATCACGAC
TTTTCGGGCATCTAA
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protein sequence of NO09G00040.1

>NO09G00040.1-protein ID=NO09G00040.1-protein|Name=NO09G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MRFALPLVLAPTLAVTGFLLPSLPQTRTVTRSSSFLRMALPSLNEEKPAS
FYPFETSLGMKGKGKKDNSEVGSNTARQLLGMKGAAETDDLLKIRIQLMK
PVTWIPLIWGVVCGAAASGNYHWANPLDQANPDAVPLSLGLEDAAKAVTC
MLLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISEGQVKGQIWGL
LLAGLGLAGVLDLWAGHTEPTILGLSALGSFISYIYSAPPLKLKQSGWIG
NYALGCSYISLPWWCGQAMFGTLNAQVVVLTILYSLAGLGIAIVNDFKSI
EGDRAMGLNSLPVAFGIDTAKWICVGTIDVTQLGVAGYLAYIGETTYALA
LLGLILPQIFFQFKYFLKDPIKYDVKYQASAQPFLVLGILTTALAVGHHD
FSGI*
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mRNA from alignment at chr9:12117..15225-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00040.1 ID=NO09G00040.1|Name=NO09G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=3109bp|location=Sequence derived from alignment at chr9:12117..15225- (Nannochloropsis oceanica)
ATGCGATTTGCCCTGCCTCTCGTCCTGGCGCCGACTTTGGCTGTCACGGG CTTCCTCCTTCCCAGCTTGCCTCAGGTAGGTGGACCTAGGGAGTCGAGCA GCACACGATTTCCTGTACATCCGTCCTTCCAGCCCTGATCATTCGTTCGC TCTACTCAGCCCTGTGTACATCCATCATTTGCACTGTGCTGCGCATGGCG TGCTTCATTTCAAATACCTCCTCCCCTTCCCATCGGTTTCCCTTCCATCC AGACCCGGACCGTCACCCGCTCCTCCTCCTTCCTGCGCATGGCCCTCCCG TCCCTGAATGAGGAGAAGCCCGCGTCATTCTATCCATTTGAGACGTCATT AGGCATGAAGGGCAAGGGGAAGAAGGACAATAGTGAAGTGGGGAGCAACA CTGCCAGGTATGGAGATGAGGGCACACAGGGAGGGGGACGGGAAGGGAGA GTGAGAGGGATGGGTGAAGGAAAGGGAAGATGAAGAAGGAAAGGAATGTA AAGGGGAGGGGAGACCGATGTGGCCTATACACTGTAAGATTCAAGGAAGA ATCCAATCTCGGCTAGACCACATTACCTCGTCATCTTCGTCCTTCCTTCC CGCCCTCCCTCCCTCCCTCCTTGCTTCCTCCTTTCCTTGGTAGGCAACTC CTGGGCATGAAAGGTGCGGCTGAGACGGACGACCTCCTCAAGATTCGCAT CCAGCTCATGAAGCCTGTCACTTGGATCCCTCTCATTTGGGGCGTGGTAC GTTGGAACAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGAATCCTGCATGCCTC CAAAAAGATAATGAGTGTATTCCCCCCCCCTCCCTCCCTCCTTTGCTCTG CGATGGTTCCGTCAGTAAAACCAATCAGTGGCCGAATCCCTTCAATCAAA CCAGCCCGGACGCCATCCCTAAATACTCTTCCTCCTCCCTCTCTCCCTCC TTTCCTCCCTCCCTCCCTCCTTCAGGTCTGCGGAGCCGCCGCCAGTGGCA ACTACCACTGGGCCAATCCCCTGGACCAGGCCAATCCGGACGCCGTCCCT CTTTCCCTCGGCTTGGAGGACGCTGCCAAGGCAGTCACATGTATGGTACG TCCCTCCCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCACCCTCCTTT CCACCCTCCCTCCCTCTCTATCCTCTTTGTTTCTCTATAGCAGCTTTTCC TTTACTCCGCTTATGTGAATGCTGTATCTGAGGCTTCTCTCCTCATCAAG TTCTAGCCCACCCTCATGGGCCTACAGACCGTTGAATCCCGTCGTAACCC TCCCTCCCTCCCTCCCTCCCTCCCCCTCCTCAGCTTCTCGCCGGGCCCCT CCTGACCGGTTTTACTCAAACCATTAACGACTGGTACGACAAGGACATCG ACGCCATCAACGAGCCTTACCGCCCCATCCCCTCCGGGCGCATCTCCGAG GTGTGGGAGGAGAAAGAGACAGAGGAAGGGCGGGAGAAAGAGGGGAAGAA TGAGGGTATTACCCTTGTGTCCAACCCTAACAGAGTCTCACCACTCAATC TCAACCCCACCTCCATTCCCTCCCTCCCTTCCTCCCTCCCTCTTTCCCTC CCTCCCTCCCTCCAGGGCCAAGTGAAGGGGCAAATCTGGGGACTCCTTCT GGCGGGCCTCGGCCTCGCCGGCGTGCTTGATTTGTGGGCCGGTCACACCG AGCCCACGATCCTCGGTCTCTCCGCCCTGGGCTCCTTCATCTCCTACATC TACAGCGCGCCGCCACTCAAGTTGAAGCAGGTGAAGAGAGGGACGAGGGA GGGACAGAGGGAGGATGGGAGGAGGGAAAAGGAGGCTGCCCTTATTTTTT GTTTTCTGCTGCCGCGGTGGGATGAGCACCTACCCTGACACGTTCCTCTC CTTCCCTACCTTCCTACCTACCTACCTACCTACCTGCCTCCCTCCCTCCC TTACAGAGCGGCTGGATCGGCAATTACGCGCTCGGGTGTTCTTACATCTC CCTGCCCTGGTGGTGTGGGCAAGCCATGTTTGGCACTCTCAATGCACAGG TGGTGGTGCTCACCATTCTCTACAGGTAGGTAGAGGGGGAAGAAGAGAGG GAGGAAGAGAGGGAGGGCTGATCTGACCTATCTTTTGTTGCCATTGTAGA GCGCACAAAAGCTATCTCCCAGTCTAATCTTTGCTGCCGCTCCCCCACCT CTCCCTCCCTCTCTTCTTCCCCCCCTCCCTAGTCTGGCCGGGCTCGGCAT TGCTATCGTCAACGACTTCAAGTCCATCGAGGGCGATCGGGCCATGGGCC TTAACTCCCTTCCCGTGGCATTCGGGATCGATACTGCCAAATGGATCTGC GTTGGCACCATTGACGTCACCCAGGTGGATGCCTTCCCTCCCTCCTTCCC TCCCTTCCTCGCTCCCTTCCTCCTTCCCTTTCTCACTCTCATTCGTCTCT AGGAAACTTCTCGAAATTGAAGCGTACCCAAACATATCGAAGCTCACTGA AATCTCGTGTTCTCCTGCTTCCTTCCCCCCCCCCTCATCCTCTCCCCAAA AGCTCGGCGTGGCTGGCTACCTGGCCTACATCGGCGAGACCACCTATGCG CTCGCCCTGCTCGGCCTGATTTTACCCCAAATCTTCTTCCAATTCAAATA CTTCTTGAAGGACCCCATCAAATATGATGTCAAGTATCAGGTGCGTACGT CCCTCCGTCCCTCCCTCTCATTCCTTCCTTCCATTTTTCTGTTCTTGAGG AATATTGTGGTCCATAGGATGTTGTAGGTGTGTGTTCAATCGACACATAG TCTTACAAGCGTATACAGATCTCCTGATGACAAATTTTAGCTGATGGACC TTAGCAAGCCCTCCCTCTTCCTATTCTTTCCTCTGTCCTTCCCTCTCCTT TCCGCGAAACGATTGGTCAAGCACGTACTAATCGCTCCTCTTGACTTGCC CTGCTTCCCTCCTTTGCTTCCTCAATAGGCGAGCGCACAGCCGTTCTTGG TGCTGGGCATCCTGACGACGGCGCTGGCAGTGGGCCATCACGACTTTTCG GGCATCTAA
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Coding sequence (CDS) from alignment at chr9:12117..15225-

>NO09G00040.1 ID=NO09G00040.1|Name=NO09G00040.1|organism=Nannochloropsis oceanica|type=CDS|length=1215bp|location=Sequence derived from alignment at chr9:12117..15225- (Nannochloropsis oceanica)
ATGCGATTTGCCCTGCCTCTCGTCCTGGCGCCGACTTTGGCTGTCACGGG
CTTCCTCCTTCCCAGCTTGCCTCAGACCCGGACCGTCACCCGCTCCTCCT
CCTTCCTGCGCATGGCCCTCCCGTCCCTGAATGAGGAGAAGCCCGCGTCA
TTCTATCCATTTGAGACGTCATTAGGCATGAAGGGCAAGGGGAAGAAGGA
CAATAGTGAAGTGGGGAGCAACACTGCCAGGCAACTCCTGGGCATGAAAG
GTGCGGCTGAGACGGACGACCTCCTCAAGATTCGCATCCAGCTCATGAAG
CCTGTCACTTGGATCCCTCTCATTTGGGGCGTGGTCTGCGGAGCCGCCGC
CAGTGGCAACTACCACTGGGCCAATCCCCTGGACCAGGCCAATCCGGACG
CCGTCCCTCTTTCCCTCGGCTTGGAGGACGCTGCCAAGGCAGTCACATGT
ATGCTTCTCGCCGGGCCCCTCCTGACCGGTTTTACTCAAACCATTAACGA
CTGGTACGACAAGGACATCGACGCCATCAACGAGCCTTACCGCCCCATCC
CCTCCGGGCGCATCTCCGAGGGCCAAGTGAAGGGGCAAATCTGGGGACTC
CTTCTGGCGGGCCTCGGCCTCGCCGGCGTGCTTGATTTGTGGGCCGGTCA
CACCGAGCCCACGATCCTCGGTCTCTCCGCCCTGGGCTCCTTCATCTCCT
ACATCTACAGCGCGCCGCCACTCAAGTTGAAGCAGAGCGGCTGGATCGGC
AATTACGCGCTCGGGTGTTCTTACATCTCCCTGCCCTGGTGGTGTGGGCA
AGCCATGTTTGGCACTCTCAATGCACAGGTGGTGGTGCTCACCATTCTCT
ACAGTCTGGCCGGGCTCGGCATTGCTATCGTCAACGACTTCAAGTCCATC
GAGGGCGATCGGGCCATGGGCCTTAACTCCCTTCCCGTGGCATTCGGGAT
CGATACTGCCAAATGGATCTGCGTTGGCACCATTGACGTCACCCAGCTCG
GCGTGGCTGGCTACCTGGCCTACATCGGCGAGACCACCTATGCGCTCGCC
CTGCTCGGCCTGATTTTACCCCAAATCTTCTTCCAATTCAAATACTTCTT
GAAGGACCCCATCAAATATGATGTCAAGTATCAGGCGAGCGCACAGCCGT
TCTTGGTGCTGGGCATCCTGACGACGGCGCTGGCAGTGGGCCATCACGAC
TTTTCGGGCATCTAA
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Synonyms
Publications