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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:12117..15225 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G00040.1 vs.
Match: CBJ27235.1 (Chlorophyll synthase, putative chloroplast precursor [Ectocarpus siliculosus]) HSP 1 Score: 506.5 bits (1303), Expect = 7.500e-140 Identity = 254/402 (63.18%), Postives = 299/402 (74.38%), Query Frame = 0
Query: 18 FLLPSLPQTRTVTRSSSFLRMALPSLNEEKPASFYPFETS--------------LGM----KGKGKKDNSEVGSNTARQLLGMKGAAETDDLLKIRIQLMKPVTWIPLIWGVVCGAAASGNYHWANPLDQANPDAVPLSLGLEDAAKAVTCMLLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISEGQVKGQIWGLLLAGLGLAGVLDLWAGHTEPTILGLSALGSFISYIYSAPPLKLKQSGWIGNYALGCSYISLPWWCGQAMFGTLNAQVVVLTILYSLAGLGIAIVNDFKSIEGDRAMGLNSLPVAFGIDTAKWICVGTIDVTQLGVAGYLAYIGETTYALALLGLILPQIFFQFKYFLKDPIKYDVKYQASAQPFLVLGILTTALAVGHHDF 402
F +P+LP R ++ ++ S ++KP SFYPF+ S G+ + KG E RQL+G+KGA+ TD++LKIR+QL KPVTWIPLIWGV+CGAAASGNYHW NP + V LG +D KA+ CM+L+GP LTG+TQTINDWYD+DIDAINEPYRPIPSG ISE QV QIW LLL GL +A LD+WAGH P + LS GSFISYIYSAPP+KLKQ+GW+GNYALG SYISLPWWCGQAMFG LN QVV+LT+LYS AGLGIAIVNDFKS+EGDR MGL SLPVAFG++ AKW+CVG+ID TQLG+A +L YIGE TYA L L+LPQ+F QFKYFL DP+ DVKYQA+AQPFLV GILTTALA+GHH F
Sbjct: 21 FHVPALPSARATAAANR--HVSRMSTADDKPKSFYPFQRSDAPSTRPGSIPRLEAGVTPTPETKGGTKEGEGAGGAFRQLVGLKGASTTDEILKIRLQLTKPVTWIPLIWGVLCGAAASGNYHWWNPFGGGD---VSFDLGSQDLLKALGCMILSGPFLTGYTQTINDWYDRDIDAINEPYRPIPSGAISEKQVIEQIWFLLLGGLAIAYGLDVWAGHDFPMVFALSVGGSFISYIYSAPPIKLKQNGWLGNYALGSSYISLPWWCGQAMFGELNIQVVILTLLYSWAGLGIAIVNDFKSVEGDREMGLQSLPVAFGVEKAKWLCVGSIDATQLGIAAWLYYIGEPTYAAILTALVLPQVFAQFKYFLPDPVGNDVKYQATAQPFLVFGILTTALAMGHHTF 417
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G00040.1 ID=NO09G00040.1|Name=NO09G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1215bp ATGCGATTTGCCCTGCCTCTCGTCCTGGCGCCGACTTTGGCTGTCACGGG CTTCCTCCTTCCCAGCTTGCCTCAGACCCGGACCGTCACCCGCTCCTCCT CCTTCCTGCGCATGGCCCTCCCGTCCCTGAATGAGGAGAAGCCCGCGTCA TTCTATCCATTTGAGACGTCATTAGGCATGAAGGGCAAGGGGAAGAAGGA CAATAGTGAAGTGGGGAGCAACACTGCCAGGCAACTCCTGGGCATGAAAG GTGCGGCTGAGACGGACGACCTCCTCAAGATTCGCATCCAGCTCATGAAG CCTGTCACTTGGATCCCTCTCATTTGGGGCGTGGTCTGCGGAGCCGCCGC CAGTGGCAACTACCACTGGGCCAATCCCCTGGACCAGGCCAATCCGGACG CCGTCCCTCTTTCCCTCGGCTTGGAGGACGCTGCCAAGGCAGTCACATGT ATGCTTCTCGCCGGGCCCCTCCTGACCGGTTTTACTCAAACCATTAACGA CTGGTACGACAAGGACATCGACGCCATCAACGAGCCTTACCGCCCCATCC CCTCCGGGCGCATCTCCGAGGGCCAAGTGAAGGGGCAAATCTGGGGACTC CTTCTGGCGGGCCTCGGCCTCGCCGGCGTGCTTGATTTGTGGGCCGGTCA CACCGAGCCCACGATCCTCGGTCTCTCCGCCCTGGGCTCCTTCATCTCCT ACATCTACAGCGCGCCGCCACTCAAGTTGAAGCAGAGCGGCTGGATCGGC AATTACGCGCTCGGGTGTTCTTACATCTCCCTGCCCTGGTGGTGTGGGCA AGCCATGTTTGGCACTCTCAATGCACAGGTGGTGGTGCTCACCATTCTCT ACAGTCTGGCCGGGCTCGGCATTGCTATCGTCAACGACTTCAAGTCCATC GAGGGCGATCGGGCCATGGGCCTTAACTCCCTTCCCGTGGCATTCGGGAT CGATACTGCCAAATGGATCTGCGTTGGCACCATTGACGTCACCCAGCTCG GCGTGGCTGGCTACCTGGCCTACATCGGCGAGACCACCTATGCGCTCGCC CTGCTCGGCCTGATTTTACCCCAAATCTTCTTCCAATTCAAATACTTCTT GAAGGACCCCATCAAATATGATGTCAAGTATCAGGCGAGCGCACAGCCGT TCTTGGTGCTGGGCATCCTGACGACGGCGCTGGCAGTGGGCCATCACGAC TTTTCGGGCATCTAA back to topprotein sequence of NO09G00040.1 >NO09G00040.1-protein ID=NO09G00040.1-protein|Name=NO09G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp MRFALPLVLAPTLAVTGFLLPSLPQTRTVTRSSSFLRMALPSLNEEKPAS FYPFETSLGMKGKGKKDNSEVGSNTARQLLGMKGAAETDDLLKIRIQLMK PVTWIPLIWGVVCGAAASGNYHWANPLDQANPDAVPLSLGLEDAAKAVTC MLLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISEGQVKGQIWGL LLAGLGLAGVLDLWAGHTEPTILGLSALGSFISYIYSAPPLKLKQSGWIG NYALGCSYISLPWWCGQAMFGTLNAQVVVLTILYSLAGLGIAIVNDFKSI EGDRAMGLNSLPVAFGIDTAKWICVGTIDVTQLGVAGYLAYIGETTYALA LLGLILPQIFFQFKYFLKDPIKYDVKYQASAQPFLVLGILTTALAVGHHD FSGI* back to topmRNA from alignment at chr9:12117..15225- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G00040.1 ID=NO09G00040.1|Name=NO09G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=3109bp|location=Sequence derived from alignment at chr9:12117..15225- (Nannochloropsis oceanica) ATGCGATTTGCCCTGCCTCTCGTCCTGGCGCCGACTTTGGCTGTCACGGG
CTTCCTCCTTCCCAGCTTGCCTCAGGTAGGTGGACCTAGGGAGTCGAGCA
GCACACGATTTCCTGTACATCCGTCCTTCCAGCCCTGATCATTCGTTCGC
TCTACTCAGCCCTGTGTACATCCATCATTTGCACTGTGCTGCGCATGGCG
TGCTTCATTTCAAATACCTCCTCCCCTTCCCATCGGTTTCCCTTCCATCC
AGACCCGGACCGTCACCCGCTCCTCCTCCTTCCTGCGCATGGCCCTCCCG
TCCCTGAATGAGGAGAAGCCCGCGTCATTCTATCCATTTGAGACGTCATT
AGGCATGAAGGGCAAGGGGAAGAAGGACAATAGTGAAGTGGGGAGCAACA
CTGCCAGGTATGGAGATGAGGGCACACAGGGAGGGGGACGGGAAGGGAGA
GTGAGAGGGATGGGTGAAGGAAAGGGAAGATGAAGAAGGAAAGGAATGTA
AAGGGGAGGGGAGACCGATGTGGCCTATACACTGTAAGATTCAAGGAAGA
ATCCAATCTCGGCTAGACCACATTACCTCGTCATCTTCGTCCTTCCTTCC
CGCCCTCCCTCCCTCCCTCCTTGCTTCCTCCTTTCCTTGGTAGGCAACTC
CTGGGCATGAAAGGTGCGGCTGAGACGGACGACCTCCTCAAGATTCGCAT
CCAGCTCATGAAGCCTGTCACTTGGATCCCTCTCATTTGGGGCGTGGTAC
GTTGGAACAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGAATCCTGCATGCCTC
CAAAAAGATAATGAGTGTATTCCCCCCCCCTCCCTCCCTCCTTTGCTCTG
CGATGGTTCCGTCAGTAAAACCAATCAGTGGCCGAATCCCTTCAATCAAA
CCAGCCCGGACGCCATCCCTAAATACTCTTCCTCCTCCCTCTCTCCCTCC
TTTCCTCCCTCCCTCCCTCCTTCAGGTCTGCGGAGCCGCCGCCAGTGGCA
ACTACCACTGGGCCAATCCCCTGGACCAGGCCAATCCGGACGCCGTCCCT
CTTTCCCTCGGCTTGGAGGACGCTGCCAAGGCAGTCACATGTATGGTACG
TCCCTCCCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCACCCTCCTTT
CCACCCTCCCTCCCTCTCTATCCTCTTTGTTTCTCTATAGCAGCTTTTCC
TTTACTCCGCTTATGTGAATGCTGTATCTGAGGCTTCTCTCCTCATCAAG
TTCTAGCCCACCCTCATGGGCCTACAGACCGTTGAATCCCGTCGTAACCC
TCCCTCCCTCCCTCCCTCCCTCCCCCTCCTCAGCTTCTCGCCGGGCCCCT
CCTGACCGGTTTTACTCAAACCATTAACGACTGGTACGACAAGGACATCG
ACGCCATCAACGAGCCTTACCGCCCCATCCCCTCCGGGCGCATCTCCGAG
GTGTGGGAGGAGAAAGAGACAGAGGAAGGGCGGGAGAAAGAGGGGAAGAA
TGAGGGTATTACCCTTGTGTCCAACCCTAACAGAGTCTCACCACTCAATC
TCAACCCCACCTCCATTCCCTCCCTCCCTTCCTCCCTCCCTCTTTCCCTC
CCTCCCTCCCTCCAGGGCCAAGTGAAGGGGCAAATCTGGGGACTCCTTCT
GGCGGGCCTCGGCCTCGCCGGCGTGCTTGATTTGTGGGCCGGTCACACCG
AGCCCACGATCCTCGGTCTCTCCGCCCTGGGCTCCTTCATCTCCTACATC
TACAGCGCGCCGCCACTCAAGTTGAAGCAGGTGAAGAGAGGGACGAGGGA
GGGACAGAGGGAGGATGGGAGGAGGGAAAAGGAGGCTGCCCTTATTTTTT
GTTTTCTGCTGCCGCGGTGGGATGAGCACCTACCCTGACACGTTCCTCTC
CTTCCCTACCTTCCTACCTACCTACCTACCTACCTGCCTCCCTCCCTCCC
TTACAGAGCGGCTGGATCGGCAATTACGCGCTCGGGTGTTCTTACATCTC
CCTGCCCTGGTGGTGTGGGCAAGCCATGTTTGGCACTCTCAATGCACAGG
TGGTGGTGCTCACCATTCTCTACAGGTAGGTAGAGGGGGAAGAAGAGAGG
GAGGAAGAGAGGGAGGGCTGATCTGACCTATCTTTTGTTGCCATTGTAGA
GCGCACAAAAGCTATCTCCCAGTCTAATCTTTGCTGCCGCTCCCCCACCT
CTCCCTCCCTCTCTTCTTCCCCCCCTCCCTAGTCTGGCCGGGCTCGGCAT
TGCTATCGTCAACGACTTCAAGTCCATCGAGGGCGATCGGGCCATGGGCC
TTAACTCCCTTCCCGTGGCATTCGGGATCGATACTGCCAAATGGATCTGC
GTTGGCACCATTGACGTCACCCAGGTGGATGCCTTCCCTCCCTCCTTCCC
TCCCTTCCTCGCTCCCTTCCTCCTTCCCTTTCTCACTCTCATTCGTCTCT
AGGAAACTTCTCGAAATTGAAGCGTACCCAAACATATCGAAGCTCACTGA
AATCTCGTGTTCTCCTGCTTCCTTCCCCCCCCCCTCATCCTCTCCCCAAA
AGCTCGGCGTGGCTGGCTACCTGGCCTACATCGGCGAGACCACCTATGCG
CTCGCCCTGCTCGGCCTGATTTTACCCCAAATCTTCTTCCAATTCAAATA
CTTCTTGAAGGACCCCATCAAATATGATGTCAAGTATCAGGTGCGTACGT
CCCTCCGTCCCTCCCTCTCATTCCTTCCTTCCATTTTTCTGTTCTTGAGG
AATATTGTGGTCCATAGGATGTTGTAGGTGTGTGTTCAATCGACACATAG
TCTTACAAGCGTATACAGATCTCCTGATGACAAATTTTAGCTGATGGACC
TTAGCAAGCCCTCCCTCTTCCTATTCTTTCCTCTGTCCTTCCCTCTCCTT
TCCGCGAAACGATTGGTCAAGCACGTACTAATCGCTCCTCTTGACTTGCC
CTGCTTCCCTCCTTTGCTTCCTCAATAGGCGAGCGCACAGCCGTTCTTGG
TGCTGGGCATCCTGACGACGGCGCTGGCAGTGGGCCATCACGACTTTTCG
GGCATCTAA back to topCoding sequence (CDS) from alignment at chr9:12117..15225- >NO09G00040.1 ID=NO09G00040.1|Name=NO09G00040.1|organism=Nannochloropsis oceanica|type=CDS|length=1215bp|location=Sequence derived from alignment at chr9:12117..15225- (Nannochloropsis oceanica) ATGCGATTTGCCCTGCCTCTCGTCCTGGCGCCGACTTTGGCTGTCACGGG CTTCCTCCTTCCCAGCTTGCCTCAGACCCGGACCGTCACCCGCTCCTCCT CCTTCCTGCGCATGGCCCTCCCGTCCCTGAATGAGGAGAAGCCCGCGTCA TTCTATCCATTTGAGACGTCATTAGGCATGAAGGGCAAGGGGAAGAAGGA CAATAGTGAAGTGGGGAGCAACACTGCCAGGCAACTCCTGGGCATGAAAG GTGCGGCTGAGACGGACGACCTCCTCAAGATTCGCATCCAGCTCATGAAG CCTGTCACTTGGATCCCTCTCATTTGGGGCGTGGTCTGCGGAGCCGCCGC CAGTGGCAACTACCACTGGGCCAATCCCCTGGACCAGGCCAATCCGGACG CCGTCCCTCTTTCCCTCGGCTTGGAGGACGCTGCCAAGGCAGTCACATGT ATGCTTCTCGCCGGGCCCCTCCTGACCGGTTTTACTCAAACCATTAACGA CTGGTACGACAAGGACATCGACGCCATCAACGAGCCTTACCGCCCCATCC CCTCCGGGCGCATCTCCGAGGGCCAAGTGAAGGGGCAAATCTGGGGACTC CTTCTGGCGGGCCTCGGCCTCGCCGGCGTGCTTGATTTGTGGGCCGGTCA CACCGAGCCCACGATCCTCGGTCTCTCCGCCCTGGGCTCCTTCATCTCCT ACATCTACAGCGCGCCGCCACTCAAGTTGAAGCAGAGCGGCTGGATCGGC AATTACGCGCTCGGGTGTTCTTACATCTCCCTGCCCTGGTGGTGTGGGCA AGCCATGTTTGGCACTCTCAATGCACAGGTGGTGGTGCTCACCATTCTCT ACAGTCTGGCCGGGCTCGGCATTGCTATCGTCAACGACTTCAAGTCCATC GAGGGCGATCGGGCCATGGGCCTTAACTCCCTTCCCGTGGCATTCGGGAT CGATACTGCCAAATGGATCTGCGTTGGCACCATTGACGTCACCCAGCTCG GCGTGGCTGGCTACCTGGCCTACATCGGCGAGACCACCTATGCGCTCGCC CTGCTCGGCCTGATTTTACCCCAAATCTTCTTCCAATTCAAATACTTCTT GAAGGACCCCATCAAATATGATGTCAAGTATCAGGCGAGCGCACAGCCGT TCTTGGTGCTGGGCATCCTGACGACGGCGCTGGCAGTGGGCCATCACGAC TTTTCGGGCATCTAA back to top
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