NO09G00010.1, NO09G00010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00010.1
Unique NameNO09G00010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3402
Alignment locationchr9:464..4088 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:464..4088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00010.1 vs.
Match: EWM27831.1 (EGF-like region, conserved site [Nannochloropsis gaditana])

HSP 1 Score: 373.2 bits (957), Expect = 6.800e-100
Identity = 181/273 (66.30%), Postives = 217/273 (79.49%), Query Frame = 0 
Query:    1 MARLSYCFSLVFLPTLLSVLTVQAHDRWPGSLTCPSTTKQVLAPTLNASGLCDCAPGWNGPECGVCTTNDACAAVYGEGSKCSQTSFAGEKKLEGFCEITSPAITDLLHGTGIVQMKYAPGDFSFLFLKRHDSPDDPSKATYLPIFRCMSDQTTVSTNHGTGMVTYTSPDLSCELTCVVGQDRACSIMLQRVVKAVGAMGGSTIICDPFTKGCRVKEMTLETFIDGGVQTTGCLMSECLPPLATPVIKTKPTLTAPAVPDAAAPAPPKGKLRR 274
            MARL    +L+ +  LL +L V  H+ WPGS TCP T  Q L+P +NASG+CDCA GW GPECG+CT+++ACA++ GEGS+C+QTSFAGEKKL GFCEIT+PAITDLLHGTG VQMK+ PGDFSFLF+KRHD+P DP+ ATYLPIFRC SD+TTV TNHGTG VTYTSPDLSC LTCVVG+DR+C+ +L+RVVK VG++GGSTIICDPFTK C VKE+TL+TFI GGV+T  C +SECL P+     KT P L  P+VP  AAP  P   + R
Sbjct:   21 MARLFSSSALLLISALLPLLDVGGHEAWPGSFTCPPT--QTLSPRVNASGVCDCAAGWVGPECGICTSDEACASIEGEGSRCAQTSFAGEKKLAGFCEITTPAITDLLHGTGFVQMKFEPGDFSFLFIKRHDNPTDPALATYLPIFRCQSDRTTVKTNHGTGAVTYTSPDLSCALTCVVGEDRSCTSILERVVKTVGSLGGSTIICDPFTKACAVKEITLDTFIAGGVKTANCQVSECLAPVPLVSPKTTP-LQPPSVP--AAPTAPAAPITR 288
The following BLAST results are available for this feature:
BLAST of NO09G00010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27831.16.800e-10066.30EGF-like region, conserved site [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00010NO09G00010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00010.1NO09G00010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00010.1.cds1NO09G00010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00010.1.cds2NO09G00010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00010.1 ID=NO09G00010.1|Name=NO09G00010.1|organism=Nannochloropsis oceanica|type=mRNA|length=3402bp
TTCGTCCCTCATTCGCTTCGCTTGAGAAAGCAACAGACCATATGGTGAAT
ACCAGCGGTATATGTCTAGTGCTTTCCCTCGTTTTGTAGTCTGTGATTCT
ATTGAGTGCCCCAAGTCATACTTTGCCAATTTCCCTGTCACATGCCATTT
TCGTGGCATGCCTATGGTTTGTCGAAGCCCGGCGGCATCACCTCGGGCTG
TTCACCCCGTTGTCCCGTTTGTGCTTCTCTGTTCATCGAAAGCCTTGCGT
AAGACATCTGGCCTCTGCCGGTCACTCTATGAAATAATCTCGCTATGAAA
ATAATTGATAGCAATGCAAGCTTACCTCAACTACTGACCACAGCTCTTCT
TTTCTTTTCCGCCACCCCACCCCACAGCCAGCCTTCTCCCCCTTACTAAA
CCAGAAAAAGCATCAAACATGGCCCGCCTTTCCTACTGCTTTTCTCTTGT
CTTTCTCCCGACCCTCCTGTCCGTCCTGACTGTGCAAGCCCACGACCGGT
GGCCCGGAAGCTTAACGTGCCCCTCGACGACGAAGCAGGTCTTGGCTCCC
ACCCTCAACGCCAGCGGTCTCTGTGACTGCGCCCCCGGGTGGAATGGGCC
TGAGTGCGGTGTTTGCACGACCAATGACGCCTGTGCCGCTGTGTATGGCG
AGGGTTCGAAGTGCTCGCAGACATCTTTTGCCGGGGAGAAGAAACTGGAA
GGGTTTTGCGAGATCACCTCGCCCGCTATCACCGACCTCCTGCATGGTAC
GGGCATCGTGCAAATGAAGTATGCCCCGGGGGACTTCTCGTTCCTTTTTC
TCAAGCGTCACGACAGCCCGGACGACCCGTCCAAGGCCACCTACCTGCCC
ATCTTCCGCTGTATGTCCGACCAGACCACCGTCTCCACCAACCACGGCAC
GGGCATGGTCACCTACACGTCGCCCGACCTCTCTTGTGAGCTGACCTGTG
TGGTCGGGCAGGACAGGGCCTGCTCGATAATGCTGCAGCGGGTGGTGAAG
GCCGTGGGAGCCATGGGAGGGAGCACCATTATCTGCGATCCCTTTACCAA
GGGCTGCCGAGTTAAGGAGATGACGCTTGAGACGTTCATCGACGGGGGCG
TGCAAACCACCGGCTGCCTGATGAGTGAATGCTTGCCACCACTTGCCACC
CCAGTCATCAAGACCAAGCCTACCCTCACTGCTCCTGCGGTGCCTGATGC
GGCGGCGCCTGCCCCCCCTAAGGGAAAGCTGCGTCGTGATGTGTAAGAAG
GAAGGGGAAAAGGGGGGGGGGAAAGGGCAGAAGAGGGGCCTCTAATTTCG
TCCTCTGGGGCTGCTTAGGATGCGATGTGGGGGGGCTGCATCGCATGGAC
GGATCTGTTGGGATGAGGGAGAGACATTAGAAAAACGAAGAGGAGGGAAG
ATCCTCCCAGGAGGGAGCAAAGGAGGGATAAAGGAGAGGCAGTATGTGCA
GAGAGGAGGTTATGTGGGTGGTGCACACACGCACAAACAAAGTATGAGAC
GCGCCAAGATTATCATAAGTAGATGAGCAAGAGAGGATGACAAAGCAAAA
GCCGCGTACAAACAGCTGGGACGCGAACGAGAGGCAGGCACACCACCACC
ACCACCACCATCATCACCACACACAATGAGAAACAGCATGGAAAAAAGGA
AGAAATTAGACAATCCATTTTCAGGGTAGCATCGTTGCATTTGTCCTCTT
TCCTATCCTTGTTTATTTTTCTCGCTTTTTGGTTGTTCCGTTGCGTTTCA
GCTGTCTGCCTCTTTCCCTTTCCCTCTCTTATTCCTTCTCCCTACCTGTT
GCTTCATTCATTCATCTCCTCCCTCTTTCTTCTCCTCTCCGCCGCCATTC
CCGTTCTCCCCCTCCTCCTTGTCCTCTTTAGCTTTCTCCACTCCCTTTGT
TGATGTTTCGGATAAATCAGCGGCAGCTGTTGCTTCTGCTGCTACTACTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTTCTGCTGCTTCT
TTTTCCGCCTCTTTCTCCAACTCCTCCGCGGCCTCCAAAGCGAGGCGGTC
GGATCGGCGCTTCTTGACGGCGTCGGATACTTCCTTGGCAACCTGAGGGA
GGGTAGGAGAGAGAGAAGGAGGGTGGTAAGGAGGGAGGGAGAAAGGGAAA
GTGCAAGGGAGAGAAAAGGTTGGATTTGCTAGCTTTGAAGGTCCAACAAA
ATAGGAACGAAGGAAAAGGAAAAGGGGGGGGAGAAAGGAAGGGCAGGGGA
CGAACCTTTTCGACCTCGGCGATGGAGTCGGCAGGCACGCGGTGAATGAG
CTCGCCTGCCAGGAAGAGGATGAAGAAAGGAGCGAGAAGGGTGAGAAGCA
AAGTGGTGATGGTGAAGGCATGACTAATCCGTGACGCGCCATTCTCCTTC
CCTCTCCCTGTCCCTTCGTCCCTTCCTTCCTAGTCTCAACACAAGCCAAA
AAAGTTGTGCTCCCTGTTCCGTCTTCTTTTCCTCCCTCGCTCCCTCCCTC
CTTACCGTCCTGTGCCTGCAAGCCCGAGGAATAGTCCTTCTCGATGGCCC
CCAGGAGCTTCCATTCCTGGGAGGGAAGGAGGGAGGGAGGAAGGGAGGAC
GAGGCGGTGAGATGACAAGGCAGGATCCATGGAAAGGAGGAAGAGGAGAG
GAGAGGAATCAGAGCGGAAGAAAAGGAGGACGAGGCCATGAGGTCATGCA
CAACAAGAAATCAGGAAAAAGTGAGCAAGGAGAGTAGGGAAGGAAGCAGA
AATCAAAAGGAGGGAGACGGGGGTGTACCTCCCTGTTGCCGATCAAGGAG
ACGGCGATTCCCTCCGCGCCGAAGCGGCCAGTGCGACCGACGCGATGGAT
GTAAGTCTCAGGGGCCCTGGTGGTGTATGAGTGATCGCATGGGATGTATA
ATTATTTGGATTGAATGCACTAGATGTATGGTAATTCGCATATCGTGTAT
GATCACTTGCATGAGATGTACGACTATTCGCGAGGGGTGCATTCCTTTCT
TGCTCTGTGGAAGAACGTGGTGGAATCCCTCCCTCCTTGACCCTCCCTCC
CTCCTTATCTTTTACCCTTCCTCCCTCCCTCCTTACCCCGTATCCGTGAA
GCTCCCCTCCTCGTCACTCCGGGCCACGCGCGGTTGGAAAGGCATGTCAA
AATTCACGACCCACGCTATGCCTAGGTAGGTAGAGAGGTGGGTAGGTAGG
AGTGGAAGGAAGGAGGGAGGGACGTCGGGATGTGGCAACAAAACCCTCTT
CTCTACTGTCAGTGATTCTTCTGCCACCTCAGGCCAACGTCATTCCGTCT
GTTGCTTCTAATCCTTTTATCTCCCTCCCTCCCTCCCTCCGTATCTCCCT
CCCTCCCTCCCTCCGTATCTCCCTCCCTACCTTCCACGTCAATGCCCCGG
GA
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protein sequence of NO09G00010.1

>NO09G00010.1-protein ID=NO09G00010.1-protein|Name=NO09G00010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MARLSYCFSLVFLPTLLSVLTVQAHDRWPGSLTCPSTTKQVLAPTLNASG
LCDCAPGWNGPECGVCTTNDACAAVYGEGSKCSQTSFAGEKKLEGFCEIT
SPAITDLLHGTGIVQMKYAPGDFSFLFLKRHDSPDDPSKATYLPIFRCMS
DQTTVSTNHGTGMVTYTSPDLSCELTCVVGQDRACSIMLQRVVKAVGAMG
GSTIICDPFTKGCRVKEMTLETFIDGGVQTTGCLMSECLPPLATPVIKTK
PTLTAPAVPDAAAPAPPKGKLRRDV*
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mRNA from alignment at chr9:464..4088+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00010.1 ID=NO09G00010.1|Name=NO09G00010.1|organism=Nannochloropsis oceanica|type=mRNA|length=3625bp|location=Sequence derived from alignment at chr9:464..4088+ (Nannochloropsis oceanica)
TTCGTCCCTCATTCGCTTCGCTTGAGAAAGCAACAGACCATATGGTGAAT
ACCAGCGGTATATGTCTAGTGCTTTCCCTCGTTTTGTAGTCTGTGATTCT
ATTGAGTGCCCCAAGTCATACTTTGCCAATTTCCCTGTCACATGCCATTT
TCGTGGCATGCCTATGGTTTGTCGAAGCCCGGCGGCATCACCTCGGGCTG
TTCACCCCGTTGTCCCGTTTGTGCTTCTCTGTTCATCGAAAGCCTTGCGT
AAGACATCTGGCCTCTGCCGGTCACTCTATGAAATAATCTCGCTATGAAA
ATAATTGATAGCAATGCAAGCTTACCTCAACTACTGACCACAGCTCTTCT
TTTCTTTTCCGCCACCCCACCCCACAGCCAGCCTTCTCCCCCTTACTAAA
CCAGAAAAAGCATCAAACATGGCCCGCCTTTCCTACTGCTTTTCTCTTGT
CTTTCTCCCGACCCTCCTGTCCGTCCTGACTGTGCAAGCCCACGACCGGT
GGCCCGGAAGCTTAACGTGCCCCTCGACGACGAAGCAGGTCTTGGCTCCC
ACCCTCAACGCCAGCGGTCTCTGTGACTGCGCCCCCGGGTGGAATGGGCC
TGAGTGCGGTGTTTGCACGACCAATGACGCCTGTGCCGCTGTGTATGGCG
AGGGTTCGAAGTGCTCGCAGACATCTTTTGCCGGGGAGAAGAAACTGGTA
CGCACTCACCACTTACACCTGCACCTGTTTTCTTTGTTAGGGTAGTGAGA
AAGGGGCCAGGATGAGTTGGGGATGGAAAGCGAATGCAGAAACCCAAGGA
GAAGATAAAAGGAGGGTATGAACTCTAATTATATACATGTTGAAGCGTAA
GGAAAATCAAAAATCAGCCAGTCCCATTAATGTACACTTTCTTCCCCCCT
TCCTTCCCTCCAACGCACAGGAAGGGTTTTGCGAGATCACCTCGCCCGCT
ATCACCGACCTCCTGCATGGTACGGGCATCGTGCAAATGAAGTATGCCCC
GGGGGACTTCTCGTTCCTTTTTCTCAAGCGTCACGACAGCCCGGACGACC
CGTCCAAGGCCACCTACCTGCCCATCTTCCGCTGTATGTCCGACCAGACC
ACCGTCTCCACCAACCACGGCACGGGCATGGTCACCTACACGTCGCCCGA
CCTCTCTTGTGAGCTGACCTGTGTGGTCGGGCAGGACAGGGCCTGCTCGA
TAATGCTGCAGCGGGTGGTGAAGGCCGTGGGAGCCATGGGAGGGAGCACC
ATTATCTGCGATCCCTTTACCAAGGGCTGCCGAGTTAAGGAGATGACGCT
TGAGACGTTCATCGACGGGGGCGTGCAAACCACCGGCTGCCTGATGAGTG
AATGCTTGCCACCACTTGCCACCCCAGTCATCAAGACCAAGCCTACCCTC
ACTGCTCCTGCGGTGCCTGATGCGGCGGCGCCTGCCCCCCCTAAGGGAAA
GCTGCGTCGTGATGTGTAAGAAGGAAGGGGAAAAGGGGGGGGGGAAAGGG
CAGAAGAGGGGCCTCTAATTTCGTCCTCTGGGGCTGCTTAGGATGCGATG
TGGGGGGGCTGCATCGCATGGACGGATCTGTTGGGATGAGGGAGAGACAT
TAGAAAAACGAAGAGGAGGGAAGATCCTCCCAGGAGGGAGCAAAGGAGGG
ATAAAGGAGAGGCAGTATGTGCAGAGAGGAGGTTATGTGGGTGGTGCACA
CACGCACAAACAAAGTATGAGACGCGCCAAGATTATCATAAGTAGATGAG
CAAGAGAGGATGACAAAGCAAAAGCCGCGTACAAACAGCTGGGACGCGAA
CGAGAGGCAGGCACACCACCACCACCACCACCATCATCACCACACACAAT
GAGAAACAGCATGGAAAAAAGGAAGAAATTAGACAATCCATTTTCAGGGT
AGCATCGTTGCATTTGTCCTCTTTCCTATCCTTGTTTATTTTTCTCGCTT
TTTGGTTGTTCCGTTGCGTTTCAGCTGTCTGCCTCTTTCCCTTTCCCTCT
CTTATTCCTTCTCCCTACCTGTTGCTTCATTCATTCATCTCCTCCCTCTT
TCTTCTCCTCTCCGCCGCCATTCCCGTTCTCCCCCTCCTCCTTGTCCTCT
TTAGCTTTCTCCACTCCCTTTGTTGATGTTTCGGATAAATCAGCGGCAGC
TGTTGCTTCTGCTGCTACTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTACTTCTGCTGCTTCTTTTTCCGCCTCTTTCTCCAACTCCTCC
GCGGCCTCCAAAGCGAGGCGGTCGGATCGGCGCTTCTTGACGGCGTCGGA
TACTTCCTTGGCAACCTGAGGGAGGGTAGGAGAGAGAGAAGGAGGGTGGT
AAGGAGGGAGGGAGAAAGGGAAAGTGCAAGGGAGAGAAAAGGTTGGATTT
GCTAGCTTTGAAGGTCCAACAAAATAGGAACGAAGGAAAAGGAAAAGGGG
GGGGAGAAAGGAAGGGCAGGGGACGAACCTTTTCGACCTCGGCGATGGAG
TCGGCAGGCACGCGGTGAATGAGCTCGCCTGCCAGGAAGAGGATGAAGAA
AGGAGCGAGAAGGGTGAGAAGCAAAGTGGTGATGGTGAAGGCATGACTAA
TCCGTGACGCGCCATTCTCCTTCCCTCTCCCTGTCCCTTCGTCCCTTCCT
TCCTAGTCTCAACACAAGCCAAAAAAGTTGTGCTCCCTGTTCCGTCTTCT
TTTCCTCCCTCGCTCCCTCCCTCCTTACCGTCCTGTGCCTGCAAGCCCGA
GGAATAGTCCTTCTCGATGGCCCCCAGGAGCTTCCATTCCTGGGAGGGAA
GGAGGGAGGGAGGAAGGGAGGACGAGGCGGTGAGATGACAAGGCAGGATC
CATGGAAAGGAGGAAGAGGAGAGGAGAGGAATCAGAGCGGAAGAAAAGGA
GGACGAGGCCATGAGGTCATGCACAACAAGAAATCAGGAAAAAGTGAGCA
AGGAGAGTAGGGAAGGAAGCAGAAATCAAAAGGAGGGAGACGGGGGTGTA
CCTCCCTGTTGCCGATCAAGGAGACGGCGATTCCCTCCGCGCCGAAGCGG
CCAGTGCGACCGACGCGATGGATGTAAGTCTCAGGGGCCCTGGTGGTGTA
TGAGTGATCGCATGGGATGTATAATTATTTGGATTGAATGCACTAGATGT
ATGGTAATTCGCATATCGTGTATGATCACTTGCATGAGATGTACGACTAT
TCGCGAGGGGTGCATTCCTTTCTTGCTCTGTGGAAGAACGTGGTGGAATC
CCTCCCTCCTTGACCCTCCCTCCCTCCTTATCTTTTACCCTTCCTCCCTC
CCTCCTTACCCCGTATCCGTGAAGCTCCCCTCCTCGTCACTCCGGGCCAC
GCGCGGTTGGAAAGGCATGTCAAAATTCACGACCCACGCTATGCCTAGGT
AGGTAGAGAGGTGGGTAGGTAGGAGTGGAAGGAAGGAGGGAGGGACGTCG
GGATGTGGCAACAAAACCCTCTTCTCTACTGTCAGTGATTCTTCTGCCAC
CTCAGGCCAACGTCATTCCGTCTGTTGCTTCTAATCCTTTTATCTCCCTC
CCTCCCTCCCTCCGTATCTCCCTCCCTCCCTCCCTCCGTATCTCCCTCCC
TACCTTCCACGTCAATGCCCCGGGA
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Coding sequence (CDS) from alignment at chr9:464..4088+

>NO09G00010.1 ID=NO09G00010.1|Name=NO09G00010.1|organism=Nannochloropsis oceanica|type=CDS|length=828bp|location=Sequence derived from alignment at chr9:464..4088+ (Nannochloropsis oceanica)
ATGGCCCGCCTTTCCTACTGCTTTTCTCTTGTCTTTCTCCCGACCCTCCT
GTCCGTCCTGACTGTGCAAGCCCACGACCGGTGGCCCGGAAGCTTAACGT
GCCCCTCGACGACGAAGCAGGTCTTGGCTCCCACCCTCAACGCCAGCGGT
CTCTGTGACTGCGCCCCCGGGTGGAATGGGCCTGAGTGCGGTGTTTGCAC
GACCAATGACGCCTGTGCCGCTGTGTATGGCGAGGGTTCGAAGTGCTCGC
AGACATCTTTTGCCGGGGAGAAGAAACTGGAAGGGTTTTGCGAGATCACC
TCGCCCGCTATCACCGACCTCCTGCATGGTACGGGCATCGTGCAAATGAA
GTATGCCCCGGGGGACTTCTCGTTCCTTTTTCTCAAGCGTCACGACAGCC
CGGACGACCCGTCCAAGGCCACCTACCTGCCCATCTTCCGCTGTATGTCC
GACCAGACCACCGTCTCCACCAACCACGGCACGGGCATGGTCACCTACAC
GTCGCCCGACCTCTCTTGTGAGCTGACCTGTGTGGTCGGGCAGGACAGGG
CCTGCTCGATAATGCTGCAGCGGGTGGTGAAGGCCGTGGGAGCCATGGGA
GGGAGCACCATTATCTGCGATCCCTTTACCAAGGGCTGCCGAGTTAAGGA
GATGACGCTTGAGACGTTCATCGACGGGGGCGTGCAAACCACCGGCTGCC
TGATGAGTGAATGCTTGCCACCACTTGCCACCCCAGTCATCAAGACCAAG
CCTACCCTCACTGCTCCTGCGGTGCCTGATGCGGCGGCGCCTGCCCCCCC
TAAGGGAAAGCTGCGTCGTGATGTGTAA
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Synonyms
Publications