NO08G04400.1, NO08G04400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G04400.1
Unique NameNO08G04400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1686
Alignment locationchr8:1289060..1290745 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1289060..1290745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G04400.1 vs.
Match: XP_005852702.1 (jmjc domain-containing 4-like protein, partial [Nannochloropsis gaditana CCMP526]; XP_005855752.1 jmjc domain-containing 4-like protein, partial [Nannochloropsis gaditana CCMP526]; EKU20607.1 jmjc domain-containing 4-like protein, partial [Nannochloropsis gaditana CCMP526]; EKU23130.1 jmjc domain-containing 4-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 389.0 bits (998), Expect = 2.400e-104
Identity = 243/561 (43.32%), Postives = 310/561 (55.26%), Query Frame = 0 
Query:    9 HDTANTSISSSIARIDFAAASVTLLRAYLDANVPFILVNVASNWRAMREWVAPGEEEDFVTIDLLQATFRGR-------DVLVPVVECHSGNRDENDDAVRQQSEVGRGNSKSGTNSMQHAYGEEPRRERTLTEYAALWRSGEAEARRLYMKDWHIVKALRAICKDDHISGVEGTTEQHVHILSSTTTATVRESNNEDNGKGVRPDTAANRNGSTSSSSMTPSNVTEALASFPYYIVPSPLDDDWLNDWWDAPAMDAGHAAREDDFRFLYLGPAGSTTGVHHDVLCSYSWSVNLAGSKEWTLYPPASSPPAPFTTSSTDLPTAEP-ASMHEGTVPANQRQTQSLGFRPTSTASAPDAVSIASPFFHPGTVPTLVVRQGPGELMFVPSGWHHKVRNLTSCLSINHNWFNRSSLARVWAFLKEEASAVQEKLGHLRETFDEDVGGWERQCEVVLRANSAMNLTEWVGMLMWKAREFRRVGKIVDRDEARQDLEAILGVLREVASAPKLVDFLFPPHLERGNEQAEEGVPAPRLPLRIDLLPSVEAWLAAEIRQIEASLE-LIG 561
            H  +   I   I RI+ A+AS  LLR +LD+N PF++ ++AS W A R WV PGEEE+F T+DL +    G        + LVPVVEC        DD   +  E    ++ +      ++YG E R E   TEYA LWR+GEAEAR LY+KDWHIVK L+ +  D      +   E    I        V  +  +    GV+ +      G+  +  ++P+  T   A F    VP PL DDWLN WWDAPA +AGH AREDD+RFLYLGPAG+ TG+H+DVLCSYSWS NLAG+KEWTL  P       F   +  L +  P  S+    V    RQ               + + + S +FH                          VRN+T CLSINHNWFNRS L RVW F+KEEASAVQE+L  LRETFD  + GWERQCEVV+RANS++NLTEWV +L+WKAR+ R   K     +AR DL AIL VLREV  + + V+FLFP       E + E +    LPL+ +     E WLAAEI+Q+E   E L+G
Sbjct:    3 HGVSELKIILMIPRIESASASPALLRHFLDSNAPFLITDLASRWEATRAWVVPGEEENFQTLDLFENFICGHNRGELAEETLVPVVEC------PGDDDKHENVEGHHSHTSNSCQDKSNSYGTELRTEMHFTEYARLWRTGEAEARGLYLKDWHIVKVLKGL--DGKHDKQDVREEVKAGIKDGDELCDVLATGKQ----GVQEERHEELVGACGAE-VSPARPTAPSALFS---VPFPLTDDWLNAWWDAPASEAGHPAREDDYRFLYLGPAGTQTGLHYDVLCSYSWSANLAGTKEWTLIHPDQK---GFLAENLPLQSTVPFGSVDWSDVAVRVRQ------------GPGEMIFVPSGWFHR-------------------------VRNVTGCLSINHNWFNRSCLDRVWTFVKEEASAVQERLYDLRETFDASLCGWERQCEVVMRANSSINLTEWVDLLLWKARDLRLRQKDTVAPDARLDLLAILKVLREVQRSERYVNFLFPS--RNHEEPSVENLRPLPLPLQANSTSQTEEWLAAEIQQLEKCAERLVG 505
The following BLAST results are available for this feature:
BLAST of NO08G04400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852702.12.400e-10443.32jmjc domain-containing 4-like protein, partial [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G04400NO08G04400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G04400.1NO08G04400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G04400.1.cds1NO08G04400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G04400.1 ID=NO08G04400.1|Name=NO08G04400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1686bp
ATGCCTCCACCAGACCCCTCAGACCACGATACCGCCAACACAAGCATAAG
CAGCAGCATTGCTCGCATCGACTTTGCGGCCGCCAGCGTGACGCTTCTGC
GTGCCTACCTTGACGCCAACGTCCCCTTTATTCTCGTGAATGTGGCCAGC
AACTGGAGAGCCATGCGCGAATGGGTTGCTCCAGGAGAAGAGGAGGACTT
TGTCACCATTGATTTGCTCCAAGCCACATTTCGCGGGCGCGATGTGCTGG
TGCCTGTGGTGGAGTGCCACAGCGGGAATAGAGACGAAAACGACGACGCC
GTAAGGCAGCAATCGGAAGTTGGGAGGGGTAATAGCAAAAGCGGCACCAA
TAGCATGCAGCATGCATACGGAGAGGAGCCGCGAAGGGAGCGGACGTTGA
CCGAGTATGCAGCGCTGTGGCGGAGTGGGGAGGCGGAAGCTCGGAGATTG
TATATGAAAGACTGGCATATTGTCAAGGCGTTGCGGGCTATATGCAAAGA
TGACCACATTAGTGGCGTTGAAGGGACCACGGAGCAACATGTTCACATTT
TGTCATCTACCACCACGGCCACTGTCAGGGAATCGAATAACGAGGACAAT
GGAAAAGGTGTACGGCCTGATACCGCAGCCAACAGAAACGGCAGCACTAG
CAGCAGCAGCATGACCCCCTCGAACGTGACCGAGGCCCTAGCGTCGTTTC
CATACTATATTGTACCCTCACCCTTAGACGATGATTGGTTGAATGACTGG
TGGGATGCCCCAGCCATGGATGCCGGCCACGCTGCCCGAGAGGACGACTT
CCGGTTCCTGTATCTGGGACCTGCGGGTTCGACCACGGGCGTGCATCACG
ACGTGCTCTGCTCATACTCTTGGTCGGTCAACCTGGCTGGTAGCAAGGAA
TGGACTCTCTACCCCCCTGCTTCCTCACCACCTGCACCCTTCACGACTTC
TAGCACCGACTTGCCGACGGCAGAACCAGCATCCATGCACGAGGGAACTG
TGCCAGCAAATCAGAGGCAGACGCAGTCGCTCGGTTTCCGACCTACAAGC
ACGGCAAGCGCACCTGACGCGGTGAGCATTGCCTCTCCTTTTTTTCACCC
GGGCACTGTCCCCACCCTCGTAGTACGACAAGGACCCGGGGAACTGATGT
TCGTTCCTTCCGGATGGCATCACAAGGTGCGGAACCTTACGAGCTGCCTA
TCCATCAATCACAACTGGTTCAATCGCAGCAGTCTGGCGCGGGTGTGGGC
CTTCCTGAAAGAAGAGGCCTCGGCGGTGCAGGAAAAGCTGGGACACCTGC
GAGAGACGTTCGACGAAGACGTCGGTGGCTGGGAGCGGCAATGCGAAGTG
GTTCTACGAGCCAATAGTGCCATGAACCTGACAGAATGGGTAGGGATGCT
CATGTGGAAAGCTCGAGAGTTTAGGCGAGTGGGAAAGATCGTAGACAGGG
ATGAAGCCCGTCAAGACCTGGAGGCCATCCTCGGCGTGCTGAGGGAGGTG
GCATCGGCACCAAAATTGGTCGACTTTTTGTTCCCGCCGCATTTGGAGAG
GGGAAATGAACAGGCAGAGGAAGGGGTGCCAGCGCCGCGTTTGCCCTTGC
GAATAGACTTGCTGCCTAGTGTGGAGGCCTGGCTTGCGGCGGAGATACGT
CAGATAGAGGCGAGTTTGGAGCTGATAGGGATGTAG
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protein sequence of NO08G04400.1

>NO08G04400.1-protein ID=NO08G04400.1-protein|Name=NO08G04400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=562bp
MPPPDPSDHDTANTSISSSIARIDFAAASVTLLRAYLDANVPFILVNVAS
NWRAMREWVAPGEEEDFVTIDLLQATFRGRDVLVPVVECHSGNRDENDDA
VRQQSEVGRGNSKSGTNSMQHAYGEEPRRERTLTEYAALWRSGEAEARRL
YMKDWHIVKALRAICKDDHISGVEGTTEQHVHILSSTTTATVRESNNEDN
GKGVRPDTAANRNGSTSSSSMTPSNVTEALASFPYYIVPSPLDDDWLNDW
WDAPAMDAGHAAREDDFRFLYLGPAGSTTGVHHDVLCSYSWSVNLAGSKE
WTLYPPASSPPAPFTTSSTDLPTAEPASMHEGTVPANQRQTQSLGFRPTS
TASAPDAVSIASPFFHPGTVPTLVVRQGPGELMFVPSGWHHKVRNLTSCL
SINHNWFNRSSLARVWAFLKEEASAVQEKLGHLRETFDEDVGGWERQCEV
VLRANSAMNLTEWVGMLMWKAREFRRVGKIVDRDEARQDLEAILGVLREV
ASAPKLVDFLFPPHLERGNEQAEEGVPAPRLPLRIDLLPSVEAWLAAEIR
QIEASLELIGM*
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mRNA from alignment at chr8:1289060..1290745-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G04400.1 ID=NO08G04400.1|Name=NO08G04400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1686bp|location=Sequence derived from alignment at chr8:1289060..1290745- (Nannochloropsis oceanica)
ATGCCTCCACCAGACCCCTCAGACCACGATACCGCCAACACAAGCATAAG
CAGCAGCATTGCTCGCATCGACTTTGCGGCCGCCAGCGTGACGCTTCTGC
GTGCCTACCTTGACGCCAACGTCCCCTTTATTCTCGTGAATGTGGCCAGC
AACTGGAGAGCCATGCGCGAATGGGTTGCTCCAGGAGAAGAGGAGGACTT
TGTCACCATTGATTTGCTCCAAGCCACATTTCGCGGGCGCGATGTGCTGG
TGCCTGTGGTGGAGTGCCACAGCGGGAATAGAGACGAAAACGACGACGCC
GTAAGGCAGCAATCGGAAGTTGGGAGGGGTAATAGCAAAAGCGGCACCAA
TAGCATGCAGCATGCATACGGAGAGGAGCCGCGAAGGGAGCGGACGTTGA
CCGAGTATGCAGCGCTGTGGCGGAGTGGGGAGGCGGAAGCTCGGAGATTG
TATATGAAAGACTGGCATATTGTCAAGGCGTTGCGGGCTATATGCAAAGA
TGACCACATTAGTGGCGTTGAAGGGACCACGGAGCAACATGTTCACATTT
TGTCATCTACCACCACGGCCACTGTCAGGGAATCGAATAACGAGGACAAT
GGAAAAGGTGTACGGCCTGATACCGCAGCCAACAGAAACGGCAGCACTAG
CAGCAGCAGCATGACCCCCTCGAACGTGACCGAGGCCCTAGCGTCGTTTC
CATACTATATTGTACCCTCACCCTTAGACGATGATTGGTTGAATGACTGG
TGGGATGCCCCAGCCATGGATGCCGGCCACGCTGCCCGAGAGGACGACTT
CCGGTTCCTGTATCTGGGACCTGCGGGTTCGACCACGGGCGTGCATCACG
ACGTGCTCTGCTCATACTCTTGGTCGGTCAACCTGGCTGGTAGCAAGGAA
TGGACTCTCTACCCCCCTGCTTCCTCACCACCTGCACCCTTCACGACTTC
TAGCACCGACTTGCCGACGGCAGAACCAGCATCCATGCACGAGGGAACTG
TGCCAGCAAATCAGAGGCAGACGCAGTCGCTCGGTTTCCGACCTACAAGC
ACGGCAAGCGCACCTGACGCGGTGAGCATTGCCTCTCCTTTTTTTCACCC
GGGCACTGTCCCCACCCTCGTAGTACGACAAGGACCCGGGGAACTGATGT
TCGTTCCTTCCGGATGGCATCACAAGGTGCGGAACCTTACGAGCTGCCTA
TCCATCAATCACAACTGGTTCAATCGCAGCAGTCTGGCGCGGGTGTGGGC
CTTCCTGAAAGAAGAGGCCTCGGCGGTGCAGGAAAAGCTGGGACACCTGC
GAGAGACGTTCGACGAAGACGTCGGTGGCTGGGAGCGGCAATGCGAAGTG
GTTCTACGAGCCAATAGTGCCATGAACCTGACAGAATGGGTAGGGATGCT
CATGTGGAAAGCTCGAGAGTTTAGGCGAGTGGGAAAGATCGTAGACAGGG
ATGAAGCCCGTCAAGACCTGGAGGCCATCCTCGGCGTGCTGAGGGAGGTG
GCATCGGCACCAAAATTGGTCGACTTTTTGTTCCCGCCGCATTTGGAGAG
GGGAAATGAACAGGCAGAGGAAGGGGTGCCAGCGCCGCGTTTGCCCTTGC
GAATAGACTTGCTGCCTAGTGTGGAGGCCTGGCTTGCGGCGGAGATACGT
CAGATAGAGGCGAGTTTGGAGCTGATAGGGATGTAG
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Coding sequence (CDS) from alignment at chr8:1289060..1290745-

>NO08G04400.1 ID=NO08G04400.1|Name=NO08G04400.1|organism=Nannochloropsis oceanica|type=CDS|length=1686bp|location=Sequence derived from alignment at chr8:1289060..1290745- (Nannochloropsis oceanica)
ATGCCTCCACCAGACCCCTCAGACCACGATACCGCCAACACAAGCATAAG
CAGCAGCATTGCTCGCATCGACTTTGCGGCCGCCAGCGTGACGCTTCTGC
GTGCCTACCTTGACGCCAACGTCCCCTTTATTCTCGTGAATGTGGCCAGC
AACTGGAGAGCCATGCGCGAATGGGTTGCTCCAGGAGAAGAGGAGGACTT
TGTCACCATTGATTTGCTCCAAGCCACATTTCGCGGGCGCGATGTGCTGG
TGCCTGTGGTGGAGTGCCACAGCGGGAATAGAGACGAAAACGACGACGCC
GTAAGGCAGCAATCGGAAGTTGGGAGGGGTAATAGCAAAAGCGGCACCAA
TAGCATGCAGCATGCATACGGAGAGGAGCCGCGAAGGGAGCGGACGTTGA
CCGAGTATGCAGCGCTGTGGCGGAGTGGGGAGGCGGAAGCTCGGAGATTG
TATATGAAAGACTGGCATATTGTCAAGGCGTTGCGGGCTATATGCAAAGA
TGACCACATTAGTGGCGTTGAAGGGACCACGGAGCAACATGTTCACATTT
TGTCATCTACCACCACGGCCACTGTCAGGGAATCGAATAACGAGGACAAT
GGAAAAGGTGTACGGCCTGATACCGCAGCCAACAGAAACGGCAGCACTAG
CAGCAGCAGCATGACCCCCTCGAACGTGACCGAGGCCCTAGCGTCGTTTC
CATACTATATTGTACCCTCACCCTTAGACGATGATTGGTTGAATGACTGG
TGGGATGCCCCAGCCATGGATGCCGGCCACGCTGCCCGAGAGGACGACTT
CCGGTTCCTGTATCTGGGACCTGCGGGTTCGACCACGGGCGTGCATCACG
ACGTGCTCTGCTCATACTCTTGGTCGGTCAACCTGGCTGGTAGCAAGGAA
TGGACTCTCTACCCCCCTGCTTCCTCACCACCTGCACCCTTCACGACTTC
TAGCACCGACTTGCCGACGGCAGAACCAGCATCCATGCACGAGGGAACTG
TGCCAGCAAATCAGAGGCAGACGCAGTCGCTCGGTTTCCGACCTACAAGC
ACGGCAAGCGCACCTGACGCGGTGAGCATTGCCTCTCCTTTTTTTCACCC
GGGCACTGTCCCCACCCTCGTAGTACGACAAGGACCCGGGGAACTGATGT
TCGTTCCTTCCGGATGGCATCACAAGGTGCGGAACCTTACGAGCTGCCTA
TCCATCAATCACAACTGGTTCAATCGCAGCAGTCTGGCGCGGGTGTGGGC
CTTCCTGAAAGAAGAGGCCTCGGCGGTGCAGGAAAAGCTGGGACACCTGC
GAGAGACGTTCGACGAAGACGTCGGTGGCTGGGAGCGGCAATGCGAAGTG
GTTCTACGAGCCAATAGTGCCATGAACCTGACAGAATGGGTAGGGATGCT
CATGTGGAAAGCTCGAGAGTTTAGGCGAGTGGGAAAGATCGTAGACAGGG
ATGAAGCCCGTCAAGACCTGGAGGCCATCCTCGGCGTGCTGAGGGAGGTG
GCATCGGCACCAAAATTGGTCGACTTTTTGTTCCCGCCGCATTTGGAGAG
GGGAAATGAACAGGCAGAGGAAGGGGTGCCAGCGCCGCGTTTGCCCTTGC
GAATAGACTTGCTGCCTAGTGTGGAGGCCTGGCTTGCGGCGGAGATACGT
CAGATAGAGGCGAGTTTGGAGCTGATAGGGATGTAG
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Synonyms
Publications