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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr8 | genome | chr8:1285168..1288483 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G04390.1 vs.
Match: EWM26902.1 (ubiquitin-like domain-containing ctd phosphatase 1 [Nannochloropsis gaditana]) HSP 1 Score: 603.2 bits (1554), Expect = 6.800e-169 Identity = 314/422 (74.41%), Postives = 352/422 (83.41%), Query Frame = 0
Query: 49 SASASASAPDSSAALSMGIDDNTLLNEAHVREADVQSQELYELVAKWRGKEIDLGTLPGGCTIANIKILLEAKTRVLPERQKLIGLSVQGGKAAKDENTLEQLVLKGKRGPVKFMLMGTPEAESFVDPSEKTGLPEVFDDFELDVTAISEEWRRSVQNSENLRKFTAKTQVHLINPPRQGKRLLVLDLDHTLLDFSSREEVIDRLSMAEAASIMKRPHLDAFLAAVYPFYDLVAWSQTSWRWLEIKMVELGLLTHPAYRFCFVLDKTSMFHVESTKGNGSLFKHQVKPLQLIWTKFPHWNETNSVHVDDLSRNFALNTGNGVKIKAYYRNAEGASEDKELVYLGRYLVRLAT--CGPAAAGAGTTVVGVGDAGGEGGGG------------GENGG---------KDHRYWRDEAKRREGGG 448
S+ +S S+ ++A++ +DDN LL EA V EA VQSQ ELVAKWRGKEI+LG++P GCTIAN+KI+LEAKTRVLPE+QK+IGL++QGGK AK+E+TL+QLV+K KRGPV+FML+GTPEAE FVDP EK LPEVFDDF+LDVTA+SE WRRSVQNSENLRKFTAKTQVHLINPPR GKRLLVLDLDHTLLDFSSRE+VIDRL MAEAAS+MKRPHLDAFLAAVYP+YDLVAWSQTSWRWLEIKMVELGLLTHPAYRFCFVLDKTSMFHVESTKG+GSLFKHQVKPLQLIWTKFP W+E NS+HVDDLSRNFALNTGNG+KIKAYYRNAE ASED+EL+YLGRYLV +AT PA+ G GT DAG GGGG GE G +DH+ WRDEAK GGG
Sbjct: 27 SSLSSTSSFSQNSAVAFEMDDNLLLEEARVPEAQVQSQRSLELVAKWRGKEINLGSIPDGCTIANLKIILEAKTRVLPEKQKIIGLTIQGGKVAKNEHTLDQLVVKDKRGPVRFMLIGTPEAEVFVDPQEKESLPEVFDDFDLDVTALSEGWRRSVQNSENLRKFTAKTQVHLINPPRDGKRLLVLDLDHTLLDFSSREDVIDRLPMAEAASVMKRPHLDAFLAAVYPYYDLVAWSQTSWRWLEIKMVELGLLTHPAYRFCFVLDKTSMFHVESTKGDGSLFKHQVKPLQLIWTKFPQWDENNSIHVDDLSRNFALNTGNGLKIKAYYRNAERASEDRELLYLGRYLVNIATRPVAPASGGGGTPGGAGSDAGSGGGGGPGSRGRGWRGGLGEGGQGRSGTNQSLRDHKNWRDEAK---GGG 445
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G04390.1 ID=NO08G04390.1|Name=NO08G04390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1401bp
ATGGTCCACTGCCCTCACCTTACCTCCACTCAAACCCAAAGACGCTACGT
GGAGATGGAGGAGGACCAAAATCCTACAGCGTCAGACAGCTGCGGCTATG
TGAGCCGCACCAGTGGTTTCCCTCCTTTTCATACCTCTTCCGCTTCAGCC
TCAGCTTCTGCTTCTGCCCCTGATAGTTCTGCTGCCTTATCGATGGGCAT
TGACGACAACACCCTCCTAAATGAGGCTCACGTTAGAGAGGCTGACGTAC
AGTCTCAAGAGCTGTATGAATTGGTGGCTAAATGGCGGGGCAAGGAGATC
GATCTGGGGACCTTGCCGGGAGGCTGCACCATTGCCAACATCAAAATCCT
TCTAGAAGCAAAAACTCGCGTTCTCCCCGAAAGACAGAAGCTTATCGGCT
TGTCTGTGCAAGGGGGAAAGGCTGCCAAGGACGAGAACACGTTGGAGCAG
CTGGTGTTGAAGGGCAAGAGGGGGCCTGTTAAGTTTATGCTCATGGGCAC
GCCGGAGGCGGAGTCCTTCGTGGATCCGAGCGAGAAGACAGGCTTGCCGG
AGGTTTTCGACGACTTCGAGCTGGACGTCACAGCCATATCAGAGGAGTGG
CGGCGCTCGGTACAGAACAGCGAGAACCTACGCAAATTCACGGCCAAGAC
GCAGGTGCACCTCATCAACCCCCCACGCCAAGGGAAGCGGCTGCTGGTGC
TGGACCTTGACCACACCCTCCTCGACTTTAGCTCTCGGGAGGAGGTCATC
GATCGCCTGTCTATGGCCGAGGCTGCCAGCATCATGAAGCGGCCTCACCT
GGACGCCTTTCTGGCCGCCGTCTACCCCTTCTACGACCTGGTGGCCTGGA
GCCAGACGTCATGGCGGTGGCTGGAAATCAAGATGGTGGAGCTCGGCCTC
CTGACCCACCCCGCGTACAGGTTCTGCTTCGTCCTGGATAAGACGAGCAT
GTTCCACGTCGAGTCCACCAAGGGCAACGGAAGTCTCTTCAAACACCAGG
TGAAGCCGTTGCAGCTTATTTGGACCAAATTCCCCCACTGGAACGAAACC
AACTCCGTCCACGTCGACGACCTCTCCCGCAACTTTGCCTTGAACACGGG
CAATGGCGTAAAGATCAAGGCCTACTACCGGAACGCCGAAGGGGCGAGCG
AAGACAAGGAGCTCGTCTACCTCGGGCGGTATCTGGTCCGACTCGCCACG
TGCGGTCCAGCAGCGGCAGGAGCAGGAACAACTGTCGTGGGAGTAGGGGA
TGCAGGGGGGGAAGGGGGGGGAGGAGGAGAGAATGGAGGGAAAGACCACA
GATATTGGCGGGACGAGGCCAAGAGAAGAGAGGGCGGAGGAGAAGGAGGG
GGTGGGAGCGGCGGTGGAGGTGGAGGGGCAAGTAGTGGGGGCAGTGCATG
A back to topprotein sequence of NO08G04390.1 >NO08G04390.1-protein ID=NO08G04390.1-protein|Name=NO08G04390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp
MVHCPHLTSTQTQRRYVEMEEDQNPTASDSCGYVSRTSGFPPFHTSSASA
SASASAPDSSAALSMGIDDNTLLNEAHVREADVQSQELYELVAKWRGKEI
DLGTLPGGCTIANIKILLEAKTRVLPERQKLIGLSVQGGKAAKDENTLEQ
LVLKGKRGPVKFMLMGTPEAESFVDPSEKTGLPEVFDDFELDVTAISEEW
RRSVQNSENLRKFTAKTQVHLINPPRQGKRLLVLDLDHTLLDFSSREEVI
DRLSMAEAASIMKRPHLDAFLAAVYPFYDLVAWSQTSWRWLEIKMVELGL
LTHPAYRFCFVLDKTSMFHVESTKGNGSLFKHQVKPLQLIWTKFPHWNET
NSVHVDDLSRNFALNTGNGVKIKAYYRNAEGASEDKELVYLGRYLVRLAT
CGPAAAGAGTTVVGVGDAGGEGGGGGENGGKDHRYWRDEAKRREGGGEGG
GGSGGGGGGASSGGSA* back to topmRNA from alignment at chr8:1285168..1288483+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G04390.1 ID=NO08G04390.1|Name=NO08G04390.1|organism=Nannochloropsis oceanica|type=mRNA|length=3316bp|location=Sequence derived from alignment at chr8:1285168..1288483+ (Nannochloropsis oceanica)
ATGGTCCACTGCCCTCACCTTACCTCCACTCAAACCCAAAGACGCTACGT
GGAGATGGAGGAGGACCAAAATCCTACAGCGTCAGACAGCTGCGGCTATG
TGAGCCGCACCAGTGGTTTCCCTCCTTTTCATACCTCTTCCGCTTCAGCC
TCAGCTTCTGCTTCTGCCCCTGATAGTTCTGCTGCCTTATCGATGGGTAG
GTACGTGAATGAAGGGCATGACACGACATTGTCCATAAACCATGAGTCGA
GTTGTCTGACGCTGCAGGCTCGCAGGCTGCAAGCGGACTTTCGTTTCCTT
CTTTTCCGCGCTATTCATCCCCTCCCTCTCCCCTCCCTCCCTCCCTCCCT
CCCTCCTAACCTTCCTCTTCTCTCACAGGCATTGACGACAACACCCTCCT
AAATGAGGCTCACGTTAGAGAGGCTGACGTACAGTCTCAAGAGCTGTATG
AATTGGTGGCTAAATGGCGGGGCAAGGAGATCGATCTGGGGACCTTGCCG
GGAGGGTGTGTAGGAGGGAGAGGAGAGGGAGGGGAGGGAGAAAGGGAGGA
AGGGAATGCTGCCATCTTTCATGACGAAAGGGAGACCATAAGCAAGTGTT
GATTTATTTAAGTTAAGGACGTTTCGGAATGCGTACATGCGTCTATCCTT
GCCTCCCTGTGCTGTCACCCTCTCACACGCCCCCACCCTCCCTCCTTCCC
CTCCAGCTGCACCATTGCCAACATCAAAATCCTTCTAGAAGCAAAAACTC
GCGTTCTCCCCGAAAGACAGAAGCTTATCGGCTTGTCTGTGCAAGGGGGA
AAGGCTGCCAAGGACGAGAACACGTTGGAGCAGCTGGTGTTGAAGGGCAA
GAGGGGGCCTGTTAAGTTTATGCTCATGGGCACGCCGGAGGTAGGGAGGG
AGGTAGGGAGGGAGGAATAGTTGAGGACGGGACTAGCAAACGATGAGTCT
TTTCCTTCGTTCTTGGGATCTCTCGGTGATGCTTACATTTTGTGCGTGCT
GCCCTCTCAACACCATCTTTGTCTCTTCCCTCCCTCGCTCCCTCGCTCCC
TCCTCCCCTCCCTTGAGTAGGCGGAGTCCTTCGTGGATCCGAGCGAGAAG
ACAGGCTTGCCGGAGGTTTTCGACGACTTCGAGCTGGACGTCACAGCCAT
ATCAGAGGAGTGGCGGCGCTCGGTACAGAACAGCGAGAACCTACGCAAGT
GCGTTGATTTCCTCCCCTCCTCCCTCCCTCCCTCCCCCCCTCCATCCCCT
TTCTATTCTTTCCTTGATAAAATATTTTCACTTCTCATCGCTTCTTTCCT
CCTCCCCTTCCTCCCTCTCAAGATTCACGGCCAAGACGCAGGTGCACCTC
ATCAACCCCCCACGCCAAGGGAAGCGGCTGCTGGTGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAATGAGAGAGGAAGGAAGCGATGGGAGA
AGAAATAAAAGCACTGAGGTGCGATTGGACGATCTCGTATCTTCCTCATC
CCCGTCCCCTCTCCCTCCATCCCTCCCTCTCTCCCTCCCTCTTGTGTCTC
GCGCAGGTGCTGGACCTTGACCACACCCTCCTCGACTTTAGCTCTCGGGA
GGAGGTCATCGATCGGTGAGGAAGGGAGGAAGGGAAGGAGAGCAGGAGAG
GTGAAGGGCCACAGACTTGAATAGACTTGCCTTTCCTCTCATCGTACATG
CATACTGTTTTCCCCGTTACTCTGGTTCCTCCCACCGCGCTCCTTCCTCT
CCATCTCCCTTGTCAGCTACTCGGACCAGCTGCTTCCCATATAGACGGAC
TCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCGTCACACCCTCCCTCC
CTCCTCCCTCCCTCCCTCGCCCTCCAGCCTGTCTATGGCCGAGGCTGCCA
GCATCATGAAGCGGCCTCACCTGGACGCCTTTCTGGCCGCCGTCTACCCC
TTCTACGACCTGGTGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAAAG
AAAAAAGCAGGGATGGAAGAGGATGGGAGGAGGTAAACGAGGGAGGGAAC
GAGGGAGATATTTGTCCGCCGACCTCCACCCCCCTACTTGTTTGACCCCT
ACATATTTCACAAGAGCCCTAAAAATATGCATTAATTCCAACACTCACCC
ATTCACACCCCTTTTCCCTCACTCTCACTCCCACTCGGGCTGCTGCTAGG
CCTGGAGCCAGACGTCATGGCGGTGGCTGGAAATCAAGATGGTAAGGAAG
TGAGGAGGGAGGGGAGGACAGGGAGTGGTTGTGCTGGAGAGAGGGAGGCT
ACAGCAGGTGGATATGTATTCACCATTTTCCCCCCCTCTCTCCCTCCCTC
CCTCCCACCCTTTCTCCGTCCTCCCTCCCTCCCTCCCTTTCTCCGTCCTC
TAGGTGGAGCTCGGCCTCCTGACCCACCCCGCGTACAGGTTCTGCTTCGT
CCTGGATAAGACGAGCATGTTCCACGTCGAGTCCACCAAGGGCAACGGAA
GTCTCTTCAAACACCAGGTCGGGGGGGAAGGAGGAAAGACAGCAGGAAGG
CAGGCAGGGAGGGAGGGAGGGACGAAGGAATCCTTTGGATTTGTTCCGAG
CTTCCTGGATGGCTCACTACCTCGATCCGATCCACCTGACCCTTCATGTC
CTCGCCTTACTTGTGCTTGCCCCGTCAAGACAGCGCTTTCGGGAGCCCCT
TCCTTACCTTCCCCCCCCCGTCCTTGCAGGTGAAGCCGTTGCAGCTTATT
TGGACCAAATTCCCCCACTGGAACGAAACCAACTCCGTCCACGTCGACGA
CCTCTCCCGCAACTTTGCCTTGAACACGGGTAGGGGAGGAAGGAGGGAAG
GGGGAAAAGGAGGGAAGGAGGGAGGAAAGGAAGGAAAGAAAATGGGGGGG
CAGAAAGAAGACAGAGAAATCGACATTCGCGCCATCAATTGTGGGTGTAG
CTTGAATCTCAGCTCTGCGTATATCGGTACTCATTCCAGGCTCCCTCCCT
CCCTCCCGCCCCAGGCAATGGCGTAAAGATCAAGGCCTACTACCGGAACG
CCGAAGGGGCGAGCGAAGACAAGGAGCTCGTCTACCTCGGGCGGTATCTG
GTCCGACTCGCCACGTGCGGTCCAGCAGCGGCAGGAGCAGGAACAACTGT
CGTGGGAGTAGGGGATGCAGGGGGGGAAGGGGGGGGAGGAGGAGAGAATG
GAGGGAAAGACCACAGATATTGGCGGGACGAGGCCAAGAGAAGAGAGGGC
GGAGGAGAAGGAGGGGGTGGGAGCGGCGGTGGAGGTGGAGGGGCAAGTAG
TGGGGGCAGTGCATGA back to topCoding sequence (CDS) from alignment at chr8:1285168..1288483+ >NO08G04390.1 ID=NO08G04390.1|Name=NO08G04390.1|organism=Nannochloropsis oceanica|type=CDS|length=1401bp|location=Sequence derived from alignment at chr8:1285168..1288483+ (Nannochloropsis oceanica)
ATGGTCCACTGCCCTCACCTTACCTCCACTCAAACCCAAAGACGCTACGT
GGAGATGGAGGAGGACCAAAATCCTACAGCGTCAGACAGCTGCGGCTATG
TGAGCCGCACCAGTGGTTTCCCTCCTTTTCATACCTCTTCCGCTTCAGCC
TCAGCTTCTGCTTCTGCCCCTGATAGTTCTGCTGCCTTATCGATGGGCAT
TGACGACAACACCCTCCTAAATGAGGCTCACGTTAGAGAGGCTGACGTAC
AGTCTCAAGAGCTGTATGAATTGGTGGCTAAATGGCGGGGCAAGGAGATC
GATCTGGGGACCTTGCCGGGAGGCTGCACCATTGCCAACATCAAAATCCT
TCTAGAAGCAAAAACTCGCGTTCTCCCCGAAAGACAGAAGCTTATCGGCT
TGTCTGTGCAAGGGGGAAAGGCTGCCAAGGACGAGAACACGTTGGAGCAG
CTGGTGTTGAAGGGCAAGAGGGGGCCTGTTAAGTTTATGCTCATGGGCAC
GCCGGAGGCGGAGTCCTTCGTGGATCCGAGCGAGAAGACAGGCTTGCCGG
AGGTTTTCGACGACTTCGAGCTGGACGTCACAGCCATATCAGAGGAGTGG
CGGCGCTCGGTACAGAACAGCGAGAACCTACGCAAATTCACGGCCAAGAC
GCAGGTGCACCTCATCAACCCCCCACGCCAAGGGAAGCGGCTGCTGGTGC
TGGACCTTGACCACACCCTCCTCGACTTTAGCTCTCGGGAGGAGGTCATC
GATCGCCTGTCTATGGCCGAGGCTGCCAGCATCATGAAGCGGCCTCACCT
GGACGCCTTTCTGGCCGCCGTCTACCCCTTCTACGACCTGGTGGCCTGGA
GCCAGACGTCATGGCGGTGGCTGGAAATCAAGATGGTGGAGCTCGGCCTC
CTGACCCACCCCGCGTACAGGTTCTGCTTCGTCCTGGATAAGACGAGCAT
GTTCCACGTCGAGTCCACCAAGGGCAACGGAAGTCTCTTCAAACACCAGG
TGAAGCCGTTGCAGCTTATTTGGACCAAATTCCCCCACTGGAACGAAACC
AACTCCGTCCACGTCGACGACCTCTCCCGCAACTTTGCCTTGAACACGGG
CAATGGCGTAAAGATCAAGGCCTACTACCGGAACGCCGAAGGGGCGAGCG
AAGACAAGGAGCTCGTCTACCTCGGGCGGTATCTGGTCCGACTCGCCACG
TGCGGTCCAGCAGCGGCAGGAGCAGGAACAACTGTCGTGGGAGTAGGGGA
TGCAGGGGGGGAAGGGGGGGGAGGAGGAGAGAATGGAGGGAAAGACCACA
GATATTGGCGGGACGAGGCCAAGAGAAGAGAGGGCGGAGGAGAAGGAGGG
GGTGGGAGCGGCGGTGGAGGTGGAGGGGCAAGTAGTGGGGGCAGTGCATG
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