NO08G04370.1, NO08G04370.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G04370.1
Unique Name	NO08G04370.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2894
Alignment location	chr8:1279896..1283267 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:1279896..1283267 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO08G04370.1 vs.
Match: XP_005853540.1 (hypothetical protein NGA_0432801 [Nannochloropsis gaditana CCMP526]; EKU22819.1 hypothetical protein NGA_0432801 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 151.4 bits (381), Expect = 5.700e-33
Identity = 80/233 (34.33%), Postives = 136/233 (58.37%), Query Frame = 0

Query:  152 DREYYRPSPTPR--HVPSTTNNFEIRALPERERRSDTICGMPKW----VASIVFLGFLALAITIAVSVIMGWNMVAPRVQMVNFQFPLPYPYSDATGRIPVISTLLLSNFNRFRITTWPTTMQIFALPSRSPASLLATAPVQFMQLAPHQKSQPMQSFFDISNINGVEGGVFISNAIISGDVNYMYTTSIIRVRAWALNFIPVTRSYKSDCTIMRRWGVNPVTTSDCFGHFIR 379
            D E  +P  TP   H+ S+ ++  +  +   +   D +  MPKW    +   V + F++L + + VSV+ G+NM  P +++ N +  LP P+ D+ G IP++ST+L SN N F  T+  + ++I+ALPSRSP SLLA    + ++LA H++       F + ++  ++GG     A++ G    +YTTS  ++    L  IP +R++K +CT++R+WG NP+T SDC+G F +
Sbjct:   78 DGEDLKPPGTPSQIHLMSSMHSQVVNVVHHVQ---DYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEGQNCLLYTTSTSKITVKGLGLIPTSRNFKVECTVLRKWGENPLTLSDCYGRFYK 307

The following BLAST results are available for this feature:

BLAST of NO08G04370.1 vs.

BLAST of NO08G04370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005853540.1	5.700e-33	34.33	hypothetical protein NGA_0432801 [Nannochloropsis ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G04370	NO08G04370	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G04370.1	NO08G04370.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G04370.1.cds1	NO08G04370.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G04370.1.cds2	NO08G04370.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G04370.1.cds3	NO08G04370.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G04370.1.cds4	NO08G04370.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:1279896..1283267-
coding sequence from alignment at chr8:1279896..1283267-

mRNA sequence

>NO08G04370.1 ID=NO08G04370.1|Name=NO08G04370.1|organism=Nannochloropsis oceanica|type=mRNA|length=2894bp
ACCAAATATAGGTTGATGCCAGGGCGCTTTGTTCTTTTTTTGGTTTTGGT
TTAGGTGAGAGGTAGTTTGACAGGTGCAATACGTAACTTCTCATCACCCT
CCCCATCTTTTTTCTAATTTCTATGGGCAGTGCATCCCTCGTCTGCGTTT
CTGCCTCACACCTGTATACGTACATATGCAGCAAAGTGGAGAACTGAGCA
AAGAAGTCTGCATTTCCTCGCTTGCAACAACCAAAAATGTGTCGAAAAAT
GCCAAGAAATAAAACTAGAACAGTGCAATTGAAGTCACCACCTGCTCGTT
CCTTGCCAGTGCACGTCGCTCTCTTGCCAGGACGCAGATCATGAATCTCA
AACAAGGGACATAGGGACCAGAAACAAATACCACACCACCACGTCCGATT
GGTTATTGTGCTCTGCCACCTCGTGCTGGACGGATGGCACTACCAACAGC
GTCTAGCCTGATACATTTGGATTTTCCAATCGGGGTAGTGGTTGGCGCGA
GGCCATGGTCGCGCGTCCGAGCCCGAGCCTTGCCCCCCCCACCCCTCGTG
CCAGGCGCATTTTTAGCATCTCGACACGGCATCACTGTACTTTATGCGCA
TTAAATGAGCCACCACGCTAAATTGGTGGACACACAGTCTGTGTCCTTGG
GTGCCATGCCTTCAATCTTGATGCACGTCACACTGAACATCATGTGTCAG
TGCCACGAAGGATATTTTCGCTTTTCCCTCACATGTATTTACACGTCGAT
GCATGCACTTATTTCCGCCTCGCGTTCTACCCTACCACACAGCCACAAGC
AACAGGTCGGAACAAACCTTGTCCGTCTTCAGACAACAATGTCCTCGCGA
AGGCACTATTCAGATGAGTTGCCCTCCTCTATGCACGCCCACACCGCTGT
CTTCACGGATGAGGAGATGGGCGGCGAGAGTAGCAACACCGCCAACACAA
AGGTGAATCCAAACAGCCTTGGCAGCCCTCGGAGCCATCAAAATTATGAC
GGCAACGCCGGCAAGTGGGTGGATGGGCGTTCCTCCCGCCTGCCATGGGA
CGACGCCGACAGGGAGTATTATCGACCCAGTCCAACCCCACGCCATGTGC
CATCAACTACCAACAACTTCGAGATACGGGCCCTTCCGGAGAGAGAACGA
CGCTCGGACACAATCTGCGGCATGCCTAAATGGGTGGCTTCCATTGTCTT
TCTCGGTTTTCTTGCTCTAGCCATTACAATTGCGGTATCGGTTATCATGG
GTTGGAACATGGTCGCGCCACGCGTGCAAATGGTGAACTTCCAATTTCCC
CTTCCCTATCCGTATTCGGACGCCACAGGCAGGATCCCCGTCATCTCCAC
GCTGCTCCTCTCGAATTTTAACAGGTTTAGAATTACCACCTGGCCCACCA
CAATGCAAATCTTCGCCCTCCCTAGCCGCTCCCCCGCCTCCCTCCTGGCC
ACTGCCCCTGTACAGTTTATGCAGCTGGCGCCCCATCAGAAGAGTCAGCC
GATGCAGAGCTTTTTCGATATTTCCAATATCAATGGCGTGGAAGGAGGCG
TGTTTATCTCCAACGCTATCATATCGGGCGATGTGAACTACATGTACACA
ACCAGCATCATCCGCGTCCGTGCCTGGGCCCTGAACTTCATCCCCGTGAC
GCGCTCCTACAAGAGCGACTGCACCATCATGAGGAGGTGGGGCGTCAATC
CCGTCACCACCAGCGACTGCTTTGGACACTTCATACGGTAGTCGCGTCAC
GGACAGTGAATGCCACGGACTTGTTGTTGGTCAAGGGGCGAAGGAGGGAG
AGATGAAGGGAGGGAGGAAACTTCTGGAGTATTTGACTGGGAAAAGAGAC
AGAAAAGAGGATCCAGTGACATGACGGAGAGAAGGAGAAAGGAAAAAGAA
AAAAGACAGATGAATATGAACGAGAAGAAATGAGAAGAAAAAGAAGAGGA
GGAGGAGGAAAAAAGATGAAGAAGAAGGAAGGGGAGGAGAAGGGAAAGAA
GAAGAAAAAGAAAAATAAGAGAGAGAATAAGAGGGAGAGGAAGAGGAAGT
GAAAGCGAGGAGGACGAAGAGAGAGAGGAAGAGGACAAAAGTATCTACTG
TCGAGAGAGGATGAAAGTAACTACTGTTGCCCTTAGCAAGTGGGGCAATG
ATGCCCTCAATATATAACCAGGCCAGATGTGCTCACTACCACGTACCTAC
CGGTGATAGCTGCATTTGGTTGCCAGGGAGAGACAAAGGGAGGAAGGGGG
GACGGAGGGACGGAGGTTATGCGGCTTTGAAAGCTTCATAACTCTTTTTC
CCTGTGTCCTATGGGAGGACATATACCTATGGGAGGACATATACTATTTT
ACAATTAACTTATGAATTATGTGAGTGAAGAGAGCGCCAATTATGTATTG
ATTGAATGAAGACAAAGCAACACGTGCAGACAGTTGGGAAAGGATGTCCG
GGTGCGACACTTGAAAAAGGGGCCAGGTTAGCGATTGAGAGAATGTAAGT
AAGAGTCAAACGAAGGTGAGAGAGCGAATGAACTCAGAACGGCGACTGTT
CCGCTGGAGAAGGATGCTGCTGCTGCGGTTGCTGCTACGGCCAGCCCTGT
CGCACATCACATGGTGACAGAAGCGTGGATGCGGAGATCAGCCTTTTGCT
CCAGTGCATGAAATCAATGCTCAAACATCGGGAAGATTGCCGTGGCGTGT
CTGTGCTGACTCTCTTGCTTTTTGATGATGGAAGGGCAAGTTTGATCCGA
AGTACTGAGCAGTGAGAGCTATACCAAGTGACATAAAAAAAGTTATTTAC
ATATATGTGGTGAAACACGAAAAGAATAAAGAGAGAAAGACGACTGAAAT
GCATGGCTGAACTCTTAAGACGAAAATATCGTACAATATTGCGT

protein sequence of NO08G04370.1

>NO08G04370.1-protein ID=NO08G04370.1-protein|Name=NO08G04370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MSHHAKLVDTQSVSLGAMPSILMHVTLNIMCQCHEGYFRFSLTCIYTSMH
ALISASRSTLPHSHKQQVGTNLVRLQTTMSSRRHYSDELPSSMHAHTAVF
TDEEMGGESSNTANTKVNPNSLGSPRSHQNYDGNAGKWVDGRSSRLPWDD
ADREYYRPSPTPRHVPSTTNNFEIRALPERERRSDTICGMPKWVASIVFL
GFLALAITIAVSVIMGWNMVAPRVQMVNFQFPLPYPYSDATGRIPVISTL
LLSNFNRFRITTWPTTMQIFALPSRSPASLLATAPVQFMQLAPHQKSQPM
QSFFDISNINGVEGGVFISNAIISGDVNYMYTTSIIRVRAWALNFIPVTR
SYKSDCTIMRRWGVNPVTTSDCFGHFIR*

mRNA from alignment at chr8:1279896..1283267-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G04370.1 ID=NO08G04370.1|Name=NO08G04370.1|organism=Nannochloropsis oceanica|type=mRNA|length=3372bp|location=Sequence derived from alignment at chr8:1279896..1283267- (Nannochloropsis oceanica)
ACCAAATATAGGTTGATGCCAGGGCGCTTTGTTCTTTTTTTGGTTTTGGT
TTAGGTGAGAGGTAGTTTGACAGGTGCAATACGTAACTTCTCATCACCCT
CCCCATCTTTTTTCTAATTTCTATGGGCAGTGCATCCCTCGTCTGCGTTT
CTGCCTCACACCTGTATACGTACATATGCAGCAAAGTGGAGAACTGAGCA
AAGAAGTCTGCATTTCCTCGCTTGCAACAACCAAAAATGTGTCGAAAAAT
GCCAAGAAATAAAACTAGAACAGTGCAATTGAAGTCACCACCTGCTCGTT
CCTTGCCAGTGCACGTCGCTCTCTTGCCAGGACGCAGATCATGAATCTCA
AACAAGGGACATAGGGACCAGAAACAAATACCACACCACCACGTCCGATT
GGTTATTGTGCTCTGCCACCTCGTGCTGGACGGATGGCACTACCAACAGC
GTCTAGCCTGATACATTTGGATTTTCCAATCGGGGTAGTGGTTGGCGCGA
GGCCATGGTCGCGCGTCCGAGCCCGAGCCTTGCCCCCCCCACCCCTCGTG
CCAGGCGCATTTTTAGCATCTCGACACGGCATCACTGTACTTTATGCGCA
TTAAATGAGCCACCACGCTAAATTGGTGGACACACAGTCTGTGTCCTTGG
GTGCCATGCCTTCAATCTTGATGCACGTCACACTGAACATCATGTGTCAG
TGCCACGAAGGATATTTTCGCTTTTCCCTCACATGTATTTACACGTCGAT
GCATGCACTTATTTCCGCCTCGCGTTCTACCCTACCACACAGCCACAAGC
AACAGGTCGGAACAAACCTTGTCCGTCTTCAGACAACAATGTCCTCGCGA
AGGCACTATTCAGATGAGTTGCCCTCCTCTATGCACGCCCACACCGCTGT
CTTCACGGATGAGGAGATGGGCGGCGAGAGTAGCAACACCGCCAACACAA
AGGTGAATCCAAACAGCCTTGGCAGCCCTCGGAGCCATCAAAATTATGAC
GGCAACGCCGGCAAGTGGGTGGATGGGCGTTCCTCCCGCCTGCCATGGGA
CGACGCCGACAGGGAGTATTATCGACCCAGTCCAACCCCACGCCATGTGC
CATCAACTACCAACAACTTCGAGATACGGGCCCTTCCGGAGAGAGAACGA
CGCTCGGACACAATCTGCGGCATGTACGTACTGTATAATGGGAATCGGTG
GACTTCTTGCTGTGATGATCGCTAGTGTGACCATGCCAATGAGACCTACC
CTCCTCAACTTTCTCCCTCCTTTCCTTCCTGCCTTCCTCTCACCTCTCTT
CAGGCCTAAATGGGTGGCTTCCATTGTCTTTCTCGGTTTTCTTGCTCTAG
CCATTACAATTGCGGTATCGGTTATCATGGGTTGGAACATGGTCGCGCCA
CGCGTGCAAATGGTAAGGAGGGAGGAAGAAGCGAGAGCGTGAGGGAGGGA
TGGAGGGTGGGGACGAAATGGATTATAACTTCTGAAGATGGGACAGTTAA
ATTCCCTTTTTCTTTCTCTCTGTTCGTCTTGAAGGTATCCCTCATCCACT
TACACCCTCTTTCCCTCCCTCCAAGGTGAACTTCCAATTTCCCCTTCCCT
ATCCGTATTCGGACGCCACAGGCAGGATCCCCGTCATCTCCACGCTGCTC
CTCTCGAATTTTAACAGGTTTAGAATTACCACCTGGCCCACCACAATGCA
AATCTTCGCCCTCCCTAGCCGCTCCCCCGCCTCCCTCCTGGCCACTGCCC
CTGTACAGTTTATGCAGCTGGCGCCCCATCAGAAGAGTCAGCCGATGCAG
AGCTTTTTCGATATTTCCAATATCAATGGCGTGGAAGGAGGCGTGTTTAT
CTCCAACGCTATCATATCGGTACGCTAGCTTCATGTCCATGCGCCCGCCC
TCCCTCCCTCCCTCCCTCCTCCCCTCCCTTCCTCCCTCCCGTTCCCCAGG
CCCCGACGAGTCTATGCCCTCGCAATTTTATTTACAAGCGCACTACTTGA
CAACTCATGCATTATTTCCCTTTCAACCCCTCTCTCTTCTCTCTCCCCCC
TCAGGGCGATGTGAACTACATGTACACAACCAGCATCATCCGCGTCCGTG
CCTGGGCCCTGAACTTCATCCCCGTGACGCGCTCCTACAAGAGCGACTGC
ACCATCATGAGGAGGTGGGGCGTCAATCCCGTCACCACCAGCGACTGCTT
TGGACACTTCATACGGTAGTCGCGTCACGGACAGTGAATGCCACGGACTT
GTTGTTGGTCAAGGGGCGAAGGAGGGAGAGATGAAGGGAGGGAGGAAACT
TCTGGAGTATTTGACTGGGAAAAGAGACAGAAAAGAGGATCCAGTGACAT
GACGGAGAGAAGGAGAAAGGAAAAAGAAAAAAGACAGATGAATATGAACG
AGAAGAAATGAGAAGAAAAAGAAGAGGAGGAGGAGGAAAAAAGATGAAGA
AGAAGGAAGGGGAGGAGAAGGGAAAGAAGAAGAAAAAGAAAAATAAGAGA
GAGAATAAGAGGGAGAGGAAGAGGAAGTGAAAGCGAGGAGGACGAAGAGA
GAGAGGAAGAGGACAAAAGTATCTACTGTCGAGAGAGGATGAAAGTAACT
ACTGTTGCCCTTAGCAAGTGGGGCAATGATGCCCTCAATATATAACCAGG
CCAGATGTGCTCACTACCACGTACCTACCGGTGATAGCTGCATTTGGTTG
CCAGGGAGAGACAAAGGGAGGAAGGGGGGACGGAGGGACGGAGGTTATGC
GGCTTTGAAAGCTTCATAACTCTTTTTCCCTGTGTCCTATGGGAGGACAT
ATACCTATGGGAGGACATATACTATTTTACAATTAACTTATGAATTATGT
GAGTGAAGAGAGCGCCAATTATGTATTGATTGAATGAAGACAAAGCAACA
CGTGCAGACAGTTGGGAAAGGATGTCCGGGTGCGACACTTGAAAAAGGGG
CCAGGTTAGCGATTGAGAGAATGTAAGTAAGAGTCAAACGAAGGTGAGAG
AGCGAATGAACTCAGAACGGCGACTGTTCCGCTGGAGAAGGATGCTGCTG
CTGCGGTTGCTGCTACGGCCAGCCCTGTCGCACATCACATGGTGACAGAA
GCGTGGATGCGGAGATCAGCCTTTTGCTCCAGTGCATGAAATCAATGCTC
AAACATCGGGAAGATTGCCGTGGCGTGTCTGTGCTGACTCTCTTGCTTTT
TGATGATGGAAGGGCAAGTTTGATCCGAAGTACTGAGCAGTGAGAGCTAT
ACCAAGTGACATAAAAAAAGTTATTTACATATATGTGGTGAAACACGAAA
AGAATAAAGAGAGAAAGACGACTGAAATGCATGGCTGAACTCTTAAGACG
AAAATATCGTACAATATTGCGT

Coding sequence (CDS) from alignment at chr8:1279896..1283267-

>NO08G04370.1 ID=NO08G04370.1|Name=NO08G04370.1|organism=Nannochloropsis oceanica|type=CDS|length=1137bp|location=Sequence derived from alignment at chr8:1279896..1283267- (Nannochloropsis oceanica)
ATGAGCCACCACGCTAAATTGGTGGACACACAGTCTGTGTCCTTGGGTGC
CATGCCTTCAATCTTGATGCACGTCACACTGAACATCATGTGTCAGTGCC
ACGAAGGATATTTTCGCTTTTCCCTCACATGTATTTACACGTCGATGCAT
GCACTTATTTCCGCCTCGCGTTCTACCCTACCACACAGCCACAAGCAACA
GGTCGGAACAAACCTTGTCCGTCTTCAGACAACAATGTCCTCGCGAAGGC
ACTATTCAGATGAGTTGCCCTCCTCTATGCACGCCCACACCGCTGTCTTC
ACGGATGAGGAGATGGGCGGCGAGAGTAGCAACACCGCCAACACAAAGGT
GAATCCAAACAGCCTTGGCAGCCCTCGGAGCCATCAAAATTATGACGGCA
ACGCCGGCAAGTGGGTGGATGGGCGTTCCTCCCGCCTGCCATGGGACGAC
GCCGACAGGGAGTATTATCGACCCAGTCCAACCCCACGCCATGTGCCATC
AACTACCAACAACTTCGAGATACGGGCCCTTCCGGAGAGAGAACGACGCT
CGGACACAATCTGCGGCATGCCTAAATGGGTGGCTTCCATTGTCTTTCTC
GGTTTTCTTGCTCTAGCCATTACAATTGCGGTATCGGTTATCATGGGTTG
GAACATGGTCGCGCCACGCGTGCAAATGGTGAACTTCCAATTTCCCCTTC
CCTATCCGTATTCGGACGCCACAGGCAGGATCCCCGTCATCTCCACGCTG
CTCCTCTCGAATTTTAACAGGTTTAGAATTACCACCTGGCCCACCACAAT
GCAAATCTTCGCCCTCCCTAGCCGCTCCCCCGCCTCCCTCCTGGCCACTG
CCCCTGTACAGTTTATGCAGCTGGCGCCCCATCAGAAGAGTCAGCCGATG
CAGAGCTTTTTCGATATTTCCAATATCAATGGCGTGGAAGGAGGCGTGTT
TATCTCCAACGCTATCATATCGGGCGATGTGAACTACATGTACACAACCA
GCATCATCCGCGTCCGTGCCTGGGCCCTGAACTTCATCCCCGTGACGCGC
TCCTACAAGAGCGACTGCACCATCATGAGGAGGTGGGGCGTCAATCCCGT
CACCACCAGCGACTGCTTTGGACACTTCATACGGTAG

Synonyms

Publications