NO08G04350.1, NO08G04350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G04350.1
Unique NameNO08G04350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length997
Alignment locationchr8:1270671..1273026 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1270671..1273026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G04350.1 vs.
Match: NP_001093382.1 (uncharacterized protein LOC100101334 [Xenopus laevis]; AAI46637.1 LOC100101334 protein [Xenopus laevis])

HSP 1 Score: 239.2 bits (609), Expect = 6.700e-60
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0 
Query:    1 MADIVKPKVLAEDDQQIHRIRITLTSLNVKNLEKVCDLLKKRALDHNQHLKVAGPVRLPTKTLKITTRKSPCGEGTNTWDRYQMRIHKRIIDLHSASDAVKHITSIVIEPGVEVEITINN 121
            MADIVKPK LAEDDQQIHRIRITLTSLNVKNLEKVCD+LKKRALDHNQHLKVAGPVRLPTKTLKITTRKSPCGEGTNTWDRYQMRIHKRIIDLHSASDAVKHITSIVIEPGVEVEITINN
Sbjct:    1 MADIVKPKALAEDDQQIHRIRITLTSLNVKNLEKVCDVLKKRALDHNQHLKVAGPVRLPTKTLKITTRKSPCGEGTNTWDRYQMRIHKRIIDLHSASDAVKHITSIVIEPGVEVEITINN 120
The following BLAST results are available for this feature:
BLAST of NO08G04350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
NP_001093382.16.700e-6098.33uncharacterized protein LOC100101334 [Xenopus laev... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G04350NO08G04350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G04350.1NO08G04350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G04350.1.cds1NO08G04350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04350.1.cds2NO08G04350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04350.1.cds3NO08G04350.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04350.1.cds4NO08G04350.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G04350.1 ID=NO08G04350.1|Name=NO08G04350.1|organism=Nannochloropsis oceanica|type=mRNA|length=997bp
AAAAGAGAAGAGCGACAGAATGCATGCCGCCCTCGCCTCCACCCTTCCTA
CTGCTTCTTACACAACACAGCACGCATACACATGAGTCTGCTTTAATGTG
CCTGACCATACAGGTGTGACCGGTGGTATGCGGTGTGGTGTTGGTCTTTA
AAGGCGTGAGTGACGACGGTCTCTCTTTCTCCACCTCATCCTCCTTCCTC
CAGCCAAGCAACGGCAGCCGCATAAGCCTCCTCACTCACATCTGCATGCT
CCTTTTCCATCTCTTTCTCGTTCTCATCTCCCTTTGCACATCACACCGCA
CACACATATACAACGGTCTTCATTTCTTTATTAGCCCGCCGGATCAGGTT
ACCGCTGCTGCTTTCGTGCTCCAGCGCCTCGTCCAGCACTCCTTCCTTTT
TTTTCACCTCTCTTTCTTTGAACATGGCCGACATTGTCAAGCCCAAGGTC
CTCGCTGAGGATGACCAGCAGATCCACCGCATCCGCATCACTCTGACATC
CCTGAACGTGAAGAACTTGGAGAAGGTGTGCGACCTCCTCAAGAAACGCG
CCCTCGACCACAACCAGCACCTCAAGGTGGCGGGACCCGTCCGCCTGCCC
ACCAAGACGCTGAAGATCACGACCCGCAAGTCCCCCTGCGGTGAGGGCAC
CAACACGTGGGACCGCTACCAGATGCGCATCCACAAGCGCATCATTGATC
TTCACTCCGCCTCCGATGCTGTCAAGCACATCACGTCCATCGTAATCGAG
CCCGGTGTGGAGGTAGAGATCACCATCAACAACTAAGCCTTGGTAGTGGG
CAGGAATGTGTTTGCACGTGCTTTTGGGTCTGCCTTTCTCTTTCTCCTTC
CCTTTCTTATTCGTTTTAACGAAGGTTGGGGTGGGAGAGCGAGTGAGGCC
AAGGATGTGTGCGGGAGAATCGCGAAGCTTGTTCTGTTTGTGCGGGTAGC
CTGCCGAGGCGCTCGAATGAAAGTTGAAAAGACCAAGAAATAGAAGA
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protein sequence of NO08G04350.1

>NO08G04350.1-protein ID=NO08G04350.1-protein|Name=NO08G04350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MADIVKPKVLAEDDQQIHRIRITLTSLNVKNLEKVCDLLKKRALDHNQHL
KVAGPVRLPTKTLKITTRKSPCGEGTNTWDRYQMRIHKRIIDLHSASDAV
KHITSIVIEPGVEVEITINN*
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mRNA from alignment at chr8:1270671..1273026-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G04350.1 ID=NO08G04350.1|Name=NO08G04350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2356bp|location=Sequence derived from alignment at chr8:1270671..1273026- (Nannochloropsis oceanica)
AAAAGAGAAGAGCGACAGAATGCATGCCGCCCTCGCCTCCACCCTTCCTA
CTGCTTCTTACACAACACAGCACGCATACACATGAGTCTGCTTTAATGTG
CCTGACCATACAGGTGTGACCGGTGGTATGCGGTGTGGTGTTGGTCTTTA
AAGGCGTGAGTGACGACGGTCTCTCTTTCTCCACCTCATCCTCCTTCCTC
CAGCCAAGCAACGGCAGCCGCATAAGCCTCCTCACTCACATCTGCATGCT
CCTTTTCCATCTCTTTCTCGTTCTCATCTCCCTTTGCACATCACACCGCA
CACACATATACAACGGTCTTCATTTCTTTATTAGCCCGCCGGATCAGGTA
CGTTTGGACCCGGGGAATGGATGGGTGGGGGGATGGAATCGTGGAATGAA
ATGGTGATGAACGGCCTGAGAACTCATGCCTCTCGAATTCCTCCATCCCT
CGCTTGACTCAACACAGGTTACCGCTGCTGCTTTCGTGCTCCAGGTACGT
CGAAGGGCATACAGGGTTGGAGGAGGAAGGAATGGGGAATAAAGAGCTGC
CTCCTGCTTATGCCAAAGAGAGGAAGGGGTGGAGGGGGTCCTGAGCGCCT
GCACCATGGGGGACGGGGAGGGGGGGCTGCCTATAGACCTAGGATTAAAA
ACGTTAGTTCAAGGCATATCGTCGCCGGTCCCAGAGGGGCCTCCGTGCTT
CTGATGCGGACTTATAACTACTTCCTGTGTCGATGAGGTCTCTGCTTGCT
GTTAGAGTCTGCGGTGATTGTGGCATGCATGTAGCAGAGGTTAAGAGAAG
GGAGGAAGAGACGGAGGGATGCTTTAAGGTGCTCTTGACAATTCTCGAGA
GTACATTGAGGAGAGTCGTACTTCCTCTTTATAAGGTCTCGTCTTCCGGT
AGGACATGGATGGGAATTTATCACTGATCCCTCCCTTCCGTCCTCCCTCC
GTTCACTCCTCATCGCCATCCTTAACAGCGCCTCGTCCAGCACTCCTTCC
TTTTTTTTCACCTCTCTTTCTTTGAACATGGCCGACATTGTCAAGCCCAA
GGTCCTCGCTGAGGATGACCAGCAGGTAGGAAGTGAGGGAGGGAGAGGAG
GGGGGGAAGAAAGGAAAGGAATCGAGGGAGTAGTAGGAAAGTGATGGGAA
GCGGAGGATTATGCTTTTTAAGACGTGGTTTCCTCGCACGACCGATACGC
GCGGCGAATGAAAATGACGGATGAAAAGGGTTGGGGCAATGGTGGACACG
GCCTCGCCGTGTTCCTGCCTCTGGAGGGGCATGTGCTCGACGACAATTAC
CATGGGCGATTCCCGCCACTAACCTCCACCCCCCGCCCTCCCTGATCCCT
CAGATCCACCGCATCCGCATCACTCTGACATCCCTGAACGTGAAGAACTT
GGAGAAGGTGTGCGACCTCCTCAAGAAACGCGCCCTCGACCACAACCAGC
ACCTCAAGGTGGCGGGACCCGTCCGGTAAGAGGGGAGGAAGGGAGAGAGA
AAGAGAGGAAAAGAGGGTAGGAGCGATGAGTGAATGGGAGGGCTGAGGGG
CTATGAATGCGTTGACTGCTCGAAATCGGAAGCTTGCACTTTGCTAGCCC
CAAGTCGAAGAGGCCCAAGACAACACGGCCAAGGTCAGACTGGCACTCGA
TGGCACGAACGCGGATTCAACATTACTCCGTGGCACCCTATTTCCTTCCC
TCCCTTCCTCCCTCTCAGCCTGCCCACCAAGACGCTGAAGATCACGACCC
GCAAGTCCCCCTGCGGTGAGGGCACCAACACGTGGGACCGCTACCAGGTA
CTTGCCTTCGAGGAGGACAAAACGAGGGGAGGACGATGAGGGAAGACAGG
ATCCATCAGACTTTGTGCAGCGGGTACTGATTGTCGCTTGCCTTCTCGGT
TTTCTGACACTGGCGAATAAGCCTCGGAAGAAGCTTCTCTTTACATGCCC
ACTCACTAACCCCTCCCTCCCTCCCCCCACCCTTTCCCCCCCTCCCTCTC
TCCTTCCCTCTCTCCATTCCTCTTTCCACAGATGCGCATCCACAAGCGCA
TCATTGATCTTCACTCCGCCTCCGATGCTGTCAAGCACATCACGTCCATC
GTAATCGAGCCCGGTGTGGAGGTAGAGATCACCATCAACAACTAAGCCTT
GGTAGTGGGCAGGAATGTGTTTGCACGTGCTTTTGGGTCTGCCTTTCTCT
TTCTCCTTCCCTTTCTTATTCGTTTTAACGAAGGTTGGGGTGGGAGAGCG
AGTGAGGCCAAGGATGTGTGCGGGAGAATCGCGAAGCTTGTTCTGTTTGT
GCGGGTAGCCTGCCGAGGCGCTCGAATGAAAGTTGAAAAGACCAAGAAAT
AGAAGA
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Coding sequence (CDS) from alignment at chr8:1270671..1273026-

>NO08G04350.1 ID=NO08G04350.1|Name=NO08G04350.1|organism=Nannochloropsis oceanica|type=CDS|length=363bp|location=Sequence derived from alignment at chr8:1270671..1273026- (Nannochloropsis oceanica)
ATGGCCGACATTGTCAAGCCCAAGGTCCTCGCTGAGGATGACCAGCAGAT
CCACCGCATCCGCATCACTCTGACATCCCTGAACGTGAAGAACTTGGAGA
AGGTGTGCGACCTCCTCAAGAAACGCGCCCTCGACCACAACCAGCACCTC
AAGGTGGCGGGACCCGTCCGCCTGCCCACCAAGACGCTGAAGATCACGAC
CCGCAAGTCCCCCTGCGGTGAGGGCACCAACACGTGGGACCGCTACCAGA
TGCGCATCCACAAGCGCATCATTGATCTTCACTCCGCCTCCGATGCTGTC
AAGCACATCACGTCCATCGTAATCGAGCCCGGTGTGGAGGTAGAGATCAC
CATCAACAACTAA
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Synonyms
Publications