NO08G04330.1, NO08G04330.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G04330.1
Unique Name	NO08G04330.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2252
Alignment location	chr8:1265728..1269140 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:1265728..1269140 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO08G04330.1 vs.
Match: EWM26893.1 (cellulase 2 [Nannochloropsis gaditana])

HSP 1 Score: 737.3 bits (1902), Expect = 2.900e-209
Identity = 347/445 (77.98%), Postives = 388/445 (87.19%), Query Frame = 0

Query:    1 MPSLSALLRLATQGALALLPSSAPQGTTTNAAITTTAATPATPAITPSLRGLGHQK-TVAADSPIDLGTGKLTWTGTHKEIRVNGHSWKLKGLSWFGLEVGDSNVLLGLNRRSLDEILQFLVDNNFNAIRIPFSTKWALDYDSTVRGSFRDGGIDGQLSRRDFLNKVISRAADYKILVMLDSHRLDDQSIPELWYSPEYPYEAMLQAWDTILGDVKHHWNVFAIDLKNEPHGLATWGTGDESTDWNTAAEKIGAHLLEKHPEFTGLVFVEGLGYSIEFESIKAHPINFGKREWNDRLVYSPHQYGPSVTGDEHFKGYVNFPDSQLSEWERCWGFIEETTGHACVLGEWGGQYDSYHNDKDVVWQNRFAKYLVEKCLSDQFVWDLNPESGDTGGVLKSNWWDEEEAKLALYHTVQPHPSWLYKEGDHFYLEPGKYANPKCDPNNKR 445
            M S+S L+RLATQG LALLP+S+P+G+ T+A++ +     AT ++TP LRGL +   T A   PIDLG  +LTWTGT+KE+RVNG ++ LKGLSWFGLEVGDSN+LLGLN R LDEILQFLVDNNFNAIR+PFSTKWALDYD+ VRG FRDG I+ QLSRR FLNK I RAAD+KILVMLDSHRL+DQ IPELWYS EY  E ML AWD +LGD+KHHWN+FAIDLKNEPHG ATWG+G+ +TDWNTAAEKIG HLL KHPEF GLVFVEGLGYSIEFE IK HPI+FGK E+N+RLVYSPHQYGPSVTGD HF GYVNFP SQLSEWERCWGFIEE TGHACVLGEWGG+YDSYHNDKD+VWQ+RFAKYLVEKC+SDQFVWDLNPESGDTGGVLK+NWWD EE KLALY TVQPHPSWL+KEGD FYLEPG+YANPKCDP NK+
Sbjct:    1 MASISNLMRLATQGVLALLPTSSPEGSITDASLAS-----ATNSVTPLLRGLAYPSFTKAMHGPIDLGKEELTWTGTNKELRVNGKTFHLKGLSWFGLEVGDSNMLLGLNNRGLDEILQFLVDNNFNAIRVPFSTKWALDYDTGVRGYFRDGDIN-QLSRRQFLNKFIERAADFKILVMLDSHRLNDQEIPELWYSQEYTQEDMLAAWDILLGDLKHHWNLFAIDLKNEPHGAATWGSGNAATDWNTAAEKIGKHLLTKHPEFKGLVFVEGLGYSIEFEKIKTHPIDFGKPEFNERLVYSPHQYGPSVTGDLHFAGYVNFPASQLSEWERCWGFIEEKTGHACVLGEWGGKYDSYHNDKDMVWQDRFAKYLVEKCMSDQFVWDLNPESGDTGGVLKANWWDAEEKKLALYDTVQPHPSWLWKEGDTFYLEPGEYANPKCDPYNKK 439

The following BLAST results are available for this feature:

BLAST of NO08G04330.1 vs.

BLAST of NO08G04330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26893.1	2.900e-209	77.98	cellulase 2 [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G04330	NO08G04330	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G04330.1	NO08G04330.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G04330.1.cds1	NO08G04330.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G04330.1.cds2	NO08G04330.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G04330.1.cds3	NO08G04330.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G04330.1.cds4	NO08G04330.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G04330.1.cds5	NO08G04330.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G04330.1.cds6	NO08G04330.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:1265728..1269140+
coding sequence from alignment at chr8:1265728..1269140+

mRNA sequence

>NO08G04330.1 ID=NO08G04330.1|Name=NO08G04330.1|organism=Nannochloropsis oceanica|type=mRNA|length=2252bp
AGAAAGTCCAAAAGATCGCTGTCTTGCTTGAATTACACCAGGGAGTCATA
AGCGTTGTCCGCTTTGACTTTTCTGGCTCACGATGGCTCGCTGCTATGGA
CCTTCTCATTTCCCTTGCTGTCTGTCCTTCTTGTCTTGGTTTGGCCCATT
GCAGTGTACATGTATACATCTCTCTCTTTTGTTCCATGAGTGGTAAAGTT
TCACGCTCCCATCGCACCAGGAAGGCATCCACACGATTATCCTCGTTGAT
TGAGCATAGTGCGAGGATTTAGCAGACCGATGATAGGCGCCATACATAAC
GAGATATCTCTTTGTCCTTCCTCACACCACCTATTCTCACGACCTACCTC
AATCCGTGCACTGACTGACATAATATCCATTTTCACACAGACATCGGCTC
TACCATCGCCTACACAGCATTACTCATTTTATCAGCACCCACCCACGACG
CTATACACAAACCATGCCCAGCCTATCCGCCTTGCTGCGCCTCGCGACCC
AAGGGGCCTTGGCCCTGCTCCCTTCCTCTGCCCCCCAAGGCACCACCACC
AACGCCGCCATCACAACAACTGCGGCAACTCCAGCAACACCAGCGATCAC
GCCATCTCTCCGCGGTCTAGGCCACCAAAAGACGGTTGCGGCAGACAGTC
CTATCGATCTGGGGACCGGGAAGTTGACTTGGACAGGCACACACAAGGAG
ATTCGTGTGAATGGACACAGCTGGAAGCTTAAAGGACTGTCATGGTTCGG
TCTTGAGGTCGGCGACTCGAACGTGCTCCTAGGCCTCAACAGGCGGAGCC
TGGATGAGATCTTGCAATTCCTGGTCGACAACAACTTCAACGCCATCCGC
ATCCCCTTCTCCACCAAGTGGGCCTTGGACTACGATAGCACTGTGCGAGG
TTCTTTCCGGGACGGGGGCATTGATGGCCAGCTGTCTCGCCGTGACTTTT
TGAATAAGGTCATTTCCCGGGCTGCGGATTACAAGATTCTGGTCATGCTC
GACAGCCACCGTCTGGACGATCAGTCCATCCCCGAACTGTGGTACTCGCC
GGAGTACCCGTACGAGGCGATGTTGCAGGCCTGGGACACCATCTTGGGGG
ATGTAAAGCATCACTGGAATGTGTTTGCCATCGACTTGAAAAATGAGCCC
CACGGCCTGGCCACCTGGGGCACTGGCGACGAGTCCACGGACTGGAACAC
GGCCGCGGAGAAAATCGGCGCGCATTTGTTAGAGAAGCACCCGGAGTTCA
CGGGGTTGGTTTTTGTTGAGGGCCTGGGATACTCAATCGAGTTTGAGTCG
ATCAAGGCCCACCCGATTAATTTTGGGAAGAGGGAGTGGAACGACCGGCT
GGTCTACTCGCCTCATCAGTACGGCCCGTCGGTGACAGGCGATGAGCACT
TCAAGGGGTACGTCAACTTCCCCGACTCGCAGCTGAGTGAGTGGGAGCGC
TGCTGGGGCTTCATCGAGGAGACGACAGGACACGCCTGCGTGCTGGGGGA
GTGGGGCGGGCAGTACGACAGCTACCACAACGACAAGGACGTGGTGTGGC
AGAATCGGTTTGCCAAATATCTGGTGGAGAAATGCCTGAGCGATCAGTTC
GTGTGGGACCTGAACCCGGAGAGTGGAGATACGGGAGGAGTGTTGAAATC
CAACTGGTGGGATGAGGAGGAAGCGAAGCTTGCGCTGTATCACACGGTGC
AGCCTCATCCGTCCTGGTTGTACAAAGAGGGCGACCACTTTTATTTGGAG
CCGGGGAAGTACGCGAATCCAAAGTGTGACCCCAACAACAAGAGGCAGTG
AGGATGAGGGAGGGAGAGAGAGAGGGAGGGTTAGGAAGTAGCAGGTGTGC
ATTGGAGATGCGCCTTGGTACAATTTTATTTGCGGGAAAAAGGGAGGAAG
GGAGGAGGGGAGTGTGTCTATCCTATCACTGAGGGCGGCTTGAATGGCTG
CTTTGTATTTCTATGTTTGCATAAAGGGAAAGCAAGTCATTCACTCTAAC
CCTTGCAAACCGAGAAGGGAAGGAGGGATTGGTCTACGTGAGGTATGTAA
GCGTGTAAACCCACTGAGTAGGGCTGACGTATTGCAACAATGAGAAACAA
CAGCAGCAGTAGCAGCAGCGATAAGAGCAGTAGATTCAGCAGTAGCAAAA
GTACTTCGGCAAGCCAGAAGAACAGGAATGCCAAAGGCAACAATCAAAGC
ACTAGCCCATCCACGGCAAAGACCAGTGTATCTCACCCAGCTTCACGTTG
AC

protein sequence of NO08G04330.1

>NO08G04330.1-protein ID=NO08G04330.1-protein|Name=NO08G04330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=446bp
MPSLSALLRLATQGALALLPSSAPQGTTTNAAITTTAATPATPAITPSLR
GLGHQKTVAADSPIDLGTGKLTWTGTHKEIRVNGHSWKLKGLSWFGLEVG
DSNVLLGLNRRSLDEILQFLVDNNFNAIRIPFSTKWALDYDSTVRGSFRD
GGIDGQLSRRDFLNKVISRAADYKILVMLDSHRLDDQSIPELWYSPEYPY
EAMLQAWDTILGDVKHHWNVFAIDLKNEPHGLATWGTGDESTDWNTAAEK
IGAHLLEKHPEFTGLVFVEGLGYSIEFESIKAHPINFGKREWNDRLVYSP
HQYGPSVTGDEHFKGYVNFPDSQLSEWERCWGFIEETTGHACVLGEWGGQ
YDSYHNDKDVVWQNRFAKYLVEKCLSDQFVWDLNPESGDTGGVLKSNWWD
EEEAKLALYHTVQPHPSWLYKEGDHFYLEPGKYANPKCDPNNKRQ*

mRNA from alignment at chr8:1265728..1269140+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G04330.1 ID=NO08G04330.1|Name=NO08G04330.1|organism=Nannochloropsis oceanica|type=mRNA|length=3413bp|location=Sequence derived from alignment at chr8:1265728..1269140+ (Nannochloropsis oceanica)
AGAAAGTCCAAAAGATCGCTGTCTTGCTTGAATTACACCAGGGAGTCATA
AGCGTTGTCCGCTTTGACTTTTCTGGCTCACGATGGCTCGCTGCTATGGA
CCTTCTCATTTCCCTTGCTGTCTGTCCTTCTTGTCTTGGTTTGGCCCATT
GCAGTGTACATGTATACATCTCTCTCTTTTGTTCCATGAGTGGTAAAGTT
TCACGCTCCCATCGCACCAGGAAGGCATCCACACGATTATCCTCGTTGAT
TGAGCATAGTGCGAGGATTTAGCAGACCGATGATAGGCGCCATACATAAC
GAGATATCTCTTTGTCCTTCCTCACACCACCTATTCTCACGACCTACCTC
AATCCGTGCACTGACTGACATAATATCCATTTTCACACAGACATCGGCTC
TACCATCGCCTACACAGCATTACTCATTTTATCAGCACCCACCCACGACG
CTATACACAAACCATGCCCAGCCTATCCGCCTTGCTGCGCCTCGCGACCC
AAGGGGCCTTGGCCCTGCTCCCTTCCTCTGCCCCCCAAGGCACCACCACC
AACGCCGCCATCACAACAACTGCGGCAACTCCAGCAACACCAGCGATCAC
GCCATCTCTCCGCGGTCTAGGCCACCAAAAGACGGTTGCGGCAGACAGTC
CTATCGATCTGGGGACCGGGAAGTTGACTTGGACAGGCACACACAAGGAG
ATTCGTGTGAATGGACACAGCTGGAAGCTTAAAGGACTGTCATGGTTCGG
TCTTGAGGTATGTTTGTATGAATCTCACTCAACAGCACTCAACAGAAGCG
TAATGGTTTGACTTATAAAATCTTGTTTGTACCGTCTGTCACCGCCAGGG
AGACTTTCCCCTCTGCAGGGCTTCCCTCCTGTCCCTCTCCCCCTATTTCC
TCTGCCTCCACGGTGGGCATCCCACAGCTCTCATCCAAATTTCGAGTATT
CTAGGCGTAACTCACAACCGTTTCACTAAATTTATTGACATCTCCCACTC
CCTCCCGCCTTCTTTTTAGGTCGGCGACTCGAACGTGCTCCTAGGCCTCA
ACAGGCGGAGCCTGGATGAGATCTTGCAATTCCTGGTCGACAACAACTTC
AACGCCATCCGCATCCCCTTCTCCACCAAGTGGGCCTTGGACTACGATAG
CACTGTGCGAGGTTCTTTCCGGGACGGGGGCATTGATGGCCAGCTGTCTC
GCCGTGACTTTTTGAATAAGGTCATTTCCCGGGCTGCGGATTACAAGATT
CTGGTCATGCTCGACAGCCACCGTGAGTACTTGCTCCTGGTTGCCGAGAA
CGTCTTAGTGGGGCTATGGCTGTGCATTCTTGAAGACAGAGGAGTCTCTT
GCAAAAAGAAAAGGCATGGCACCACGACTAGTAACATTTCCCCCTCATTC
CTCCCTCTCTCCCCACCCCCTTTGCCCTCTTCCCCAACACACAGGTCTGG
ACGATCAGTCCATCCCCGAACTGTGGTACTCGCCGGAGTACCCGTACGAG
GCGATGTTGCAGGCCTGGGACACCATCTTGGGGGATGTAAAGCATCACTG
GAATGTGTTTGCCATCGGTGAGAGGGGAGGGAGGGAGGGAAGAAGGAGGG
GAACGCAGTGCGCGGTTTGTAATTTTAGGCAGAAAAAGCCTAGTTATTTC
TCCTTTCCTCTCTCTTTGCGTACATCTATTAATGCTCCCTATCTCTTAAA
CTCATACGACCTTTCATGCCTCCCTGACATACTACATTTAGACTTGAAAA
ATGAGCCCCACGGCCTGGCCACCTGGGGCACTGGCGACGAGTCCACGGAC
TGGAACACGGCCGCGGAGAAAATCGGCGCGCATTTGTTAGGTGGGTACAC
GAATTAATGAAGCATCTTGCTTCCTTCTTTCTCTCTCCTACACAAACACC
AAAGGATGATTGAAAATCTTTCTCTCTTTATGTCTATTATTGAGTAAGTG
TGTGTGTGTGTCTGTGTCTGTGTCTGTGTCTGTGTTTCTGTGTCTCTGTG
TCTCTGTGTCTCTGTGTCTCTGTGTCTCTGTGTGTCTGTGTGTCTGTGTG
TCTGTGTGTCTCTGTGTGTCTGTGTGTGTGTGCATGTGTGTCTCTGTGTG
TCTCTGTGTGCCTGCGTGTCTGTGTGTCTGTGTGTGCTTGTGTGTCTCTG
TGTGTGTATGTGTGTGTATGTGTGATCAGAGCCTCGTACGTTTTATGTCT
TCGTGTCTTACCTTCTTTTTCACTCCCCCATCTCCAAACCGACGACAAAC
AAACAGAGAAGCACCCGGAGTTCACGGGGTTGGTTTTTGTTGAGGGCCTG
GGATACTCAATCGAGTTTGAGTCGATCAAGGCCCACCCGATTAATTTTGG
GAAGAGGGAGTGGAACGACCGGCTGGTCTACTCGCCTCATCAGTACGGCC
CGTCGGTGACAGGTAAGGAAGAGAAAGAGAGGGAGGGAGCGAGCAAGCGA
GAGGGAGGGAGAGAGGGAGAAAAGGTGGGCGCTCTGAAGAATAAGGGGAG
GGGCGAATGTGCATGTCATTAACTATCCAACCCGTGCTTTCCCCCCCAGG
CGATGAGCACTTCAAGGGGTACGTCAACTTCCCCGACTCGCAGCTGAGTG
AGTGGGAGCGCTGCTGGGGCTTCATCGAGGAGACGACAGGACACGCCTGC
GTGCTGGGGGAGTGGGGCGGGCAGTACGACAGCTACCACAACGACAAGGA
CGTGGTGTGGCAGAATCGGTTTGCCAAATATCTGGTGGAGAAATGCCTGA
GCGATCAGTTCGTGTGGGACCTGAACCCGGAGAGTGGAGATACGGGAGGA
GTGTTGAAATCCAACTGGTGGGATGAGGAGGAAGCGAAGCTTGCGCTGTA
TCACACGGTGCAGCCTCATCCGTCCTGGTTGTACAAAGAGGGCGACCACT
TTTATTTGGAGCCGGGGAAGTACGCGAATCCAAAGTGTGACCCCAACAAC
AAGAGGCAGTGAGGATGAGGGAGGGAGAGAGAGAGGGAGGGTTAGGAAGT
AGCAGGTGTGCATTGGAGATGCGCCTTGGTACAATTTTATTTGCGGGAAA
AAGGGAGGAAGGGAGGAGGGGAGTGTGTCTATCCTATCACTGAGGGCGGC
TTGAATGGCTGCTTTGTATTTCTATGTTTGCATAAAGGGAAAGCAAGTCA
TTCACTCTAACCCTTGCAAACCGAGAAGGGAAGGAGGGATTGGTCTACGT
GAGGTATGTAAGCGTGTAAACCCACTGAGTAGGGCTGACGTATTGCAACA
ATGAGAAACAACAGCAGCAGTAGCAGCAGCGATAAGAGCAGTAGATTCAG
CAGTAGCAAAAGTACTTCGGCAAGCCAGAAGAACAGGAATGCCAAAGGCA
ACAATCAAAGCACTAGCCCATCCACGGCAAAGACCAGTGTATCTCACCCA
GCTTCACGTTGAC

Coding sequence (CDS) from alignment at chr8:1265728..1269140+

>NO08G04330.1 ID=NO08G04330.1|Name=NO08G04330.1|organism=Nannochloropsis oceanica|type=CDS|length=1338bp|location=Sequence derived from alignment at chr8:1265728..1269140+ (Nannochloropsis oceanica)
ATGCCCAGCCTATCCGCCTTGCTGCGCCTCGCGACCCAAGGGGCCTTGGC
CCTGCTCCCTTCCTCTGCCCCCCAAGGCACCACCACCAACGCCGCCATCA
CAACAACTGCGGCAACTCCAGCAACACCAGCGATCACGCCATCTCTCCGC
GGTCTAGGCCACCAAAAGACGGTTGCGGCAGACAGTCCTATCGATCTGGG
GACCGGGAAGTTGACTTGGACAGGCACACACAAGGAGATTCGTGTGAATG
GACACAGCTGGAAGCTTAAAGGACTGTCATGGTTCGGTCTTGAGGTCGGC
GACTCGAACGTGCTCCTAGGCCTCAACAGGCGGAGCCTGGATGAGATCTT
GCAATTCCTGGTCGACAACAACTTCAACGCCATCCGCATCCCCTTCTCCA
CCAAGTGGGCCTTGGACTACGATAGCACTGTGCGAGGTTCTTTCCGGGAC
GGGGGCATTGATGGCCAGCTGTCTCGCCGTGACTTTTTGAATAAGGTCAT
TTCCCGGGCTGCGGATTACAAGATTCTGGTCATGCTCGACAGCCACCGTC
TGGACGATCAGTCCATCCCCGAACTGTGGTACTCGCCGGAGTACCCGTAC
GAGGCGATGTTGCAGGCCTGGGACACCATCTTGGGGGATGTAAAGCATCA
CTGGAATGTGTTTGCCATCGACTTGAAAAATGAGCCCCACGGCCTGGCCA
CCTGGGGCACTGGCGACGAGTCCACGGACTGGAACACGGCCGCGGAGAAA
ATCGGCGCGCATTTGTTAGAGAAGCACCCGGAGTTCACGGGGTTGGTTTT
TGTTGAGGGCCTGGGATACTCAATCGAGTTTGAGTCGATCAAGGCCCACC
CGATTAATTTTGGGAAGAGGGAGTGGAACGACCGGCTGGTCTACTCGCCT
CATCAGTACGGCCCGTCGGTGACAGGCGATGAGCACTTCAAGGGGTACGT
CAACTTCCCCGACTCGCAGCTGAGTGAGTGGGAGCGCTGCTGGGGCTTCA
TCGAGGAGACGACAGGACACGCCTGCGTGCTGGGGGAGTGGGGCGGGCAG
TACGACAGCTACCACAACGACAAGGACGTGGTGTGGCAGAATCGGTTTGC
CAAATATCTGGTGGAGAAATGCCTGAGCGATCAGTTCGTGTGGGACCTGA
ACCCGGAGAGTGGAGATACGGGAGGAGTGTTGAAATCCAACTGGTGGGAT
GAGGAGGAAGCGAAGCTTGCGCTGTATCACACGGTGCAGCCTCATCCGTC
CTGGTTGTACAAAGAGGGCGACCACTTTTATTTGGAGCCGGGGAAGTACG
CGAATCCAAAGTGTGACCCCAACAACAAGAGGCAGTGA

Synonyms

Publications