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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:1255318..1258765 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G04300.2 vs.
Match: EWM26905.1 (protein-l-isoaspartate(d-aspartate) o-methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 377.1 bits (967), Expect = 8.100e-101 Identity = 196/268 (73.13%), Postives = 223/268 (83.21%), Query Frame = 0
Query: 110 PWMVLGWSLSVLATIADGFHSPRRKINSCSSAFIVL--LLLRASIVM-AWFCSGRSNTELVQRLRSANVITSERVKEVMLRVDRANYAPNSAYEDSPQYLGYEQTISAPHMHAHALELLKDKLVPGATAMDVGCGSGYLTVAMGRMVEPKGRVVGIDIVKPLVALARKNIAKADGDLLEKGVVTLECQTGWEGDKDKGPYDAIHVGAAAASIPRSLVEQLKVGGIMILPVGPEGGNQALIRVEKVSRQTRNEESAVLRAVLILPYLPV 375
PWMV G+SLS +A D + R I A +V L +RAS+ M AWFCSGRSNTELV RLR++NVITSERVKEVMLRVDR NYAPN AY+DSPQYLGYEQTISAPHMHAHALELLK++LVPGAT +DVGCGSGYLT AM RMVEPKGRVVGIDIVKPLV+LA+ NI KAD DLL KGVVTLEC+TGWEGDK+KGPYDAIHVGAAA+S+PRSLVEQLKVGGIMI+PVGPEGGNQ L RV+K+ Q EE+ V + +L + Y+P+
Sbjct: 9 PWMVAGFSLSSIAFPRDSY---RFNIRRGRHATVVSFPLFVRASVAMCAWFCSGRSNTELVHRLRASNVITSERVKEVMLRVDRGNYAPNFAYDDSPQYLGYEQTISAPHMHAHALELLKERLVPGATVLDVGCGSGYLTAAMARMVEPKGRVVGIDIVKPLVSLAKNNIEKADDDLLTKGVVTLECKTGWEGDKEKGPYDAIHVGAAASSVPRSLVEQLKVGGIMIIPVGPEGGNQVLCRVQKIKDQGPIEETFVAQELLGVRYVPL 273
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G04300.2 ID=NO08G04300.2|Name=NO08G04300.2|organism=Nannochloropsis oceanica|type=mRNA|length=2196bp GCACAAACGCCAGCCTTCCTCTGTCGTGTGGGGAATTGGTATGAGAACTT GGAGGGGAGGTGGTGGAGCTGCTTGACTGGCATCCAACTACGGCCAGAGA CAAAGTCATGCTTGACAAAAACCAAACCATGGACGGGACACACTCACAGG CTCCATGCTCGTGGTGGGTTTGGGGTAGAGGACATGCTGCTGTCAAAAAA AAAAGAACCGTCGCCAAGCCGTTGGCGTTTTTGGCGGTGCAATGAAGGAA GCCGCGCGGAGGCTGCGTGCTGTGAAGCAGGCAGAGAGGATAGGGCAACT TGACACTGAATCATGCACGTTGTATAAATATGACTGGTCGTCAGGAGCGT GTGTGTGGTGCTGTAAAGAAAATTGCTTGCCAAGGAAGACACTTCACGAA TTGCAGGCATGTCACACAAGCCCCACTTCTCAACACATGTGTTCTGTTCT GCCAAGAAAGGCCACAACTATGCGCGCGCCAGCTGCAGGCACAACATGCG AGGCAAGGCATCTTTACCACCAGACTTTCAGCACTCTCATTCTGTATTTT GTTGAGGCGTGGAGCCTGGACTTTTCAACCACTTTCTTCCCTTTACCCCC CAATCCCGCCCCACCCATCCAGCATCCAGACTATCTTATTCGTAGGGATT TCAACACCGTGGATGGTCCTTGGCTGGTCGTTGTCCGTTCTTGCCACTAT CGCAGACGGGTTCCACTCCCCTCGCCGCAAAATCAACAGTTGTTCTTCCG CCTTTATTGTTCTTCTCCTTCTTCGAGCCTCGATAGTGATGGCTTGGTTC TGTTCCGGCCGCAGCAACACGGAGCTTGTCCAGCGCCTGCGTTCTGCCAA TGTCATAACTAGTGAGCGGGTGAAGGAGGTCATGCTCCGCGTGGACAGGG CGAACTACGCCCCGAATTCAGCCTACGAGGACTCCCCGCAGTACCTTGGC TACGAGCAGACCATTTCCGCGCCGCACATGCACGCGCACGCCTTGGAGCT GCTGAAGGATAAGCTGGTTCCAGGGGCGACTGCCATGGACGTGGGCTGCG GATCAGGCTATCTTACAGTGGCAATGGGCCGAATGGTGGAGCCGAAGGGG CGCGTGGTGGGTATCGATATCGTCAAGCCCCTCGTTGCTCTCGCCCGCAA GAACATTGCCAAGGCCGATGGGGACTTGCTGGAGAAAGGAGTGGTCACCC TGGAATGCCAGACAGGCTGGGAGGGCGACAAAGACAAGGGGCCTTACGAC GCTATCCACGTGGGTGCGGCGGCTGCTTCCATCCCTCGCTCCCTCGTTGA ACAGCTCAAGGTCGGCGGCATTATGATCCTCCCCGTGGGTCCTGAGGGCG GCAATCAAGCCCTTATCCGGGTGGAGAAGGTGAGCCGACAGACGCGGAAC GAAGAGAGCGCAGTTCTTAGGGCTGTACTCATCCTTCCCTACCTGCCTGT TTCGCTTCCTTCCTCCATCCCTTCCCTCCCCTCCCCCTTTCCTCCCCCTT CCTCTCTCCCTCTGACCCATTTTTCAGATCAAAGACCACGGTCCCATCGA GGAGACGTATGTGGCACAGGAGCTGCTGGGAGTGCGCTATGTCCCGCTGG TCCGTCAGAGCCCTTACACCTAGAGGAGGGAGGGAGGGGGGGAGGGAGCG AGTGTGTTGTAGACTGGTTGAGGGAGGAGAGAAGCATGGCATGGAGGGGA GATAGAGGGGATGGGGCAAGGGACATTGCCCCACGTTACACGAGACGAGT CACATGTGCATAGCCAGGTGTTCAAAAGATGACGGGAATTAAGCGGGGGA GAAGTAGGCCGCAGTGGCAGGAAAGACAAGCGTAAGGGTATGTTGTATGC GTGTTTATGCATGTGCGTAAGCCCACGCATGTGTGAATGTGTCTGTATGT TTGTGTGCGTGACGATTTGTCGTATGTCTGCTTATCTGTCTACCTGTGTC GCTATGTGTCGGTCTATGTCGGGGGGAGGCAGTGTATGGTTAGGGGAGTT GAGAGTCTGATTCATCGAGGCTTCAGGGAATAGAAGAGGAAAAACGAGCC TGGAGGAAGAGGGGGGCGAACGAGGGAGCAGAGAACGCATACAGACACGG GTTGTGACCGAACATATAGAAAAAGACGAGCAAGTCAGCTGGGGGAGACG TTTATGAAAAGAAAAAAAAGAAACCCTCAGTGAGTGGCAACCCTAC back to topprotein sequence of NO08G04300.2 >NO08G04300.2-protein ID=NO08G04300.2-protein|Name=NO08G04300.2|organism=Nannochloropsis oceanica|type=polypeptide|length=478bp MTGRQERVCGAVKKIACQGRHFTNCRHVTQAPLLNTCVLFCQERPQLCAR QLQAQHARQGIFTTRLSALSFCILLRRGAWTFQPLSSLYPPIPPHPSSIQ TILFVGISTPWMVLGWSLSVLATIADGFHSPRRKINSCSSAFIVLLLLRA SIVMAWFCSGRSNTELVQRLRSANVITSERVKEVMLRVDRANYAPNSAYE DSPQYLGYEQTISAPHMHAHALELLKDKLVPGATAMDVGCGSGYLTVAMG RMVEPKGRVVGIDIVKPLVALARKNIAKADGDLLEKGVVTLECQTGWEGD KDKGPYDAIHVGAAAASIPRSLVEQLKVGGIMILPVGPEGGNQALIRVEK VSRQTRNEESAVLRAVLILPYLPVSLPSSIPSLPSPFPPPSSLPLTHFSD QRPRSHRGDVCGTGAAGSALCPAGPSEPLHLEEGGRGGGSECVVDWLREE RSMAWRGDRGDGARDIAPRYTRRVTCA* back to topmRNA from alignment at chr8:1255318..1258765- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G04300.2 ID=NO08G04300.2|Name=NO08G04300.2|organism=Nannochloropsis oceanica|type=mRNA|length=3448bp|location=Sequence derived from alignment at chr8:1255318..1258765- (Nannochloropsis oceanica) GCACAAACGCCAGCCTTCCTCTGTCGTGTGGGGAATTGGTATGAGAACTT
GGAGGGGAGGTGGTGGAGCTGCTTGACTGGCATCCAACTACGGCCAGAGA
CAAAGTCATGCTTGACAAAAACCAAACCATGGACGGGACACACTCACAGG
CTCCATGCTCGTGGTGGGTTTGGGGTAGAGGACATGCTGCTGTCAAAAAA
AAAAGAACCGTCGCCAAGCCGTTGGCGTTTTTGGCGGTGCAATGAAGGAA
GCCGCGCGGAGGCTGCGTGCTGTGAAGCAGGCAGAGAGGATAGGGCAACT
TGACACTGAATCATGCACGTTGTATAAATATGACTGGTCGTCAGGAGCGT
GTGTGTGGTGCTGTAAAGAAAATTGCTTGCCAAGGAAGACACTTCACGAA
TTGCAGGCATGTCACACAAGCCCCACTTCTCAACACATGTGTTCTGTTCT
GCCAAGAAAGGCCACAACTATGCGCGCGCCAGCTGCAGGCACAACATGCG
AGGCAAGGCATCTTTACCACCAGACTTTCAGCACTCTCATTCTGTATTTT
GTTGAGGCGTGGAGCCTGGACTTTTCAACCACTTTCTTCCCTTTACCCCC
CAATCCCGCCCCACCCATCCAGCATCCAGACTATCTTATTCGTAGGGATT
TCAACACCGTGGATGGTCCTTGGCTGGTCGTTGTCCGTTCTTGCCACTAT
CGCAGACGGGTTCCACTCCCCTCGCCGCAAAATCAACAGTTGTTCTTCCG
CCTTTATTGTTCTTCTCCTTCTTCGAGCCTCGATAGTGATGGCTTGGTTC
TGTTCCGGCCGCAGCAACACGGAGCTTGTCCAGCGCCTGCGTTCTGCCAA
TGTCATAACTAGTGAGCGGGTGAAGGAGGTATGTGGGAGTCCAGAGCTAG
GATTGGGAACGGCGGAAAAAAGGGGTAACGGGTACGACTGGCCGACAGCA
AGGGGATATGTACTTTCGAGCAATGATTTGATTGTACGACAACGTGGAAG
AAATCAATTGGCATGCTCCTATCTGACAGCCTTCCTCTTCTCTCTCGTTT
AATTCCTTATGAGGTCATGCTCCGCGTGGACAGGGCGAACTACGCCCCGA
ATTCAGCCTACGAGGACTCCCCGCAGTACCTTGGCTACGAGCAGACCATT
TCCGCGCCGCACATGCACGCGCACGCCTTGGAGCTGCTGAAGGATAAGCT
GGTTCCAGGGGCGACTGTACGTATGCTCCTTGTTTACTTTTTAAATTGTA
GTTCTTCCTCTCTCTGGGTCGAATGCGCCTTTAGCGATCTGGTGGCTGTT
TACATGCAAATTACCCTGACTCTCCTTTCTGCCTTCCCTCCCTCCCTCCC
TCCCTCTCTCGTTCCCTCCTCTCCCTCGCTCCTCAGGCCATGGACGTGGG
CTGCGGATCAGGCTATCTTACAGTGGCAATGGGCCGAATGGTGGAGCCGA
AGGGGCGCGTGGTGGGTATCGATATCGTCAAGCCCCTCGTTGCTCTCGCC
CGCAAGAACATTGCCAAGGCCGATGGGGACTTGCTGGAGAAAGGTGGGTG
TGTGGGTGGGTGGATGAAAAGTGGGTGGATGAAAGGCTGGTGGATGGATG
TTTATGAATGGTGGATACAATGGTAGGTGTGGGGGTGTGGGGGGGTGGAT
GTGTGGGTGGATGTATCGGTGTGGGGATATAAATATAAATATATATGGGT
GTGGGGATATAAATATAAATATATATGGATGTGGGGATATAAATATAAAT
ATCTATGTGTGTGGGTGGGTGGGTGTGGGTGGGTGGGTGTGGGTGTGGGT
GTGGGTGTGGGTGTGGGCATGTATCGGTGTGGGGATATAAATATAAATTT
ATATGTGTGTGGGTGGGTGTGGGGGTGTGGATGTGTGGGTGGATAGGTGG
GTGCATGGTCGGGTGTGGGTGTTGGCATGTATCGGTGTGGGGATGGATGG
GTAGGATGTGTGTTTTGGGTGGGGGGATAGTATGTCTTCGTGTGTGTGAG
ACATCCCTCCCCTCCTCTCTCCCTCCTTTATGAGCTGTGTGCGTCGGAAG
CATCCCGTTTCTTTCAACCCTCCTTCCCCTGACCCCTGTCCTGCCTTAAC
TCCTTCCCTTCTTCCTAACTCCTCTTGCACCTCCTCTCCCTTCAGGAGTG
GTCACCCTGGAATGCCAGACAGGCTGGGAGGGCGACAAAGACAAGGGGCC
TTACGACGCTATCCACGTGGGTGCGGCGGCTGCTTCCATCCCTCGCTCCC
TCGTTGAACAGCTCAAGGTAAGCAGCCCCATTCCCCCGCCTCTCATTCTC
GGCCCTTCCCTTGTTCCATCCCTCCACCTTGAGATATTTCTCCTCTCCTT
CCCTCCCCCAATCCCGTCTTTCCGCCCTTCCCACGCTTAGGTCGGCGGCA
TTATGATCCTCCCCGTGGGTCCTGAGGGCGGCAATCAAGCCCTTATCCGG
GTGGAGAAGGTGAGCCGACAGACGCGGAACGAAGAGAGCGCAGTTCTTAG
GGCTGTACTCATCCTTCCCTACCTGCCTGTTTCGCTTCCTTCCTCCATCC
CTTCCCTCCCCTCCCCCTTTCCTCCCCCTTCCTCTCTCCCTCTGACCCAT
TTTTCAGATCAAAGACCACGGTCCCATCGAGGAGACGTATGTGGCACAGG
TAAGAAAGCGAAAGGAGATACAAAGCTTCGCTATGGGTGGCCTTCCTCTC
CACCCTCCCTCCCTCCCTCCCTCCCGCCCTCCCTCTCCCGTTCCCTCTTT
CCAGACCCGATTTACTCATGCTCCCTTCCTCAGTATCATCCGGTCTTCTC
TCCCTCCACTCTCTCTACTAGGAGCTGCTGGGAGTGCGCTATGTCCCGCT
GGTCCGTCAGAGCCCTTACACCTAGAGGAGGGAGGGAGGGGGGGAGGGAG
CGAGTGTGTTGTAGACTGGTTGAGGGAGGAGAGAAGCATGGCATGGAGGG
GAGATAGAGGGGATGGGGCAAGGGACATTGCCCCACGTTACACGAGACGA
GTCACATGTGCATAGCCAGGTGTTCAAAAGATGACGGGAATTAAGCGGGG
GAGAAGTAGGCCGCAGTGGCAGGAAAGACAAGCGTAAGGGTATGTTGTAT
GCGTGTTTATGCATGTGCGTAAGCCCACGCATGTGTGAATGTGTCTGTAT
GTTTGTGTGCGTGACGATTTGTCGTATGTCTGCTTATCTGTCTACCTGTG
TCGCTATGTGTCGGTCTATGTCGGGGGGAGGCAGTGTATGGTTAGGGGAG
TTGAGAGTCTGATTCATCGAGGCTTCAGGGAATAGAAGAGGAAAAACGAG
CCTGGAGGAAGAGGGGGGCGAACGAGGGAGCAGAGAACGCATACAGACAC
GGGTTGTGACCGAACATATAGAAAAAGACGAGCAAGTCAGCTGGGGGAGA
CGTTTATGAAAAGAAAAAAAAGAAACCCTCAGTGAGTGGCAACCCTAC back to topCoding sequence (CDS) from alignment at chr8:1255318..1258765- >NO08G04300.2 ID=NO08G04300.2|Name=NO08G04300.2|organism=Nannochloropsis oceanica|type=CDS|length=1434bp|location=Sequence derived from alignment at chr8:1255318..1258765- (Nannochloropsis oceanica) ATGACTGGTCGTCAGGAGCGTGTGTGTGGTGCTGTAAAGAAAATTGCTTG CCAAGGAAGACACTTCACGAATTGCAGGCATGTCACACAAGCCCCACTTC TCAACACATGTGTTCTGTTCTGCCAAGAAAGGCCACAACTATGCGCGCGC CAGCTGCAGGCACAACATGCGAGGCAAGGCATCTTTACCACCAGACTTTC AGCACTCTCATTCTGTATTTTGTTGAGGCGTGGAGCCTGGACTTTTCAAC CACTTTCTTCCCTTTACCCCCCAATCCCGCCCCACCCATCCAGCATCCAG ACTATCTTATTCGTAGGGATTTCAACACCGTGGATGGTCCTTGGCTGGTC GTTGTCCGTTCTTGCCACTATCGCAGACGGGTTCCACTCCCCTCGCCGCA AAATCAACAGTTGTTCTTCCGCCTTTATTGTTCTTCTCCTTCTTCGAGCC TCGATAGTGATGGCTTGGTTCTGTTCCGGCCGCAGCAACACGGAGCTTGT CCAGCGCCTGCGTTCTGCCAATGTCATAACTAGTGAGCGGGTGAAGGAGG TCATGCTCCGCGTGGACAGGGCGAACTACGCCCCGAATTCAGCCTACGAG GACTCCCCGCAGTACCTTGGCTACGAGCAGACCATTTCCGCGCCGCACAT GCACGCGCACGCCTTGGAGCTGCTGAAGGATAAGCTGGTTCCAGGGGCGA CTGCCATGGACGTGGGCTGCGGATCAGGCTATCTTACAGTGGCAATGGGC CGAATGGTGGAGCCGAAGGGGCGCGTGGTGGGTATCGATATCGTCAAGCC CCTCGTTGCTCTCGCCCGCAAGAACATTGCCAAGGCCGATGGGGACTTGC TGGAGAAAGGAGTGGTCACCCTGGAATGCCAGACAGGCTGGGAGGGCGAC AAAGACAAGGGGCCTTACGACGCTATCCACGTGGGTGCGGCGGCTGCTTC CATCCCTCGCTCCCTCGTTGAACAGCTCAAGGTCGGCGGCATTATGATCC TCCCCGTGGGTCCTGAGGGCGGCAATCAAGCCCTTATCCGGGTGGAGAAG GTGAGCCGACAGACGCGGAACGAAGAGAGCGCAGTTCTTAGGGCTGTACT CATCCTTCCCTACCTGCCTGTTTCGCTTCCTTCCTCCATCCCTTCCCTCC CCTCCCCCTTTCCTCCCCCTTCCTCTCTCCCTCTGACCCATTTTTCAGAT CAAAGACCACGGTCCCATCGAGGAGACGTATGTGGCACAGGAGCTGCTGG GAGTGCGCTATGTCCCGCTGGTCCGTCAGAGCCCTTACACCTAGAGGAGG GAGGGAGGGGGGGAGGGAGCGAGTGTGTTGTAGACTGGTTGAGGGAGGAG AGAAGCATGGCATGGAGGGGAGATAGAGGGGATGGGGCAAGGGACATTGC CCCACGTTACACGAGACGAGTCACATGTGCATAG back to top
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