NO08G04240.1, NO08G04240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G04240.1
Unique NameNO08G04240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2474
Alignment locationchr8:1227454..1231266 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1227454..1231266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G04240.1 vs.
Match: CBJ30133.1 (transmembrane protein TPARL, putative [Ectocarpus siliculosus])

HSP 1 Score: 244.2 bits (622), Expect = 6.800e-61
Identity = 151/284 (53.17%), Postives = 183/284 (64.44%), Query Frame = 0 
Query:  111 ASDVDESGMPILGFWPAFFNSLSMILVTELGDKTFFIAAVLAMRYDRLLIFGGAIGALILMTILSAAIGNVLPNVLPRKYTHYASAFLFLYFGIKLLMEAQGMEG-SGPSDELQEVEEELLHKKEDVCHSPHSTEMTHLENGSSSNNSSNNSGSCSEGGREGGREGGREERSGSPLGGGHGRQGSYHPQDSRGKGGGGTKVFTQALTLTFLAEWGDRSQIATIALAAAKDPFGVTAGGILGHSLCTGLAVVGGRMLAARISEKTVASTGGALFLVFCLHSLLVG 394
            A    E   P +GFW AF NS++MI+ TE+GDKTFFIAA++AM + RL +FGGA+GAL +MT+LSAA+G  LP +LPR YTHYASA LFLYFG ++L E  GME   GPS+EL EVEEEL  K+E                       S  +    EGG   G  GG         GG   R+G+               V T + ++TFLAEWGDRSQIATIALA  KDPFGVTAGG++GHSLCTG+AV+GG++LAARISEKTV   GGALFLVF LH+L+ G
Sbjct:   35 AVSAGEGEPPQVGFWTAFANSVAMIIATEIGDKTFFIAAIMAMSHPRLAVFGGAVGALAVMTVLSAALGYALPAILPRTYTHYASALLFLYFGFRMLKE--GMESHGGPSEELTEVEEELAKKRE------------------GEAKKSGPAAFDMEGGGAIGGAGG---------GGVRSRRGA---------------VMTMSFSMTFLAEWGDRSQIATIALATNKDPFGVTAGGVIGHSLCTGMAVIGGKLLAARISEKTVHLVGGALFLVFGLHALVFG 274
The following BLAST results are available for this feature:
BLAST of NO08G04240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ30133.16.800e-6153.17transmembrane protein TPARL, putative [Ectocarpus ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G04240NO08G04240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G04240.1NO08G04240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G04240.1.cds1NO08G04240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04240.1.cds2NO08G04240.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04240.1.cds3NO08G04240.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04240.1.cds4NO08G04240.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04240.1.cds5NO08G04240.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04240.1.cds6NO08G04240.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04240.1.cds7NO08G04240.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04240.1.cds8NO08G04240.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04240.1.cds9NO08G04240.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G04240.1 ID=NO08G04240.1|Name=NO08G04240.1|organism=Nannochloropsis oceanica|type=mRNA|length=2474bp
ACCACAGACTCAAGACGACAAGGCGTGGCACTGCTGCTACGCTGGCTGCG
AGCTTTTCTTCACCTCCGGCTTGGAGTGTGCGCGCCCTCTCGTCTTGTCA
CGTTCTCTGTTGACGAAGGAAGACCACCATCATCATCAGAAGGAGTCTCG
CCAAGTCAAGGCCTTAATACTCCTCTCAACGACCAGAAACAACCAGCAGT
GGTACTGAGATAACAATGCCAAGAAGAAGAGTCACCCACAGCACCTCATC
TCTTGCCCCTCCTCCCCTCTCCCGCTCCACGTCCTCCTCTTCGTGGTTGT
CGTCCTCCTCCACCTTCTCTTCTAAGCCCAGGCGCTCCCTCTGCATGGGC
AGCCTCCTCGTGCTTGCCGTCCTTCTCATTGGCGTGATCACTCTAATCAG
CGCAGAGAATGTGCTCCCCGACAGCGGGAGCGGGGATGGCAGCGTCGTTT
TCTTTCGGGCAGACAACTTCGGGGATGACGCTTATCCAGCCCTGGGGGAG
GAGGGAGGGAAGGGAAAAAGGATCGAGGGGGCGGCAGAGGTTATGGCCTC
CGATGTAGACGAGTCGGGTATGCCCATCCTGGGCTTCTGGCCCGCATTTT
TTAACTCCCTGTCCATGATCCTCGTTACAGAGCTGGGGGACAAGACATTT
TTCATCGCTGCCGTGCTGGCCATGCGCTACGACCGACTCCTCATCTTCGG
CGGGGCCATTGGGGCCCTAATCCTGATGACCATCCTCTCGGCCGCCATCG
GCAACGTCCTCCCTAATGTACTCCCCCGGAAATACACACATTACGCCTCA
GCGTTCCTCTTCCTCTACTTCGGCATCAAGCTCCTCATGGAAGCTCAGGG
CATGGAGGGTTCTGGCCCCAGCGACGAGCTCCAGGAGGTGGAGGAGGAAC
TACTTCACAAGAAAGAAGACGTATGCCATTCCCCCCACTCGACTGAGATG
ACGCACCTCGAGAATGGCAGCAGCAGCAACAACAGCAGCAACAACAGCGG
CAGTTGCAGCGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
AGAGGAGCGGGTCGCCGTTGGGAGGGGGCCATGGGCGGCAGGGATCATAC
CACCCGCAGGACAGTAGAGGGAAGGGGGGGGGAGGGACGAAGGTGTTCAC
GCAGGCCCTCACCCTCACCTTTCTGGCCGAATGGGGAGACCGCTCTCAAA
TCGCGACGATCGCCCTCGCTGCTGCCAAGGATCCCTTTGGTGTGACGGCC
GGGGGCATCTTAGGCCACTCGCTGTGCACGGGGCTGGCGGTAGTAGGTGG
CCGCATGCTGGCTGCCAGGATCAGCGAGAAGACCGTCGCCTCCACGGGCG
GCGCACTCTTCCTGGTTTTCTGCCTCCACTCCCTGCTCGTGGGACCGTGA
CGAAAAGGAGGGAGGGAGGGAGGGAGGGAGGGGTAGATAACTGCGTACTC
TTCTTCTTATTTTTAAATCGTAGTGGCAAGTCGAATTGTGTTGTGAAAGA
AAAAGGAAGGGAGGGAGGGAGGAAGGGAAAGAGGAAGGGAAGAAAAGAAA
CGTTGAGTGATGCAGCTAGAGCCACTACCACTGTACCAGCAGCAGCAGCA
GCAGCAGCAGTAGCACGACAAACACCACCAGCACAAAATGAGAGAAAGAG
CAGCGACCGAAGTAGCAGTAGTAGGGGTAGGAATGGTGAAGGGCACTTGA
GCTTGTGACGATAAGAAAGTAGAACAGCAGCAGGAGCAGCAGGAGCAGCG
GCAACAAAGAAGATGAAATGTAGTAGAGCCATTTAGTCAAATATATGGGT
TCGGTTCTTTGTTTCGTTTCCCTCTCTCCTTCCCTCCCTCCCTTCCTCCC
TTTCGCCTGCCTCTTTGCCTAATGTCTTGCTTCCCCCCTCTTTCCCCCCA
CCCCCCTCCACCGATACAAAGTCGTTCTCCTCGTCGTCCTCCTCCTCCTC
CTCCTACTCCTCCACTCCACCTTTTCCCCTCTCTCTTCTTTTCCTCTCTC
TTTTTTCTTCAACCCATCACACAAGTACACACTACACACCCCACCCGGAC
CCCTCCCGTCCTCCCTCTCTCAAGTCCTCCCTCACTCCCTCCCTCCCTAC
TCATCTGAGCCATAGTCGTACTTAATCGAGTGACTCGCTAGGGAGATGGC
ACCCCCTCTGTAGTTACCTCTCTTTTTCTTCGTCTTCTCGTGCCGGAAAT
CTTTCCCCCGTACCGTCATTAACTTTTCGCTGGCTTTCGCGCCATATCCA
CCGCTGCCGAACGTGCCAGCGTCTGAAGGAGGAAGGGGGGGAAGGAGGGA
GGGAAGGTGAGTGCCATCATTTCCTAGTGTCACGAGCTTCGAACGAAAGC
CACTTAAAACCCACAGTCCTTCCTTCCTCCCTCCCTACTCACAAGAGTTA
TCCTTCAACCGCTCGTCCTTGATCTGCCCACCCCAATACACGTCATCCAC
CCGCCTGAACGCCTCCCCCGGCGC
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protein sequence of NO08G04240.1

>NO08G04240.1-protein ID=NO08G04240.1-protein|Name=NO08G04240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MPRRRVTHSTSSLAPPPLSRSTSSSSWLSSSSTFSSKPRRSLCMGSLLVL
AVLLIGVITLISAENVLPDSGSGDGSVVFFRADNFGDDAYPALGEEGGKG
KRIEGAAEVMASDVDESGMPILGFWPAFFNSLSMILVTELGDKTFFIAAV
LAMRYDRLLIFGGAIGALILMTILSAAIGNVLPNVLPRKYTHYASAFLFL
YFGIKLLMEAQGMEGSGPSDELQEVEEELLHKKEDVCHSPHSTEMTHLEN
GSSSNNSSNNSGSCSEGGREGGREGGREERSGSPLGGGHGRQGSYHPQDS
RGKGGGGTKVFTQALTLTFLAEWGDRSQIATIALAAAKDPFGVTAGGILG
HSLCTGLAVVGGRMLAARISEKTVASTGGALFLVFCLHSLLVGP*
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mRNA from alignment at chr8:1227454..1231266+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G04240.1 ID=NO08G04240.1|Name=NO08G04240.1|organism=Nannochloropsis oceanica|type=mRNA|length=3813bp|location=Sequence derived from alignment at chr8:1227454..1231266+ (Nannochloropsis oceanica)
ACCACAGACTCAAGACGACAAGGCGTGGCACTGCTGCTACGCTGGCTGCG
AGCTTTTCTTCACCTCCGGCTTGGAGTGTGCGCGCCCTCTCGTCTTGTCA
CGTTCTCTGTTGACGAAGGAAGACCACCATCATCATCAGAAGGAGTCTCG
CCAAGTCAAGGCCTTAATACTCCTCTCAACGACCAGAAACAACCAGCAGT
GGTACTGAGATAACAATGCCAAGAAGAAGAGTCACCCACAGCACCTCATC
TCTTGCCCCTCCTCCCCTCTCCCGCTCCACGTCCTCCTCTTCGTGGTTGT
CGTCCTCCTCCACCTTCTCTTCTAAGCCCAGGCGCTCCCTCTGCATGGGC
AGCCTCCTCGTGCTTGCCGTCCTTCTCATTGGCGTGATCACTCTAATCAG
CGCAGAGGTACGTGCAATATGAAGCCCCCCTTTTACCTCCCTTCTTCCCT
CCGTTTTCCCCTCCTCTCCCTCTTCCTCTACTCCCTGTCGACTCCTCAGC
TCATCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCCTCCCTCTCCCTC
ACAGAATGTGCTCCCCGACAGCGGGAGCGGGGATGGCAGCGTCGTTTTCT
TTCGGGCAGACAACTTCGGGGATGACGCTTATCCAGCCCTGGGGGAGGAG
GGAGGGAAGGGAAAAAGGATCGAGGGGGCGGCAGAGGTTATGGCCTCCGA
TGTAGACGAGGTGAGGAGGAGGGAAGGAGGGAGAGAGAAAATTGTCCCGT
CAAACAGGGATGCCGCATACTATAAGTCATCTCACACCTCATTCCATCTT
CTCCCACCCTCCCTCCCTCCCTCCCATCCTCCCTCCCTCCCTCCTTCCCT
CCCTCCCTCCCTCCCTCCTCTGCAGTCGGGTATGCCCATCCTGGGCTTCT
GGCCCGCATTTTTTAACTCCCTGTCCATGATCCTCGTTACAGAGCTGGGG
GACAAGACATTTTTCATCGCTGCCGTGCTGGCCATGCGCTACGACCGACT
CCTCATCTTCGGCGGGGCCATTGGTAAGTGGGAGGGGGAGAGAGAGGGAG
GGAGGGAGGGAGGGAGGAAGGAATGCATTAAAGAACTTGACCTTGATATC
TCTTATTGGTGCTCACAGCTCCTTGTTCCTCCGTGCCTCCCTCCCTCCCC
TGCCTCCCTCCCTCCGTGCCTCCCTTCCTCCCTCCCTCCCCCCCTCTCTC
CGACGCTGCCTGTCTTTCTGTTCAGGGGCCCTAATCCTGATGACCATCCT
CTCGGCCGCCATCGGCAACGTCCTCCCTAATGTACTCCCCCGGAAATACA
CACATTACGCCTCAGCGGTACGTCCATCCCTCCCTCGCTCCCTCCCTCGC
TCCCTCCCTCGCTCCCTCCCTCTTCCTCGACTCCCCATCGTTCTCCCTCG
GCCCATCCCTCCTCCCTTTTTCCCTTCCTCCCTCCCTCCCTCAGTTCCTC
TTCCTCTACTTCGGCATCAAGCTCCTCATGGAAGCTCAGGGCATGGAGGG
TTCTGGCCCCAGCGACGAGCTCCAGGAGGTGGAGGAGGAACTACTTCACA
AGAAAGAAGGTACTTTCCCCTTCCCTCCCTCCCTTCCTCCCTCCCTTCCT
CCGTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCCTCCCGCTGTTTTCCT
TTCTTTTCGTTCTCGCTTTTGCTCACCTGATGCAACGGTCGTGCCGTTTC
GACCATATTTCATCCTCCCTCCCTCCCTCCCTCCCTTCCCCCAGACGTAT
GCCATTCCCCCCACTCGACTGAGATGACGCACCTCGAGAATGGCAGCAGC
AGCAACAACAGCAGCAACAACAGCGGCAGTTGCAGCGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGAGAGGAGCGGGTCGCCGTTGGGAG
GGGGCCATGGGCGGCAGGGATCATACCACCCGCAGGACAGTAGAGGGAAG
GGGGGGGGAGGGACGAAGGTGTTCACGCAGGTACGGGAGGGAGGGAGGGA
GGGGAGGAGAGGAGAGGAAAGGAGAGGAGCGAGAGGGACGAGGATGGTTT
CTGTTGGGAAGGAAGGGAGGGACGGAGGGAGGGAAAAGAAGAAACAGGAG
GACAGACGATTGATCTTTCCCCTCCCTCCCTCCCTCCCTCCCTTCCGTCC
TCCCTCCCGTCCTCTCTCTCCCAGGCCCTCACCCTCACCTTTCTGGCCGA
ATGGGGAGACCGCTCTCAAATCGCGACGATCGCCCTCGCTGCTGCCAAGG
ATCCCTTTGGTGGTACGTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTTTCTCCCCCCAAAGTAATGGCTGCTGGCCTTCTCTGCCCAGGCCC
ACCCTCCCTTACCCCCTCTCCCTCCCTCCACCCCTCCCTCCCTCCCTCCA
GTGACGGCCGGGGGCATCTTAGGCCACTCGCTGTGCACGGGGCTGGCGGT
AGTAGGTGGCCGCATGCTGGCTGCCAGGATCAGCGAGAAGACCGTCGCCT
CCACGGTACGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCC
TTCTCCCTTCCTCCCTCCCTCCCCTCTCCCTCCCTCTTTTCCTGCCCCCC
TCTCTGTGTGACACGACGCCCACCAACCCTCCTTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCCCCCTCCCTCGTACAGGGCGGCGCACTCTTC
CTGGTTTTCTGCCTCCACTCCCTGCTCGTGGGACCGTGACGAAAAGGAGG
GAGGGAGGGAGGGAGGGAGGGGTAGATAACTGCGTACTCTTCTTCTTATT
TTTAAATCGTAGTGGCAAGTCGAATTGTGTTGTGAAAGAAAAAGGAAGGG
AGGGAGGGAGGAAGGGAAAGAGGAAGGGAAGAAAAGAAACGTTGAGTGAT
GCAGCTAGAGCCACTACCACTGTACCAGCAGCAGCAGCAGCAGCAGCAGT
AGCACGACAAACACCACCAGCACAAAATGAGAGAAAGAGCAGCGACCGAA
GTAGCAGTAGTAGGGGTAGGAATGGTGAAGGGCACTTGAGCTTGTGACGA
TAAGAAAGTAGAACAGCAGCAGGAGCAGCAGGAGCAGCGGCAACAAAGAA
GATGAAATGTAGTAGAGCCATTTAGTCAAATATATGGGTTCGGTTCTTTG
TTTCGTTTCCCTCTCTCCTTCCCTCCCTCCCTTCCTCCCTTTCGCCTGCC
TCTTTGCCTAATGTCTTGCTTCCCCCCTCTTTCCCCCCACCCCCCTCCAC
CGATACAAAGTCGTTCTCCTCGTCGTCCTCCTCCTCCTCCTCCTACTCCT
CCACTCCACCTTTTCCCCTCTCTCTTCTTTTCCTCTCTCTTTTTTCTTCA
ACCCATCACACAAGTACACACTACACACCCCACCCGGACCCCTCCCGTCC
TCCCTCTCTCAAGTCCTCCCTCACTCCCTCCCTCCCTACTCATCTGAGCC
ATAGTCGTACTTAATCGAGTGACTCGCTAGGGAGATGGCACCCCCTCTGT
AGTTACCTCTCTTTTTCTTCGTCTTCTCGTGCCGGAAATCTTTCCCCCGT
ACCGTCATTAACTTTTCGCTGGCTTTCGCGCCATATCCACCGCTGCCGAA
CGTGCCAGCGTCTGAAGGAGGAAGGGGGGGAAGGAGGGAGGGAAGGTGAG
TGCCATCATTTCCTAGTGTCACGAGCTTCGAACGAAAGCCACTTAAAACC
CACAGTCCTTCCTTCCTCCCTCCCTACTCACAAGAGTTATCCTTCAACCG
CTCGTCCTTGATCTGCCCACCCCAATACACGTCATCCACCCGCCTGAACG
CCTCCCCCGGCGC
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Coding sequence (CDS) from alignment at chr8:1227454..1231266+

>NO08G04240.1 ID=NO08G04240.1|Name=NO08G04240.1|organism=Nannochloropsis oceanica|type=CDS|length=1185bp|location=Sequence derived from alignment at chr8:1227454..1231266+ (Nannochloropsis oceanica)
ATGCCAAGAAGAAGAGTCACCCACAGCACCTCATCTCTTGCCCCTCCTCC
CCTCTCCCGCTCCACGTCCTCCTCTTCGTGGTTGTCGTCCTCCTCCACCT
TCTCTTCTAAGCCCAGGCGCTCCCTCTGCATGGGCAGCCTCCTCGTGCTT
GCCGTCCTTCTCATTGGCGTGATCACTCTAATCAGCGCAGAGAATGTGCT
CCCCGACAGCGGGAGCGGGGATGGCAGCGTCGTTTTCTTTCGGGCAGACA
ACTTCGGGGATGACGCTTATCCAGCCCTGGGGGAGGAGGGAGGGAAGGGA
AAAAGGATCGAGGGGGCGGCAGAGGTTATGGCCTCCGATGTAGACGAGTC
GGGTATGCCCATCCTGGGCTTCTGGCCCGCATTTTTTAACTCCCTGTCCA
TGATCCTCGTTACAGAGCTGGGGGACAAGACATTTTTCATCGCTGCCGTG
CTGGCCATGCGCTACGACCGACTCCTCATCTTCGGCGGGGCCATTGGGGC
CCTAATCCTGATGACCATCCTCTCGGCCGCCATCGGCAACGTCCTCCCTA
ATGTACTCCCCCGGAAATACACACATTACGCCTCAGCGTTCCTCTTCCTC
TACTTCGGCATCAAGCTCCTCATGGAAGCTCAGGGCATGGAGGGTTCTGG
CCCCAGCGACGAGCTCCAGGAGGTGGAGGAGGAACTACTTCACAAGAAAG
AAGACGTATGCCATTCCCCCCACTCGACTGAGATGACGCACCTCGAGAAT
GGCAGCAGCAGCAACAACAGCAGCAACAACAGCGGCAGTTGCAGCGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGAGGAGCGGGTCGC
CGTTGGGAGGGGGCCATGGGCGGCAGGGATCATACCACCCGCAGGACAGT
AGAGGGAAGGGGGGGGGAGGGACGAAGGTGTTCACGCAGGCCCTCACCCT
CACCTTTCTGGCCGAATGGGGAGACCGCTCTCAAATCGCGACGATCGCCC
TCGCTGCTGCCAAGGATCCCTTTGGTGTGACGGCCGGGGGCATCTTAGGC
CACTCGCTGTGCACGGGGCTGGCGGTAGTAGGTGGCCGCATGCTGGCTGC
CAGGATCAGCGAGAAGACCGTCGCCTCCACGGGCGGCGCACTCTTCCTGG
TTTTCTGCCTCCACTCCCTGCTCGTGGGACCGTGA
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Synonyms
Publications