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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:1195289..1197228 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G04150.3 vs.
Match: XP_005853913.1 (hypothetical protein NGA_0460801 [Nannochloropsis gaditana CCMP526]; EKU22448.1 hypothetical protein NGA_0460801 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 287.7 bits (735), Expect = 3.700e-74 Identity = 131/213 (61.50%), Postives = 174/213 (81.69%), Query Frame = 0
Query: 53 SSSDSIPKLKEEIKALQQKFDVLQRRFWLEPLEPIWQYRGKFYLGKTKDVEDKDQVTPFLLANFVDASNKTLYRRRIYIDLGIKDFNSSLCWMMQNYPIKFDAMYGFECERDMTNVATLRDPINRCISETAAE-KMGYTTEGTMDTLKVYHNFIGLDEDLETSPQTRGLSQFLKDIDIQEDDFVVLKMDVEGIEFSLLERMMANGTYKLIDEV 265
SS S L E ++A+++ VLQ+RFW EPLEPIWQYRGK+YLGKT D+EDKDQVTPF LANFV+AS+ +Y+R+IYIDLGIKDF SSLCW+MQNYP+KFDA++GFEC D++NVA L I+ C+ TAA+ K GYT EG + L +Y+N+IG DE+ T P TRGLSQ +KD++I++DD+VV+KMDVE +E++LL++++A+GTYKLIDE+
Sbjct: 51 SSVKSSQSLYERMQAVEENMKVLQKRFWQEPLEPIWQYRGKYYLGKTNDIEDKDQVTPFFLANFVNASDPAVYKRKIYIDLGIKDFYSSLCWIMQNYPVKFDAIHGFECASDLSNVAALSSQIDACVRGTAADLKQGYTPEGVKEILHIYYNYIGTDENPATQPPTRGLSQVMKDLNIEKDDYVVVKMDVEEMEYALLDKIIADGTYKLIDEM 263
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G04150.3 ID=NO08G04150.3|Name=NO08G04150.3|organism=Nannochloropsis oceanica|type=mRNA|length=1444bp AGAAAATCGTATCAGACAGGCTACAACGGATATTACTTGATACATGAAAT TTTATAGAGCTTTGAAACATAGCAAGCCCAAACTTTGGTGGCTGTCGAAC ATGCTGTTTGGCGGTATACTTCTGGGATATGTTCTATACATGAAATGTGG CTACATATTCCAGAGCAACAGCAGCCTTGGTGATCCAGTTCTCGCCATTT CGTCAAGCGACTCAATACCAAAGCTTAAAGAAGAAATTAAGGCACTTCAA CAGAAGTTTGATGTTCTCCAAAGAAGGTTTTGGCTGGAACCCCTCGAGCC TATTTGGCAGTACCGCGGGAAGTTTTACCTGGGAAAGACAAAAGATGTCG AAGACAAGGACCAGGTGACACCGTTTCTGCTGGCCAATTTCGTCGACGCT TCGAACAAGACATTATACAGGCGTAGAATCTACATCGACTTGGGTATTAA GGATTTTAATTCGAGCCTGTGCTGGATGATGCAAAATTACCCGATTAAGT TCGATGCTATGTATGGGTTTGAATGTGAGAGAGACATGACCAACGTGGCC ACCTTACGGGACCCTATAAATCGGTGCATCAGTGAAACTGCGGCAGAAAA GATGGGCTACACCACAGAAGGAACGATGGATACTCTCAAAGTGTACCACA ATTTCATCGGCCTGGATGAGGACTTGGAGACATCACCGCAAACGCGTGGC CTCAGCCAGTTTCTCAAAGATATTGACATACAAGAAGACGACTTTGTGGT GCTCAAGATGGACGTTGAAGGAATCGAGTTCAGTCTTTTGGAGCGTATGA TGGCTAATGGCACGTACAAGCTCATCGATGAGGTACGCACGTTTGCAAGA TAGAAGAGATATCTTGATGCGCATGCTTACAAATGAAAAAATTGAGATCA TATATTAGTGTGTAAGGGAAACAGATGAGTACGCGACTCTAGAGCCAATT GACGATGTTCACACTCTTTCATCAACATCATCGTACTCATATTCACAGAT ATTCGTTGAGATCCATTACCGACATCCGGACATGCAACCATTCGGGTGGG ACATTTTTGAACACTCTCTCAGTGATGCGCAAGCTTTATTCACCAAGGCA CGGGACATGGGAATTTACATCCACCCATGGCCATAAGTCTGTTTCTACAA TGTCTGTTTCTACAATAGATCTTGCGTCAGGGAAAAAAGTTTCCAATTAA ATGCAGCAAGTTTCTAGGAAAAATAATCATATTATAGGTACATTTAGGAC GTCCACTGCACACGTGTACCCGGGGATGGGACCCTTTCAGAATCGCGAAT ATGACGGACGTAGTTCAAAGAAATGTATTCAGACAACTCCAGCTGTAAGA CGACACACCAAAGCAAACTCAAATCAAGCCTAGCAAAAGGCCAAGCACTT CTCGCTTAAACAACTACGCGTAGCACATAATTTTGCAAACGGAC back to topprotein sequence of NO08G04150.3 >NO08G04150.3-protein ID=NO08G04150.3-protein|Name=NO08G04150.3|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp MKFYRALKHSKPKLWWLSNMLFGGILLGYVLYMKCGYIFQSNSSLGDPVL AISSSDSIPKLKEEIKALQQKFDVLQRRFWLEPLEPIWQYRGKFYLGKTK DVEDKDQVTPFLLANFVDASNKTLYRRRIYIDLGIKDFNSSLCWMMQNYP IKFDAMYGFECERDMTNVATLRDPINRCISETAAEKMGYTTEGTMDTLKV YHNFIGLDEDLETSPQTRGLSQFLKDIDIQEDDFVVLKMDVEGIEFSLLE RMMANGTYKLIDEVRTFAR* back to topmRNA from alignment at chr8:1195289..1197228+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G04150.3 ID=NO08G04150.3|Name=NO08G04150.3|organism=Nannochloropsis oceanica|type=mRNA|length=1940bp|location=Sequence derived from alignment at chr8:1195289..1197228+ (Nannochloropsis oceanica) AGAAAATCGTATCAGACAGGCTACAACGGATATTACTTGATACATGAAAT
TTTATAGAGCTTTGAAACATAGCAAGCCCAAACTTTGGTGGCTGTCGAAC
ATGCTGTTTGGCGGTATACTTCTGGGATATGTTCTATACATGAAATGTGG
CTACATATTCCAGAGCAACAGCAGCCTTGGTGATCCAGTTCTCGCCATTT
CGTCAAGCGACTCAATACCAAAGCTTAAAGAAGAAATTAAGGCACTTCAA
CAGAAGTTTGATGTTCTCCAAAGAAGGTATGTGCACACCGCGTTAGAATA
CATTTCTATTTTGCCAGGAGCTGCTCTACGTGCGAAGAACGTAGTTGGCT
TCACCTGCATCATCGATCCGCATCTAGGTTTTGGCTGGAACCCCTCGAGC
CTATTTGGCAGTACCGCGGGAAGTTTTACCTGGGAAAGACAAAAGATGTC
GAAGACAAGGACCAGGTGAGCAGATATCCGCTCACTTACAAACCTTTCCA
ACAGGAAAAACTTCCGGTTACCAAGGCCATGAGTCCTCCCCGCTATAAAT
TCTTTCCAAGCCTTCCATCACTCGATAAGCCTCTCCACTATGTCCCGTTC
GTACGACGAACTCTCTGAGAATATCTTGACCTCTACATGTTATCATGGTA
GTATACGGGACACATTTTCCCCTAATCCCTAAACCTCTTCTTCCGACCAT
CAATATTTGTGCTTCCCACTTTAGGTGACACCGTTTCTGCTGGCCAATTT
CGTCGACGCTTCGAACAAGACATTATACAGGCGTAGAATCTACATCGACT
TGGGTATTAAGGATTTTAATTCGAGCCTGTGCTGGATGATGCAAAATTAC
CCGATTAAGTTCGATGCTATGTATGGGTTTGAATGTGAGAGAGACATGAC
CAACGTGGCCACCTTACGGGACCCTATAAATCGGTGCATCAGTGAAACTG
CGGCAGAAAAGATGGGCTACACCACAGAAGGAACGATGGATACTCTCAAA
GTGTACCACAATTTCATCGGCCTGGATGAGGACTTGGAGACATCACCGCA
AACGCGTGGCCTCAGCCAGTTTCTCAAAGATATTGACATACAAGAAGACG
ACTTTGTGGTGCTCAAGATGGACGTTGAAGGAATCGAGTTCAGTCTTTTG
GAGCGTATGATGGCTAATGGCACGTACAAGCTCATCGATGAGGTACGCAC
GTTTGCAAGATAGAAGAGATATCTTGATGCGCATGCTTACAAATGAAAAA
ATTGAGATCATATATTAGTGTGTAAGGGAAACAGATGAGTACGCGACTCT
AGAGCCAATTGACGATGTTCACACTCTTTCATCAACATCATCGTACTCAT
ATTCACAGATATTCGTTGAGATCCATTACCGACATCCGGACATGCAACCA
TTCGGGTGGGACATTTTTGAACACTCTCTCAGTGATGCGCAAGCTTTATT
CACCAAGGCACGGGACATGGGAATTTACATCCACCCATGGCCATAAGTCT
GTTTCTACAATGTCTGTTTCTACAATAGATCTTGCGTCAGGGAAAAAAGT
TTCCAATTAAATGCAGCAAGTTTCTAGGAAAAATAATGTAAGTTTTGAAG
GATGGTAGTTGCACTCAGAACTGTGCCGGAGTGACAATTTTGTTTTGTCG
TGAGTTCACGTCTCGCTCTCTGTTAGGGTTATATTACTCCGCAATTTTCT
CATTTTCATTTCACATTCACCAGCATATTATAGGTACATTTAGGACGTCC
ACTGCACACGTGTACCCGGGGATGGGACCCTTTCAGAATCGCGAATATGA
CGGACGTAGTTCAAAGAAATGTATTCAGACAACTCCAGCTGTAAGACGAC
ACACCAAAGCAAACTCAAATCAAGCCTAGCAAAAGGCCAAGCACTTCTCG
CTTAAACAACTACGCGTAGCACATAATTTTGCAAACGGAC back to topCoding sequence (CDS) from alignment at chr8:1195289..1197228+ >NO08G04150.3 ID=NO08G04150.3|Name=NO08G04150.3|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at chr8:1195289..1197228+ (Nannochloropsis oceanica) ATGAAATTTTATAGAGCTTTGAAACATAGCAAGCCCAAACTTTGGTGGCT GTCGAACATGCTGTTTGGCGGTATACTTCTGGGATATGTTCTATACATGA AATGTGGCTACATATTCCAGAGCAACAGCAGCCTTGGTGATCCAGTTCTC GCCATTTCGTCAAGCGACTCAATACCAAAGCTTAAAGAAGAAATTAAGGC ACTTCAACAGAAGTTTGATGTTCTCCAAAGAAGGTTTTGGCTGGAACCCC TCGAGCCTATTTGGCAGTACCGCGGGAAGTTTTACCTGGGAAAGACAAAA GATGTCGAAGACAAGGACCAGGTGACACCGTTTCTGCTGGCCAATTTCGT CGACGCTTCGAACAAGACATTATACAGGCGTAGAATCTACATCGACTTGG GTATTAAGGATTTTAATTCGAGCCTGTGCTGGATGATGCAAAATTACCCG ATTAAGTTCGATGCTATGTATGGGTTTGAATGTGAGAGAGACATGACCAA CGTGGCCACCTTACGGGACCCTATAAATCGGTGCATCAGTGAAACTGCGG CAGAAAAGATGGGCTACACCACAGAAGGAACGATGGATACTCTCAAAGTG TACCACAATTTCATCGGCCTGGATGAGGACTTGGAGACATCACCGCAAAC GCGTGGCCTCAGCCAGTTTCTCAAAGATATTGACATACAAGAAGACGACT TTGTGGTGCTCAAGATGGACGTTGAAGGAATCGAGTTCAGTCTTTTGGAG CGTATGATGGCTAATGGCACGTACAAGCTCATCGATGAGGTACGCACGTT TGCAAGATAG back to top
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