NO08G04140.4, NO08G04140.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G04140.4
Unique NameNO08G04140.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1817
Alignment locationchr8:1192190..1194178 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1192190..1194178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G04140.4 vs.
Match: WP_088890484.1 (family 2 glycosyl transferase [Leptolyngbya ohadii])

HSP 1 Score: 204.5 bits (519), Expect = 4.800e-49
Identity = 93/182 (51.10%), Postives = 127/182 (69.78%), Query Frame = 0 
Query:  129 VNELFTWFTDRQKGPGAHKWSTYLDAYHRHFNRFRTQAKITMVEVGVQSGGSIEMWRSYFGADKLNYIGIDINPECKQFEKDGVRIVIGNQGDPAFWEQFKKEIPDELDIFVDDGGHTMNQQIVTFDKMFWGVRDGGIYLCEDLHTSYWQEYEGGYLNNNSMIEKSKTLIDTINAWHSKEAG 311
            +N+L  +F    K    HKW+ Y + Y RHF+RFR    + ++E+GV  GGS++MWR+YFG      IG+DI+P CK+ E++G+ I+IG+Q D  F    + ++P  +DI +DDGGHTM QQI+TF+++F  V++ G+YLCEDLHTSYWQEY GGY N NS IE SK  ID INAWHS + G
Sbjct:    1 MNDLQLYFESNDKRL-IHKWTHYFEIYDRHFSRFRN-TDVCILEIGVYHGGSLQMWRNYFGP-YAKIIGVDIDPRCKELEEEGIEIIIGDQEDREFLASLRSKLPP-VDILIDDGGHTMRQQIITFEELFPLVKEDGVYLCEDLHTSYWQEYGGGYRNPNSFIEYSKAFIDQINAWHSCDPG 178
The following BLAST results are available for this feature:
BLAST of NO08G04140.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_088890484.14.800e-4951.10family 2 glycosyl transferase [Leptolyngbya ohadii... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G04140NO08G04140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G04140.4NO08G04140.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G04140.4.cds1NO08G04140.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04140.4.cds2NO08G04140.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04140.4.cds3NO08G04140.4.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G04140.4 ID=NO08G04140.4|Name=NO08G04140.4|organism=Nannochloropsis oceanica|type=mRNA|length=1817bp
ACAGACATAATAATATGCGGGGAAATATCACCATGCCAGATTGTAGTGCA
ACAAAGAAGCTTCTGTTAATTGCAATTCTGACGGCTGTAGTGGTCGTCTT
CCTTTTTGAGCTGAACGGAACTCGGAGGCCTCTAGACCATATTGCTTACT
CTGAAATGCTCGCGCGGCAACGAAGCGCAAGCATCCCTAGCACACTAGAG
ATTCGTACAGCCATCGACGCACTAACCCATCAAGTGGAAAAGTTCCAAGA
ACTGGAGGACAGGCTACAGGCGATGACTATCGATCTTCAAAAGACAGCCG
ATGAGCTGGCCACCTACAAAGTCAAGGCTGAACACCAAGACAAATTAGAG
AATTTGGAGGATGTTACCCAGTCGCTTAGGATAGAAAACGAGCCGGAAGT
AAATGAGCTATTTACATGGTTTACGGATCGCCAAAAAGGTCCTGGGGCAC
ACAAGTGGTCCACATATCTTGATGCCTATCACCGACACTTCAACCGATTT
CGTACACAAGCCAAAATAACAATGGTAGAGGTGGGAGTGCAAAGCGGAGG
ATCTATCGAAATGTGGCGTTCGTACTTCGGGGCCGACAAGCTCAACTATA
TAGGAATAGACATTAACCCCGAATGCAAACAGTTTGAAAAGGACGGAGTT
CGCATTGTTATTGGTAATCAAGGGGACCCTGCGTTCTGGGAGCAATTCAA
AAAAGAAATCCCGGACGAGCTGGACATTTTTGTCGACGACGGAGGACACA
CCATGAACCAGCAAATTGTAACATTTGATAAGATGTTTTGGGGAGTTCGA
GATGGTGGTATTTACCTATGCGAAGATTTGCACACGAGTTACTGGCAGGA
ATATGAAGGTGGTTACCTCAACAACAATAGCATGATTGAGAAATCCAAAA
CACTCATCGATACCATCAATGCTTGGCATTCAAAAGAAGCGGGTTTGCAG
GTAAGGGGTTAAATCGCTAACCATATTCTATTTTTTTCAAGTACCTTCTC
TCGAGGATTCGCGCAGAAAATGATCCGAAAATAAGCTGGGGACGAAAAAT
CCGTCCCCAAAAAGTATCACCTTTTAGAAAATGAGATACTTGCAATACAA
TCACAAATTGCATAAATGCTCACTTATACCTCACCGGAATTTCGACAGGT
GAATAGTTTGACACGGAACATTCGAGGGTAAGTCATGGACCGAGACATGT
AGGTTCGCGGTGCAATAGAAACGATACGTATACTCAAGTCTACTACTCTC
CTTACGTTACACATATAGATTGCACTTCTATGATTCCATGATTTTCATTG
ACAAACGTGCAACGGAACCGATGGAAAGAATGAAGTCCGGTGATTATTGG
ATTGACGTATGAGATGCGGCTGGAGATGAGAATACCTTGTCCCTCAAACA
GGAACAGTGATTCAAGCCATGTTTGAGAAGCTGTCAGTATACATGTTTCC
GTAGCACATCAAACCAATGATTGCCTTTCCTATCTCTACATCCCAGAAGC
TCGATCGACGCCGCGTAAATGATCTCTCCTCGTCAATCGTTTCGCAATAT
TTATTTTTCATGTCTAGAAATGGCTACGCGTCTGGGGCGGCAAATGCTCA
TTTTTCGAGGTCCGAGTGAGTTTACTTATATAATCTATGTCTTTCTTTAT
AATCATATTCTCGTCGATGGGCTTTTGATCCCGCAATCGAGTTTCAATTA
CATTGACATAGTCGATGTGGACGCAATTCCAGGGTGCAATCAACCCTAAC
GCAGCATCATCTCGGTCGAAAATGTCTCACCACAACTGAAGAAAATAAAG
CTATGCTGTTATAAAAT
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protein sequence of NO08G04140.4

>NO08G04140.4-protein ID=NO08G04140.4-protein|Name=NO08G04140.4|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MRGNITMPDCSATKKLLLIAILTAVVVVFLFELNGTRRPLDHIAYSEMLA
RQRSASIPSTLEIRTAIDALTHQVEKFQELEDRLQAMTIDLQKTADELAT
YKVKAEHQDKLENLEDVTQSLRIENEPEVNELFTWFTDRQKGPGAHKWST
YLDAYHRHFNRFRTQAKITMVEVGVQSGGSIEMWRSYFGADKLNYIGIDI
NPECKQFEKDGVRIVIGNQGDPAFWEQFKKEIPDELDIFVDDGGHTMNQQ
IVTFDKMFWGVRDGGIYLCEDLHTSYWQEYEGGYLNNNSMIEKSKTLIDT
INAWHSKEAGLQVRG*
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mRNA from alignment at chr8:1192190..1194178+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G04140.4 ID=NO08G04140.4|Name=NO08G04140.4|organism=Nannochloropsis oceanica|type=mRNA|length=1989bp|location=Sequence derived from alignment at chr8:1192190..1194178+ (Nannochloropsis oceanica)
ACAGACATAATAATATGCGGGGAAATATCACCATGCCAGATTGTAGTGCA
ACAAAGAAGCTTCTGTTAATTGCAATTCTGACGGCTGTAGTGGTCGTCTT
CCTTTTTGAGCTGAACGGAACTCGGAGGCCTCTAGACCATATTGCTTACT
CTGAAATGCTCGCGCGGCAACGAAGCGCAAGGTAAGGGACCGATACCTGT
ATACAGTACGAGGATACAAATGGCCAAAATGGTTACAGATATTAATTTGA
ATTGTCCTTTATCTTGTCAGCATCCCTAGCACACTAGAGATTCGTACAGC
CATCGACGCACTAACCCATCAAGTGGAAAAGTTCCAAGAACTGGAGGACA
GGCTACAGGCGATGACTATCGATCTTCAAAAGACAGCCGATGAGCTGGCC
ACCTACAAAGTCAAGGCTGAACACCAAGACAAATTAGAGAATTTGGAGGA
TGTTACCCAGTCGCTTAGGATAGAAAACGAGCCGGAAGTAAATGAGCTAT
TTACATGGTTTACGGATCGCCAAAAAGGTCCTGGGGCACACAAGTGGTCC
ACATATCTTGATGCCTATCACCGACACTTCAACCGATTTCGTACACAAGC
CAAAATAACAATGGTAGAGGTGGGAGTGCAAAGCGGAGGATCTATCGAAA
TGTGGCGTTCGTACTTCGGGGCCGACAAGCTCAAGTAAGCACCTTTGATA
TAATTTAATTTAGACTTTCTCCCCGCTCAACCTGCAAGTAACTCAATTCT
CTTGTTACTTTTCTCAGCTATATAGGAATAGACATTAACCCCGAATGCAA
ACAGTTTGAAAAGGACGGAGTTCGCATTGTTATTGGTAATCAAGGGGACC
CTGCGTTCTGGGAGCAATTCAAAAAAGAAATCCCGGACGAGCTGGACATT
TTTGTCGACGACGGAGGACACACCATGAACCAGCAAATTGTAACATTTGA
TAAGATGTTTTGGGGAGTTCGAGATGGTGGTATTTACCTATGCGAAGATT
TGCACACGAGTTACTGGCAGGAATATGAAGGTGGTTACCTCAACAACAAT
AGCATGATTGAGAAATCCAAAACACTCATCGATACCATCAATGCTTGGCA
TTCAAAAGAAGCGGGTTTGCAGGTAAGGGGTTAAATCGCTAACCATATTC
TATTTTTTTCAAGTACCTTCTCTCGAGGATTCGCGCAGAAAATGATCCGA
AAATAAGCTGGGGACGAAAAATCCGTCCCCAAAAAGTATCACCTTTTAGA
AAATGAGATACTTGCAATACAATCACAAATTGCATAAATGCTCACTTATA
CCTCACCGGAATTTCGACAGGTGAATAGTTTGACACGGAACATTCGAGGG
TAAGTCATGGACCGAGACATGTAGGTTCGCGGTGCAATAGAAACGATACG
TATACTCAAGTCTACTACTCTCCTTACGTTACACATATAGATTGCACTTC
TATGATTCCATGATTTTCATTGACAAACGTGCAACGGAACCGATGGAAAG
AATGAAGTCCGGTGATTATTGGATTGACGTATGAGATGCGGCTGGAGATG
AGAATACCTTGTCCCTCAAACAGGAACAGTGATTCAAGCCATGTTTGAGA
AGCTGTCAGTATACATGTTTCCGTAGCACATCAAACCAATGATTGCCTTT
CCTATCTCTACATCCCAGAAGCTCGATCGACGCCGCGTAAATGATCTCTC
CTCGTCAATCGTTTCGCAATATTTATTTTTCATGTCTAGAAATGGCTACG
CGTCTGGGGCGGCAAATGCTCATTTTTCGAGGTCCGAGTGAGTTTACTTA
TATAATCTATGTCTTTCTTTATAATCATATTCTCGTCGATGGGCTTTTGA
TCCCGCAATCGAGTTTCAATTACATTGACATAGTCGATGTGGACGCAATT
CCAGGGTGCAATCAACCCTAACGCAGCATCATCTCGGTCGAAAATGTCTC
ACCACAACTGAAGAAAATAAAGCTATGCTGTTATAAAAT
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Coding sequence (CDS) from alignment at chr8:1192190..1194178+

>NO08G04140.4 ID=NO08G04140.4|Name=NO08G04140.4|organism=Nannochloropsis oceanica|type=CDS|length=948bp|location=Sequence derived from alignment at chr8:1192190..1194178+ (Nannochloropsis oceanica)
ATGCGGGGAAATATCACCATGCCAGATTGTAGTGCAACAAAGAAGCTTCT
GTTAATTGCAATTCTGACGGCTGTAGTGGTCGTCTTCCTTTTTGAGCTGA
ACGGAACTCGGAGGCCTCTAGACCATATTGCTTACTCTGAAATGCTCGCG
CGGCAACGAAGCGCAAGCATCCCTAGCACACTAGAGATTCGTACAGCCAT
CGACGCACTAACCCATCAAGTGGAAAAGTTCCAAGAACTGGAGGACAGGC
TACAGGCGATGACTATCGATCTTCAAAAGACAGCCGATGAGCTGGCCACC
TACAAAGTCAAGGCTGAACACCAAGACAAATTAGAGAATTTGGAGGATGT
TACCCAGTCGCTTAGGATAGAAAACGAGCCGGAAGTAAATGAGCTATTTA
CATGGTTTACGGATCGCCAAAAAGGTCCTGGGGCACACAAGTGGTCCACA
TATCTTGATGCCTATCACCGACACTTCAACCGATTTCGTACACAAGCCAA
AATAACAATGGTAGAGGTGGGAGTGCAAAGCGGAGGATCTATCGAAATGT
GGCGTTCGTACTTCGGGGCCGACAAGCTCAACTATATAGGAATAGACATT
AACCCCGAATGCAAACAGTTTGAAAAGGACGGAGTTCGCATTGTTATTGG
TAATCAAGGGGACCCTGCGTTCTGGGAGCAATTCAAAAAAGAAATCCCGG
ACGAGCTGGACATTTTTGTCGACGACGGAGGACACACCATGAACCAGCAA
ATTGTAACATTTGATAAGATGTTTTGGGGAGTTCGAGATGGTGGTATTTA
CCTATGCGAAGATTTGCACACGAGTTACTGGCAGGAATATGAAGGTGGTT
ACCTCAACAACAATAGCATGATTGAGAAATCCAAAACACTCATCGATACC
ATCAATGCTTGGCATTCAAAAGAAGCGGGTTTGCAGGTAAGGGGTTAA
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Synonyms
Publications