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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:1128453..1132044 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G04020.1 vs.
Match: EWM26855.1 (general transcription factor iih [Nannochloropsis gaditana]) HSP 1 Score: 356.7 bits (914), Expect = 1.100e-94 Identity = 236/443 (53.27%), Postives = 267/443 (60.27%), Query Frame = 0
Query: 1 MIEAGLEEEEPSILVIVIDADPTSWHHIHVTGERARAGDPSLPPSAKNLITFPHLLDTVLIFIDAYLLTHRANRVAVLATLPDRSEFLYPPP-PSSPPLPPCPSSSLPAVPNINSK----SSSSNQITAKTPVAHGPAAAAAAATGAAAFLAASLA-----------DRVSQAVVEGLNRLLTSKEFEDAQDDRHNDSAGIASSAMEQETNGHSSSFSSSSSPSSLTSAPKQNEKKQNSTASKRRRHGSLISQALSKGLCYIQRTARETSLSSSSSSSSSPLAARMLVLQASPDVHGDYNAFMNCIFSSHRSSVPIDAAVLSLPSSLHPSSASSSQHRKDSSFLQQASYITGGIYIRPERPSALLQYFLHLFLPSHRLRQVLRLPKQESVDFRAACFCHRRAVEQAYVCSVCLSIFCAFTKECPTCGTPARPPKGGGGGGGGR 428
M++AGLE EEP+ILVIVIDADP SW IH +GE AR D + + +TFPHLLDT+++FIDAYLLTHRANRVAV+A L D+S+FLYPPP P+ PP P S P I + ++ +Q V G A T A LA +RVS AV GL RLL ++ +A E G S + SL R S SQALSK LCYIQR RE S L+ARMLVLQAS D HGDYNAFMNC FS+ RSSVPIDAAV S P+S+H KDSSFLQQASYITGG+Y+RP+RP ALLQYFLHLFLPSH LRQ LRLPKQESVDFRAACFCHR+AVEQAYVCSVCLSIFCAF EC TCGTPARP KG G G G R
Sbjct: 1 MVDAGLEAEEPNILVIVIDADPASWQRIH-SGELARPQDRPSSEAPQIFMTFPHLLDTLMVFIDAYLLTHRANRVAVVAALHDKSDFLYPPPVPAPPPSDPPKSEGPTKAPVIKLEKMVYEAACDQHATVAAVEGGQDGVDALKTNGATSKGPPLAPVSPPSGGSESERVSHAVTRGLQRLLA-------------PTSAVALDGPEVSGPGARPEVSGPGARPSL-------------------RPVSRTSQALSKSLCYIQRALRE----------SPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVH----------KDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCGTPARPLKGSGKGAGRR 390
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G04020.1 ID=NO08G04020.1|Name=NO08G04020.1|organism=Nannochloropsis oceanica|type=mRNA|length=3354bp TCCCTCCCTACTTGTCCCCCTCCCTCCCCTCCACCCCTGCCTCCTTATGC AAGCTCCCCACCAAATACAGCTTGGAGACGCCGCTCTTACTGAACGACGA AATCTGCGAGCAGTACGCATCGATCTGTGTGGCTGTCATCACAGTCTCCA CCCGGTTAGGCTCTGCATTCCTCTCTTCCTCCTCCTCCCTCCGCTTCCCC CATGAACGATGCTCCCTCTGATGGTAGCCGCCCCTCCCTCCCTGTCCAGT GGCAAATCTCTTAATTTTCTCCAACTGTCCAGCCATTCGATCCACCTCCT CACTCAACAACTCCAAATTCCTTGACAAAAACGGATTGAACGACAAATCC AACTTTGTGAAATCCGCATCCACCCCTCCCACCTCTCCTTGTCTAGTCGC AGCAGCAGGAGCAGCAGCCACGGGGGTCGTCTCCTGCTGCATATCCCAAA GGAAGGCAGACACAATCCCAGCATTGCGAATCACCACAGGAATTTCCTCC AGAAGGTCTTTGAACGACACCACACCCTCCACCTCCTCCCTCGTGGTCGG CGTCCGCAAGTGCCTGTAGGCCTTCACTGTCAAATCACCCATTGCTGTCT GCACCGGGTCATAGAGTAAGACGATATTCGTCTCGGCCATCTCATCCACC AAAGCAGGAGGCACGTCAAACAGCGTGCGTTGCGCCCGCAAGCCCGACGC GTCTACCTTGCTTCCCCCCTCGGAGAAATGCCCCAATTGCATAGTACGGT ACCAACCTACCATATTACTATCCACATTCACTTCTTTAAGCATCTTCATC ATGTGCTTCTTGTATTCGTGCTTTGCCAGCTCGCTGCGTTCTTCCTCGTT TTCCTCCTCCTCCTGTCGGTTGTGCCCAGGCCTCTCATCTTGATAGCCCG CGTCCCGGCCTCGAGGCAAGGCGAAGGCGTACGTGACTTGCATCACCATC TTACCATTCTCTTTTGGCACGTCCAGGCCCAATAATGCCCCGGTGGAGGC CCCTGGCAAGTTGTCCTCGCAGTGCTTGACGATGCGGAGCAAAGCAGCCC CGTCGATTTGCACCTCGGAGATGAGGCCACGCGTCGAGGTGGTGGAAGGA GGGGGAAGGTCCGTCGATGGGTCCATGGCTACCTCTGTGTAGTTGTGTCG GTGGAAGTTGGAAGTGTGGGTGTGCAGGGTAAGTAGGAGGCTTGCAGGGT GAAGAACAAAATGATGGATGATGATGGTGGGTGGCAACGAGTGGATTCTG AGAATGGGTGAGGAGGCTAATCAGAAGCAAAATCAATTGCCGGGTGCTCC CGCGTCCGCTACAAACACAGAGTCTGCAAGGTTCTGTGTGTGGTGTGTGT TGCTTTGGGTGGCCGCAGGTGTGGTCGAGACAAGGAGAAATTTTATCTCT AGCTTCGTCTGAGCGGCTCCGGGAGGAGGAGCTGGCTTCGCTGATGGAAG GAACGCCGCTCCGTCAATGCCATTGCCTATTGTGCTCTATTTTTGAAGAC ATGCACGTTCCAAGATACAAAGAGGATAAGGAGGAGTAAGAGGAGAAGGA GGAAATAGAAATTATGCCGACGATATACAAGCAGCGTGCGAAACAAAACA AACTCTTGCGCTCACCATCCCCTCCTCCTACCTTTGCTTCTCCAACGGGC TAAGGCAAGGACAGCATGATAGAGGCCGGCCTGGAGGAAGAGGAACCGAG CATCCTAGTAATTGTCATTGACGCGGACCCTACCAGCTGGCATCACATTC ATGTGACAGGCGAACGCGCCCGTGCCGGCGACCCGTCCCTGCCCCCCTCT GCGAAAAACCTTATCACCTTTCCCCACCTCCTGGATACGGTGCTCATCTT CATCGACGCCTACTTATTAACACATCGAGCGAATCGGGTGGCAGTCCTGG CAACGCTCCCAGACAGGAGTGAGTTTCTTTATCCTCCTCCTCCTTCTTCT CCTCCTCTTCCTCCTTGCCCTTCTTCCTCATTACCAGCAGTACCGAACAT TAACAGCAAGAGCAGCAGCAGCAACCAAATAACTGCTAAAACACCAGTAG CACACGGACCTGCCGCAGCCGCAGCAGCAGCAACAGGAGCAGCAGCATTC CTAGCAGCCAGCCTCGCCGACCGCGTCAGCCAAGCAGTAGTAGAGGGACT GAATCGGCTCCTAACCTCCAAAGAATTCGAAGACGCACAAGACGATAGAC ATAATGACTCGGCAGGCATCGCGTCCTCAGCAATGGAACAAGAAACAAAC GGTCACTCCTCCTCCTTCTCCTCCTCTTCCTCCCCCTCCTCCCTCACCAG CGCCCCAAAACAAAATGAAAAGAAACAGAACTCCACCGCATCAAAACGAC GCCGCCACGGCTCCCTCATATCGCAAGCCCTTTCCAAAGGCCTCTGCTAC ATCCAACGCACTGCCCGCGAGACCTCCCTCTCTTCCTCCTCTTCCTCCTC CTCTTCCCCTCTTGCTGCGCGCATGCTGGTCTTGCAAGCCTCGCCTGACG TCCACGGAGACTACAATGCCTTTATGAACTGCATCTTCTCCTCACACCGT TCCTCCGTTCCCATTGATGCAGCCGTCCTTTCCCTCCCTTCTTCCCTCCA TCCCTCCTCCGCCTCCTCCTCGCAACACAGGAAAGACTCCTCTTTCCTGC AGCAAGCCTCCTACATTACCGGGGGCATATATATACGCCCTGAGCGGCCT TCTGCCCTTCTTCAGTACTTCCTTCACCTCTTCCTCCCTTCCCATCGCCT CAGACAAGTCTTGAGGTTACCCAAGCAAGAGTCAGTTGATTTTCGCGCGG CGTGTTTTTGCCATCGACGGGCAGTGGAGCAGGCCTATGTCTGCTCGGTG TGCCTGAGTATTTTTTGTGCCTTTACCAAAGAATGTCCCACGTGTGGGAC ACCGGCTAGACCGCCAAAAGGGGGTGGAGGAGGAGGAGGAGGAAGAGGAG GAGGAGGAGGAGGAGGAGGAGGAGGGAAGATGGGTAGGGAGTAGAGAAGC GGAAATAGGCAGGTGGGAATGGAGGGGTGTGCGAGGAAGGTCAGTGTAAT ACCATGTAAAGGATTCAAGTATAGAAGAAGAAGGGCGTAGCATAGAAGAA GAAGGAAAAAGATGCTGAAAATTAAGTTAAAAATAGTTGACACGTTGAGG GTATCCAACCAGTGGAAATCAACAATGCGATGGCTAAGCACGATTACTGG AACTCTTCTGTTTAGTTCTTTTTCCTGTAATTTCCTTCATTCCTAAAATT GTCGCGTGCAACCTATACCTGCAGAAAAATGCTACCTACCAGAGCACAAA CACATATTACAAATTACACACGAGGGAAAGCCTTCCTACAAAAACAAATT TTGT back to topprotein sequence of NO08G04020.1 >NO08G04020.1-protein ID=NO08G04020.1-protein|Name=NO08G04020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=443bp MIEAGLEEEEPSILVIVIDADPTSWHHIHVTGERARAGDPSLPPSAKNLI TFPHLLDTVLIFIDAYLLTHRANRVAVLATLPDRSEFLYPPPPSSPPLPP CPSSSLPAVPNINSKSSSSNQITAKTPVAHGPAAAAAAATGAAAFLAASL ADRVSQAVVEGLNRLLTSKEFEDAQDDRHNDSAGIASSAMEQETNGHSSS FSSSSSPSSLTSAPKQNEKKQNSTASKRRRHGSLISQALSKGLCYIQRTA RETSLSSSSSSSSSPLAARMLVLQASPDVHGDYNAFMNCIFSSHRSSVPI DAAVLSLPSSLHPSSASSSQHRKDSSFLQQASYITGGIYIRPERPSALLQ YFLHLFLPSHRLRQVLRLPKQESVDFRAACFCHRRAVEQAYVCSVCLSIF CAFTKECPTCGTPARPPKGGGGGGGGRGGGGGGGGGGKMGRE* back to topmRNA from alignment at chr8:1128453..1132044- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G04020.1 ID=NO08G04020.1|Name=NO08G04020.1|organism=Nannochloropsis oceanica|type=mRNA|length=3592bp|location=Sequence derived from alignment at chr8:1128453..1132044- (Nannochloropsis oceanica) TCCCTCCCTACTTGTCCCCCTCCCTCCCCTCCACCCCTGCCTCCTTATGC
AAGCTCCCCACCAAATACAGCTTGGAGACGCCGCTCTTACTGAACGACGA
AATCTGCGAGCAGTACGCATCGATCTGTGTGGCTGTCATCACAGTCTCCA
CCCGGTTAGGCTCTGCATTCCTCTCTTCCTCCTCCTCCCTCCGCTTCCCC
CATGAACGATGCTCCCTCTGATGGTAGCCGCCCCTCCCTCCCTGTCCAGT
GGCAAATCTCTTAATTTTCTCCAACTGTCCAGCCATTCGATCCACCTCCT
CACTCAACAACTCCAAATTCCTTGACAAAAACGGATTGAACGACAAATCC
AACTTTGTGAAATCCGCATCCACCCCTCCCACCTCTCCTTGTCTAGTCGC
AGCAGCAGGAGCAGCAGCCACGGGGGTCGTCTCCTGCTGCATATCCCAAA
GGAAGGCAGACACAATCCCAGCATTGCGAATCACCACAGGAATTTCCTCC
AGAAGGTCTTTGAACGACACCACACCCTCCACCTCCTCCCTCGTGGTCGG
CGTCCGCAAGTGCCTGTAGGCCTTCACTGTCAAATCACCCATTGCTGTCT
GCACCGGGTCATAGAGTAAGACGATATTCGTCTCGGCCATCTCATCCACC
AAAGCAGGAGGCACGTCAAACAGCGTGCGTTGCGCCCGCAAGCCCGACGC
GTCTACCTTGCTTCCCCCCTCGGAGAAATGCCCCAATTGCATAGTACGGT
ACCAACCTACCATATTACTATCCACATTCACTTCTTTAAGCATCTTCATC
ATGTGCTTCTTGTATTCGTGCTTTGCCAGCTCGCTGCGTTCTTCCTCGTT
TTCCTCCTCCTCCTGTCGGTTGTGCCCAGGCCTCTCATCTTGATAGCCCG
CGTCCCGGCCTCGAGGCAAGGCGAAGGCGTACGTGACTTGCATCACCATC
TTACCATTCTCTTTTGGCACGTCCAGGCCCAATAATGCCCCGGTGGAGGC
CCCTGGCAAGTTGTCCTCGCAGTGCTTGACGATGCGGAGCAAAGCAGCCC
CGTCGATTTGCACCTCGGAGATGAGGCCACGCGTCGAGGTGGTGGAAGGA
GGGGGAAGGTCCGTCGATGGGTCCATGGCTACCTCTGTGTAGTTGTGTCG
GTGGAAGTTGGAAGTGTGGGTGTGCAGGGTAAGTAGGAGGCTTGCAGGGT
GAAGAACAAAATGATGGATGATGATGGTGGGTGGCAACGAGTGGATTCTG
AGAATGGGTGAGGAGGCTAATCAGAAGCAAAATCAATTGCCGGGTGCTCC
CGCGTCCGCTACAAACACAGAGTCTGCAAGGTTCTGTGTGTGGTGTGTGT
TGCTTTGGGTGGCCGCAGGTGTGGTCGAGACAAGGAGAAATTTTATCTCT
AGCTTCGTCTGAGCGGCTCCGGGAGGAGGAGCTGGCTTCGCTGATGGAAG
GAACGCCGCTCCGTCAATGCCATTGCCTATTGTGCTCTATTTTTGAAGAC
ATGCACGTTCCAAGATACAAAGAGGATAAGGAGGAGTAAGAGGAGAAGGA
GGAAATAGAAATTATGCCGACGATATACAAGCAGCGTGCGAAACAAAACA
AACTCTTGCGCTCACCATCCCCTCCTCCTACCTTTGCTTCTCCAACGGGC
TAAGGCAAGGACAGCATGATAGAGGCCGGCCTGGAGGAAGAGGAACCGAG
CATCCTAGTAATTGTCATTGACGCGGACCCTACCAGCTGGCATCACATTC
ATGGTATGTTGCGGTTCAAGTGCCCCTCTTCCTTTCCGCCTTCCTCCCTC
CCCCATCTGCCCTTGGCCAACCAGCTATTACAACCCTTGCCCTGACCCCT
TACCTTACCTGTGCGCCATCCCCGCTCCTCCTCCTCTTTGGACGATCATC
CCCATACTTTTCCAAATCCTTCGCATGCTGCAAGTGCCAGTCCTTAATTC
TTCTGTCCCCCTGCTCCTTCCCTTCTGATCTCTTCCTACAGTGACAGGCG
AACGCGCCCGTGCCGGCGACCCGTCCCTGCCCCCCTCTGCGAAAAACCTT
ATCACCTTTCCCCACCTCCTGGATACGGTGCTCATCTTCATCGACGCCTA
CTTATTAACACATCGAGCGAATCGGGTGGCAGTCCTGGCAACGCTCCCAG
ACAGGAGTGAGTTTCTTTATCCTCCTCCTCCTTCTTCTCCTCCTCTTCCT
CCTTGCCCTTCTTCCTCATTACCAGCAGTACCGAACATTAACAGCAAGAG
CAGCAGCAGCAACCAAATAACTGCTAAAACACCAGTAGCACACGGACCTG
CCGCAGCCGCAGCAGCAGCAACAGGAGCAGCAGCATTCCTAGCAGCCAGC
CTCGCCGACCGCGTCAGCCAAGCAGTAGTAGAGGGACTGAATCGGCTCCT
AACCTCCAAAGAATTCGAAGACGCACAAGACGATAGACATAATGACTCGG
CAGGCATCGCGTCCTCAGCAATGGAACAAGAAACAAACGGTCACTCCTCC
TCCTTCTCCTCCTCTTCCTCCCCCTCCTCCCTCACCAGCGCCCCAAAACA
AAATGAAAAGAAACAGAACTCCACCGCATCAAAACGACGCCGCCACGGCT
CCCTCATATCGCAAGCCCTTTCCAAAGGCCTCTGCTACATCCAACGCACT
GCCCGCGAGACCTCCCTCTCTTCCTCCTCTTCCTCCTCCTCTTCCCCTCT
TGCTGCGCGCATGCTGGTCTTGCAAGCCTCGCCTGACGTCCACGGAGACT
ACAATGCCTTTATGAACTGCATCTTCTCCTCACACCGTTCCTCCGTTCCC
ATTGATGCAGCCGTCCTTTCCCTCCCTTCTTCCCTCCATCCCTCCTCCGC
CTCCTCCTCGCAACACAGGAAAGACTCCTCTTTCCTGCAGCAAGCCTCCT
ACATTACCGGGGGCATATATATACGCCCTGAGCGGCCTTCTGCCCTTCTT
CAGTACTTCCTTCACCTCTTCCTCCCTTCCCATCGCCTCAGACAAGTCTT
GAGGTTACCCAAGCAAGAGTCAGTTGATTTTCGCGCGGCGTGTTTTTGCC
ATCGACGGGCAGTGGAGCAGGCCTATGTCTGCTCGGTGTGCCTGAGTATT
TTTTGTGCCTTTACCAAAGAATGTCCCACGTGTGGGACACCGGCTAGACC
GCCAAAAGGGGGTGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGGAAGATGGGTAGGGAGTAGAGAAGCGGAAATAGGCAG
GTGGGAATGGAGGGGTGTGCGAGGAAGGTCAGTGTAATACCATGTAAAGG
ATTCAAGTATAGAAGAAGAAGGGCGTAGCATAGAAGAAGAAGGAAAAAGA
TGCTGAAAATTAAGTTAAAAATAGTTGACACGTTGAGGGTATCCAACCAG
TGGAAATCAACAATGCGATGGCTAAGCACGATTACTGGAACTCTTCTGTT
TAGTTCTTTTTCCTGTAATTTCCTTCATTCCTAAAATTGTCGCGTGCAAC
CTATACCTGCAGAAAAATGCTACCTACCAGAGCACAAACACATATTACAA
ATTACACACGAGGGAAAGCCTTCCTACAAAAACAAATTTTGT back to topCoding sequence (CDS) from alignment at chr8:1128453..1132044- >NO08G04020.1 ID=NO08G04020.1|Name=NO08G04020.1|organism=Nannochloropsis oceanica|type=CDS|length=1329bp|location=Sequence derived from alignment at chr8:1128453..1132044- (Nannochloropsis oceanica) ATGATAGAGGCCGGCCTGGAGGAAGAGGAACCGAGCATCCTAGTAATTGT CATTGACGCGGACCCTACCAGCTGGCATCACATTCATGTGACAGGCGAAC GCGCCCGTGCCGGCGACCCGTCCCTGCCCCCCTCTGCGAAAAACCTTATC ACCTTTCCCCACCTCCTGGATACGGTGCTCATCTTCATCGACGCCTACTT ATTAACACATCGAGCGAATCGGGTGGCAGTCCTGGCAACGCTCCCAGACA GGAGTGAGTTTCTTTATCCTCCTCCTCCTTCTTCTCCTCCTCTTCCTCCT TGCCCTTCTTCCTCATTACCAGCAGTACCGAACATTAACAGCAAGAGCAG CAGCAGCAACCAAATAACTGCTAAAACACCAGTAGCACACGGACCTGCCG CAGCCGCAGCAGCAGCAACAGGAGCAGCAGCATTCCTAGCAGCCAGCCTC GCCGACCGCGTCAGCCAAGCAGTAGTAGAGGGACTGAATCGGCTCCTAAC CTCCAAAGAATTCGAAGACGCACAAGACGATAGACATAATGACTCGGCAG GCATCGCGTCCTCAGCAATGGAACAAGAAACAAACGGTCACTCCTCCTCC TTCTCCTCCTCTTCCTCCCCCTCCTCCCTCACCAGCGCCCCAAAACAAAA TGAAAAGAAACAGAACTCCACCGCATCAAAACGACGCCGCCACGGCTCCC TCATATCGCAAGCCCTTTCCAAAGGCCTCTGCTACATCCAACGCACTGCC CGCGAGACCTCCCTCTCTTCCTCCTCTTCCTCCTCCTCTTCCCCTCTTGC TGCGCGCATGCTGGTCTTGCAAGCCTCGCCTGACGTCCACGGAGACTACA ATGCCTTTATGAACTGCATCTTCTCCTCACACCGTTCCTCCGTTCCCATT GATGCAGCCGTCCTTTCCCTCCCTTCTTCCCTCCATCCCTCCTCCGCCTC CTCCTCGCAACACAGGAAAGACTCCTCTTTCCTGCAGCAAGCCTCCTACA TTACCGGGGGCATATATATACGCCCTGAGCGGCCTTCTGCCCTTCTTCAG TACTTCCTTCACCTCTTCCTCCCTTCCCATCGCCTCAGACAAGTCTTGAG GTTACCCAAGCAAGAGTCAGTTGATTTTCGCGCGGCGTGTTTTTGCCATC GACGGGCAGTGGAGCAGGCCTATGTCTGCTCGGTGTGCCTGAGTATTTTT TGTGCCTTTACCAAAGAATGTCCCACGTGTGGGACACCGGCTAGACCGCC AAAAGGGGGTGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAG GAGGAGGAGGGAAGATGGGTAGGGAGTAG back to top
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