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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:1094911..1097037 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G03890.1 vs.
Match: XP_005854008.1 (b chain of rna processing factor scaf8, partial [Nannochloropsis gaditana CCMP526]; XP_005854243.1 b chain of rna processing factor scaf8, partial [Nannochloropsis gaditana CCMP526]; EKU22116.1 b chain of rna processing factor scaf8, partial [Nannochloropsis gaditana CCMP526]; EKU22351.1 b chain of rna processing factor scaf8, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 223.4 bits (568), Expect = 1.800e-54 Identity = 120/179 (67.04%), Postives = 140/179 (78.21%), Query Frame = 0
Query: 5 DDKELLDLKTLLDNMCAAPLPITKEQISGVAECAMRHVQKYKKVVHLIERYAKHYAGARYRSAIICVIDSLCTKAHRAHKEKDVFIPRFRLRLLDTVQGLTALEGRSEKKLMDRIFLEWRKRGWFDVPSLAVLAEGGGGGKSRGASS--ATSGSSSSPSRHSNPSDANSSGFTPPLPPP 182
DD+EL LK LLD++CA+ LPITKE+IS VAECA+R+VQKYKKVVH+IERYAKHYAG RYRSA+ICVIDSLCTKAHRAHKEKDVFIPRFRLRLL+T+QG+T LEGRSE+ LMDRIF+EWRKRGWFDVP LA LA G +RG + G + + ++ S TPP PP
Sbjct: 25 DDEELRPLKDLLDDLCASSLPITKEKISKVAECALRYVQKYKKVVHMIERYAKHYAGVRYRSAVICVIDSLCTKAHRAHKEKDVFIPRFRLRLLETLQGVTTLEGRSERALMDRIFVEWRKRGWFDVPPLATLAGEKEGKPTRGTQNPQGQEGPRKRGKKRTGSTEVLES-TTPPYDPP 202
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G03890.1 ID=NO08G03890.1|Name=NO08G03890.1|organism=Nannochloropsis oceanica|type=mRNA|length=2127bp AACAGCTTTGAGGACAGCTAGTATCATCTGGATCGCCTGGTCGGGCCGCT TACTTCCCGGTTCCTGTTAGAATCCGCCTTGTAACGCGCCATCCTTTCCG GCCATCCTCCCCATCATCACCCTATTGCTCCCCCAGCCCCTCCTTCTTTA GCAGAATCATAACATCTCTATTACGCAGCTGTCATGAACCAAAACGATGA TAAGGAACTGCTGGACCTCAAAACTCTCCTAGACAACATGTGCGCCGCTC CCCTGCCCATCACAAAGGAGCAAATCTCAGGCGTGGCCGAATGCGCCATG CGACACGTCCAGAAGTACAAGAAAGTGGTGCATCTCATCGAGCGATATGC CAAGCACTACGCGGGTGCGCGGTACCGTTCTGCTATTATCTGTGTGATTG ATTCCCTGTGCACCAAAGCCCATCGCGCCCACAAGGAGAAGGACGTTTTC ATCCCTCGTTTTCGTCTCCGGCTTCTAGATACGGTGCAGGGCCTAACGGC GTTGGAAGGGCGGTCAGAAAAGAAATTGATGGATCGGATCTTTCTAGAGT GGCGGAAACGTGGTTGGTTTGACGTTCCAAGTTTGGCTGTCCTGGCCGAG GGTGGAGGAGGGGGAAAGTCCCGCGGCGCCAGCAGTGCCACCAGCGGCAG CTCCAGCAGCCCTAGCAGGCATAGCAACCCCTCCGATGCAAACTCCTCGG GCTTCACGCCACCGTTGCCTCCCCCTCCACCACCTCCTCCTCCATCTGGA GATGCATGGCACCAGCCGCAACTACAGCCGCAACAACACCGTGAAGAGGA CAATGGCAGCAGCTCAGGCCTACGTTCCCCTCCTCCCTCCCCGGGCCCCG ACAGCAGACCTTCTCCCCCCCCTCCTCCTCCCTCCCTCCCTTCCCCTATC CCCATGAATTTACCCCTCGATGTGCCCGGCCGTTCGACAGCAGTAGCAGC TCTTGATCCCCGTAAACGTCTTGCTGCTGCTCCTGCTGCTGCTCCTGCTG CTCCTGCTTCCACCTCCCCCTCTCGTGCAGGAACAGCAGCAGCAGTAGCA ACAGAAGCAGAAGCTCCGCTTGATCCTCGCAAACGCATCAAGTCCTCTCC AGCAGCAGCTGCACTAACAACAACAACAACAAAAAGAACAACGGGAGCAC CGGCTGCACTGGACCTCCCTCCCCCCGTATCTTCTTCGTCTTTCGGTAAT GGGGGGAGGGGGAGGTTACTCCTGGCAGGCGACAGGGAGGAGGATGAGGA GGAGGAAGACGAAGAACTCAATTTAGAGGGAGTAGGTATGGGTCAAGCAC CTCCTCCCTCGTCCTCCTCCTCCAAACACCCCTCCTCTTCATCGCGCCCC CCCTCACGACCTTCTACTCTTCCCTCCTTCTCCTCCTCCTCCTCCTCCTC CTTCACCGCCATCGCCATCCCAACCCCATCCCCATCTCTCCTCGCCTCCC TCCAAGCAAACCCTCCCTCCTACTCCTGCAGCACCACCGCCGATAGCTGT CGTACGAAAGTGCACACGATGCTCAACAAATTTCTCGCCGGCTTCCAAGG GAAGGAAGGAGGGAAAATACCTGCCTGGCCCCAGACCTTCCTTTCCTCCC TCCCCTCCTCGTCCTCCTCGCGTTTCCCCCCCTTGTCCGCTTCGCCTTAC TTCCCCGTCGTCCCGGGAGGGGAGGGAGGGAGTGGGGGAGCGGGGGAAGA GCTGCCATCCGTAATGAGTACTGTTCCCGGACTGCACCTGGCGCATCGCA GGGTCTCCCTCGATGATGGAGCGGGAGCAGGGAAGGCAGGGAGGGAGGGA GGGAAAGAAGGAACAAAGGGTGTGAAAGTAGAAGCGGTGCCCGTAGTGGC TCGGCGGTGGGGGAGGGCATCAGCAGCGCCGTCGTAGGGAGGGAGAAAAT AGAAAAAGGGAGGGGAGATGAGGGAGATGGGATGAAATAGAGCGACTGGG AATGGGGAAGGGGGGGAGATAGAAGACACGTAAGGTTGAAGACAAAAGAA AAGGAAAGGAAAGAAAAACACATACAAACCTAAAAACTTGTGTATGAATG AGGATGTATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTATGT back to topprotein sequence of NO08G03890.1 >NO08G03890.1-protein ID=NO08G03890.1-protein|Name=NO08G03890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=568bp MNQNDDKELLDLKTLLDNMCAAPLPITKEQISGVAECAMRHVQKYKKVVH LIERYAKHYAGARYRSAIICVIDSLCTKAHRAHKEKDVFIPRFRLRLLDT VQGLTALEGRSEKKLMDRIFLEWRKRGWFDVPSLAVLAEGGGGGKSRGAS SATSGSSSSPSRHSNPSDANSSGFTPPLPPPPPPPPPSGDAWHQPQLQPQ QHREEDNGSSSGLRSPPPSPGPDSRPSPPPPPPSLPSPIPMNLPLDVPGR STAVAALDPRKRLAAAPAAAPAAPASTSPSRAGTAAAVATEAEAPLDPRK RIKSSPAAAALTTTTTKRTTGAPAALDLPPPVSSSSFGNGGRGRLLLAGD REEDEEEEDEELNLEGVGMGQAPPPSSSSSKHPSSSSRPPSRPSTLPSFS SSSSSSFTAIAIPTPSPSLLASLQANPPSYSCSTTADSCRTKVHTMLNKF LAGFQGKEGGKIPAWPQTFLSSLPSSSSSRFPPLSASPYFPVVPGGEGGS GGAGEELPSVMSTVPGLHLAHRRVSLDDGAGAGKAGREGGKEGTKGVKVE AVPVVARRWGRASAAPS* back to topmRNA from alignment at chr8:1094911..1097037+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G03890.1 ID=NO08G03890.1|Name=NO08G03890.1|organism=Nannochloropsis oceanica|type=mRNA|length=2127bp|location=Sequence derived from alignment at chr8:1094911..1097037+ (Nannochloropsis oceanica) AACAGCTTTGAGGACAGCTAGTATCATCTGGATCGCCTGGTCGGGCCGCT
TACTTCCCGGTTCCTGTTAGAATCCGCCTTGTAACGCGCCATCCTTTCCG
GCCATCCTCCCCATCATCACCCTATTGCTCCCCCAGCCCCTCCTTCTTTA
GCAGAATCATAACATCTCTATTACGCAGCTGTCATGAACCAAAACGATGA
TAAGGAACTGCTGGACCTCAAAACTCTCCTAGACAACATGTGCGCCGCTC
CCCTGCCCATCACAAAGGAGCAAATCTCAGGCGTGGCCGAATGCGCCATG
CGACACGTCCAGAAGTACAAGAAAGTGGTGCATCTCATCGAGCGATATGC
CAAGCACTACGCGGGTGCGCGGTACCGTTCTGCTATTATCTGTGTGATTG
ATTCCCTGTGCACCAAAGCCCATCGCGCCCACAAGGAGAAGGACGTTTTC
ATCCCTCGTTTTCGTCTCCGGCTTCTAGATACGGTGCAGGGCCTAACGGC
GTTGGAAGGGCGGTCAGAAAAGAAATTGATGGATCGGATCTTTCTAGAGT
GGCGGAAACGTGGTTGGTTTGACGTTCCAAGTTTGGCTGTCCTGGCCGAG
GGTGGAGGAGGGGGAAAGTCCCGCGGCGCCAGCAGTGCCACCAGCGGCAG
CTCCAGCAGCCCTAGCAGGCATAGCAACCCCTCCGATGCAAACTCCTCGG
GCTTCACGCCACCGTTGCCTCCCCCTCCACCACCTCCTCCTCCATCTGGA
GATGCATGGCACCAGCCGCAACTACAGCCGCAACAACACCGTGAAGAGGA
CAATGGCAGCAGCTCAGGCCTACGTTCCCCTCCTCCCTCCCCGGGCCCCG
ACAGCAGACCTTCTCCCCCCCCTCCTCCTCCCTCCCTCCCTTCCCCTATC
CCCATGAATTTACCCCTCGATGTGCCCGGCCGTTCGACAGCAGTAGCAGC
TCTTGATCCCCGTAAACGTCTTGCTGCTGCTCCTGCTGCTGCTCCTGCTG
CTCCTGCTTCCACCTCCCCCTCTCGTGCAGGAACAGCAGCAGCAGTAGCA
ACAGAAGCAGAAGCTCCGCTTGATCCTCGCAAACGCATCAAGTCCTCTCC
AGCAGCAGCTGCACTAACAACAACAACAACAAAAAGAACAACGGGAGCAC
CGGCTGCACTGGACCTCCCTCCCCCCGTATCTTCTTCGTCTTTCGGTAAT
GGGGGGAGGGGGAGGTTACTCCTGGCAGGCGACAGGGAGGAGGATGAGGA
GGAGGAAGACGAAGAACTCAATTTAGAGGGAGTAGGTATGGGTCAAGCAC
CTCCTCCCTCGTCCTCCTCCTCCAAACACCCCTCCTCTTCATCGCGCCCC
CCCTCACGACCTTCTACTCTTCCCTCCTTCTCCTCCTCCTCCTCCTCCTC
CTTCACCGCCATCGCCATCCCAACCCCATCCCCATCTCTCCTCGCCTCCC
TCCAAGCAAACCCTCCCTCCTACTCCTGCAGCACCACCGCCGATAGCTGT
CGTACGAAAGTGCACACGATGCTCAACAAATTTCTCGCCGGCTTCCAAGG
GAAGGAAGGAGGGAAAATACCTGCCTGGCCCCAGACCTTCCTTTCCTCCC
TCCCCTCCTCGTCCTCCTCGCGTTTCCCCCCCTTGTCCGCTTCGCCTTAC
TTCCCCGTCGTCCCGGGAGGGGAGGGAGGGAGTGGGGGAGCGGGGGAAGA
GCTGCCATCCGTAATGAGTACTGTTCCCGGACTGCACCTGGCGCATCGCA
GGGTCTCCCTCGATGATGGAGCGGGAGCAGGGAAGGCAGGGAGGGAGGGA
GGGAAAGAAGGAACAAAGGGTGTGAAAGTAGAAGCGGTGCCCGTAGTGGC
TCGGCGGTGGGGGAGGGCATCAGCAGCGCCGTCGTAGGGAGGGAGAAAAT
AGAAAAAGGGAGGGGAGATGAGGGAGATGGGATGAAATAGAGCGACTGGG
AATGGGGAAGGGGGGGAGATAGAAGACACGTAAGGTTGAAGACAAAAGAA
AAGGAAAGGAAAGAAAAACACATACAAACCTAAAAACTTGTGTATGAATG
AGGATGTATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTATGT back to topCoding sequence (CDS) from alignment at chr8:1094911..1097037+ >NO08G03890.1 ID=NO08G03890.1|Name=NO08G03890.1|organism=Nannochloropsis oceanica|type=CDS|length=1704bp|location=Sequence derived from alignment at chr8:1094911..1097037+ (Nannochloropsis oceanica) ATGAACCAAAACGATGATAAGGAACTGCTGGACCTCAAAACTCTCCTAGA CAACATGTGCGCCGCTCCCCTGCCCATCACAAAGGAGCAAATCTCAGGCG TGGCCGAATGCGCCATGCGACACGTCCAGAAGTACAAGAAAGTGGTGCAT CTCATCGAGCGATATGCCAAGCACTACGCGGGTGCGCGGTACCGTTCTGC TATTATCTGTGTGATTGATTCCCTGTGCACCAAAGCCCATCGCGCCCACA AGGAGAAGGACGTTTTCATCCCTCGTTTTCGTCTCCGGCTTCTAGATACG GTGCAGGGCCTAACGGCGTTGGAAGGGCGGTCAGAAAAGAAATTGATGGA TCGGATCTTTCTAGAGTGGCGGAAACGTGGTTGGTTTGACGTTCCAAGTT TGGCTGTCCTGGCCGAGGGTGGAGGAGGGGGAAAGTCCCGCGGCGCCAGC AGTGCCACCAGCGGCAGCTCCAGCAGCCCTAGCAGGCATAGCAACCCCTC CGATGCAAACTCCTCGGGCTTCACGCCACCGTTGCCTCCCCCTCCACCAC CTCCTCCTCCATCTGGAGATGCATGGCACCAGCCGCAACTACAGCCGCAA CAACACCGTGAAGAGGACAATGGCAGCAGCTCAGGCCTACGTTCCCCTCC TCCCTCCCCGGGCCCCGACAGCAGACCTTCTCCCCCCCCTCCTCCTCCCT CCCTCCCTTCCCCTATCCCCATGAATTTACCCCTCGATGTGCCCGGCCGT TCGACAGCAGTAGCAGCTCTTGATCCCCGTAAACGTCTTGCTGCTGCTCC TGCTGCTGCTCCTGCTGCTCCTGCTTCCACCTCCCCCTCTCGTGCAGGAA CAGCAGCAGCAGTAGCAACAGAAGCAGAAGCTCCGCTTGATCCTCGCAAA CGCATCAAGTCCTCTCCAGCAGCAGCTGCACTAACAACAACAACAACAAA AAGAACAACGGGAGCACCGGCTGCACTGGACCTCCCTCCCCCCGTATCTT CTTCGTCTTTCGGTAATGGGGGGAGGGGGAGGTTACTCCTGGCAGGCGAC AGGGAGGAGGATGAGGAGGAGGAAGACGAAGAACTCAATTTAGAGGGAGT AGGTATGGGTCAAGCACCTCCTCCCTCGTCCTCCTCCTCCAAACACCCCT CCTCTTCATCGCGCCCCCCCTCACGACCTTCTACTCTTCCCTCCTTCTCC TCCTCCTCCTCCTCCTCCTTCACCGCCATCGCCATCCCAACCCCATCCCC ATCTCTCCTCGCCTCCCTCCAAGCAAACCCTCCCTCCTACTCCTGCAGCA CCACCGCCGATAGCTGTCGTACGAAAGTGCACACGATGCTCAACAAATTT CTCGCCGGCTTCCAAGGGAAGGAAGGAGGGAAAATACCTGCCTGGCCCCA GACCTTCCTTTCCTCCCTCCCCTCCTCGTCCTCCTCGCGTTTCCCCCCCT TGTCCGCTTCGCCTTACTTCCCCGTCGTCCCGGGAGGGGAGGGAGGGAGT GGGGGAGCGGGGGAAGAGCTGCCATCCGTAATGAGTACTGTTCCCGGACT GCACCTGGCGCATCGCAGGGTCTCCCTCGATGATGGAGCGGGAGCAGGGA AGGCAGGGAGGGAGGGAGGGAAAGAAGGAACAAAGGGTGTGAAAGTAGAA GCGGTGCCCGTAGTGGCTCGGCGGTGGGGGAGGGCATCAGCAGCGCCGTC GTAG back to top
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