NO08G03890.1, NO08G03890.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G03890.1
Unique Name	NO08G03890.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2127
Alignment location	chr8:1094911..1097037 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:1094911..1097037 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO08G03890.1 vs.
Match: XP_005854008.1 (b chain of rna processing factor scaf8, partial [Nannochloropsis gaditana CCMP526]; XP_005854243.1 b chain of rna processing factor scaf8, partial [Nannochloropsis gaditana CCMP526]; EKU22116.1 b chain of rna processing factor scaf8, partial [Nannochloropsis gaditana CCMP526]; EKU22351.1 b chain of rna processing factor scaf8, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 223.4 bits (568), Expect = 1.800e-54
Identity = 120/179 (67.04%), Postives = 140/179 (78.21%), Query Frame = 0

Query:    5 DDKELLDLKTLLDNMCAAPLPITKEQISGVAECAMRHVQKYKKVVHLIERYAKHYAGARYRSAIICVIDSLCTKAHRAHKEKDVFIPRFRLRLLDTVQGLTALEGRSEKKLMDRIFLEWRKRGWFDVPSLAVLAEGGGGGKSRGASS--ATSGSSSSPSRHSNPSDANSSGFTPPLPPP 182
            DD+EL  LK LLD++CA+ LPITKE+IS VAECA+R+VQKYKKVVH+IERYAKHYAG RYRSA+ICVIDSLCTKAHRAHKEKDVFIPRFRLRLL+T+QG+T LEGRSE+ LMDRIF+EWRKRGWFDVP LA LA    G  +RG  +     G      + +  ++   S  TPP  PP
Sbjct:   25 DDEELRPLKDLLDDLCASSLPITKEKISKVAECALRYVQKYKKVVHMIERYAKHYAGVRYRSAVICVIDSLCTKAHRAHKEKDVFIPRFRLRLLETLQGVTTLEGRSERALMDRIFVEWRKRGWFDVPPLATLAGEKEGKPTRGTQNPQGQEGPRKRGKKRTGSTEVLES-TTPPYDPP 202

The following BLAST results are available for this feature:

BLAST of NO08G03890.1 vs.

BLAST of NO08G03890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005854008.1	1.800e-54	67.04	b chain of rna processing factor scaf8, partial [N...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G03890	NO08G03890	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G03890.1	NO08G03890.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G03890.1.cds1	NO08G03890.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:1094911..1097037+
coding sequence from alignment at chr8:1094911..1097037+

mRNA sequence

>NO08G03890.1 ID=NO08G03890.1|Name=NO08G03890.1|organism=Nannochloropsis oceanica|type=mRNA|length=2127bp
AACAGCTTTGAGGACAGCTAGTATCATCTGGATCGCCTGGTCGGGCCGCT
TACTTCCCGGTTCCTGTTAGAATCCGCCTTGTAACGCGCCATCCTTTCCG
GCCATCCTCCCCATCATCACCCTATTGCTCCCCCAGCCCCTCCTTCTTTA
GCAGAATCATAACATCTCTATTACGCAGCTGTCATGAACCAAAACGATGA
TAAGGAACTGCTGGACCTCAAAACTCTCCTAGACAACATGTGCGCCGCTC
CCCTGCCCATCACAAAGGAGCAAATCTCAGGCGTGGCCGAATGCGCCATG
CGACACGTCCAGAAGTACAAGAAAGTGGTGCATCTCATCGAGCGATATGC
CAAGCACTACGCGGGTGCGCGGTACCGTTCTGCTATTATCTGTGTGATTG
ATTCCCTGTGCACCAAAGCCCATCGCGCCCACAAGGAGAAGGACGTTTTC
ATCCCTCGTTTTCGTCTCCGGCTTCTAGATACGGTGCAGGGCCTAACGGC
GTTGGAAGGGCGGTCAGAAAAGAAATTGATGGATCGGATCTTTCTAGAGT
GGCGGAAACGTGGTTGGTTTGACGTTCCAAGTTTGGCTGTCCTGGCCGAG
GGTGGAGGAGGGGGAAAGTCCCGCGGCGCCAGCAGTGCCACCAGCGGCAG
CTCCAGCAGCCCTAGCAGGCATAGCAACCCCTCCGATGCAAACTCCTCGG
GCTTCACGCCACCGTTGCCTCCCCCTCCACCACCTCCTCCTCCATCTGGA
GATGCATGGCACCAGCCGCAACTACAGCCGCAACAACACCGTGAAGAGGA
CAATGGCAGCAGCTCAGGCCTACGTTCCCCTCCTCCCTCCCCGGGCCCCG
ACAGCAGACCTTCTCCCCCCCCTCCTCCTCCCTCCCTCCCTTCCCCTATC
CCCATGAATTTACCCCTCGATGTGCCCGGCCGTTCGACAGCAGTAGCAGC
TCTTGATCCCCGTAAACGTCTTGCTGCTGCTCCTGCTGCTGCTCCTGCTG
CTCCTGCTTCCACCTCCCCCTCTCGTGCAGGAACAGCAGCAGCAGTAGCA
ACAGAAGCAGAAGCTCCGCTTGATCCTCGCAAACGCATCAAGTCCTCTCC
AGCAGCAGCTGCACTAACAACAACAACAACAAAAAGAACAACGGGAGCAC
CGGCTGCACTGGACCTCCCTCCCCCCGTATCTTCTTCGTCTTTCGGTAAT
GGGGGGAGGGGGAGGTTACTCCTGGCAGGCGACAGGGAGGAGGATGAGGA
GGAGGAAGACGAAGAACTCAATTTAGAGGGAGTAGGTATGGGTCAAGCAC
CTCCTCCCTCGTCCTCCTCCTCCAAACACCCCTCCTCTTCATCGCGCCCC
CCCTCACGACCTTCTACTCTTCCCTCCTTCTCCTCCTCCTCCTCCTCCTC
CTTCACCGCCATCGCCATCCCAACCCCATCCCCATCTCTCCTCGCCTCCC
TCCAAGCAAACCCTCCCTCCTACTCCTGCAGCACCACCGCCGATAGCTGT
CGTACGAAAGTGCACACGATGCTCAACAAATTTCTCGCCGGCTTCCAAGG
GAAGGAAGGAGGGAAAATACCTGCCTGGCCCCAGACCTTCCTTTCCTCCC
TCCCCTCCTCGTCCTCCTCGCGTTTCCCCCCCTTGTCCGCTTCGCCTTAC
TTCCCCGTCGTCCCGGGAGGGGAGGGAGGGAGTGGGGGAGCGGGGGAAGA
GCTGCCATCCGTAATGAGTACTGTTCCCGGACTGCACCTGGCGCATCGCA
GGGTCTCCCTCGATGATGGAGCGGGAGCAGGGAAGGCAGGGAGGGAGGGA
GGGAAAGAAGGAACAAAGGGTGTGAAAGTAGAAGCGGTGCCCGTAGTGGC
TCGGCGGTGGGGGAGGGCATCAGCAGCGCCGTCGTAGGGAGGGAGAAAAT
AGAAAAAGGGAGGGGAGATGAGGGAGATGGGATGAAATAGAGCGACTGGG
AATGGGGAAGGGGGGGAGATAGAAGACACGTAAGGTTGAAGACAAAAGAA
AAGGAAAGGAAAGAAAAACACATACAAACCTAAAAACTTGTGTATGAATG
AGGATGTATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTATGT

protein sequence of NO08G03890.1

>NO08G03890.1-protein ID=NO08G03890.1-protein|Name=NO08G03890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=568bp
MNQNDDKELLDLKTLLDNMCAAPLPITKEQISGVAECAMRHVQKYKKVVH
LIERYAKHYAGARYRSAIICVIDSLCTKAHRAHKEKDVFIPRFRLRLLDT
VQGLTALEGRSEKKLMDRIFLEWRKRGWFDVPSLAVLAEGGGGGKSRGAS
SATSGSSSSPSRHSNPSDANSSGFTPPLPPPPPPPPPSGDAWHQPQLQPQ
QHREEDNGSSSGLRSPPPSPGPDSRPSPPPPPPSLPSPIPMNLPLDVPGR
STAVAALDPRKRLAAAPAAAPAAPASTSPSRAGTAAAVATEAEAPLDPRK
RIKSSPAAAALTTTTTKRTTGAPAALDLPPPVSSSSFGNGGRGRLLLAGD
REEDEEEEDEELNLEGVGMGQAPPPSSSSSKHPSSSSRPPSRPSTLPSFS
SSSSSSFTAIAIPTPSPSLLASLQANPPSYSCSTTADSCRTKVHTMLNKF
LAGFQGKEGGKIPAWPQTFLSSLPSSSSSRFPPLSASPYFPVVPGGEGGS
GGAGEELPSVMSTVPGLHLAHRRVSLDDGAGAGKAGREGGKEGTKGVKVE
AVPVVARRWGRASAAPS*

mRNA from alignment at chr8:1094911..1097037+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G03890.1 ID=NO08G03890.1|Name=NO08G03890.1|organism=Nannochloropsis oceanica|type=mRNA|length=2127bp|location=Sequence derived from alignment at chr8:1094911..1097037+ (Nannochloropsis oceanica)
AACAGCTTTGAGGACAGCTAGTATCATCTGGATCGCCTGGTCGGGCCGCT
TACTTCCCGGTTCCTGTTAGAATCCGCCTTGTAACGCGCCATCCTTTCCG
GCCATCCTCCCCATCATCACCCTATTGCTCCCCCAGCCCCTCCTTCTTTA
GCAGAATCATAACATCTCTATTACGCAGCTGTCATGAACCAAAACGATGA
TAAGGAACTGCTGGACCTCAAAACTCTCCTAGACAACATGTGCGCCGCTC
CCCTGCCCATCACAAAGGAGCAAATCTCAGGCGTGGCCGAATGCGCCATG
CGACACGTCCAGAAGTACAAGAAAGTGGTGCATCTCATCGAGCGATATGC
CAAGCACTACGCGGGTGCGCGGTACCGTTCTGCTATTATCTGTGTGATTG
ATTCCCTGTGCACCAAAGCCCATCGCGCCCACAAGGAGAAGGACGTTTTC
ATCCCTCGTTTTCGTCTCCGGCTTCTAGATACGGTGCAGGGCCTAACGGC
GTTGGAAGGGCGGTCAGAAAAGAAATTGATGGATCGGATCTTTCTAGAGT
GGCGGAAACGTGGTTGGTTTGACGTTCCAAGTTTGGCTGTCCTGGCCGAG
GGTGGAGGAGGGGGAAAGTCCCGCGGCGCCAGCAGTGCCACCAGCGGCAG
CTCCAGCAGCCCTAGCAGGCATAGCAACCCCTCCGATGCAAACTCCTCGG
GCTTCACGCCACCGTTGCCTCCCCCTCCACCACCTCCTCCTCCATCTGGA
GATGCATGGCACCAGCCGCAACTACAGCCGCAACAACACCGTGAAGAGGA
CAATGGCAGCAGCTCAGGCCTACGTTCCCCTCCTCCCTCCCCGGGCCCCG
ACAGCAGACCTTCTCCCCCCCCTCCTCCTCCCTCCCTCCCTTCCCCTATC
CCCATGAATTTACCCCTCGATGTGCCCGGCCGTTCGACAGCAGTAGCAGC
TCTTGATCCCCGTAAACGTCTTGCTGCTGCTCCTGCTGCTGCTCCTGCTG
CTCCTGCTTCCACCTCCCCCTCTCGTGCAGGAACAGCAGCAGCAGTAGCA
ACAGAAGCAGAAGCTCCGCTTGATCCTCGCAAACGCATCAAGTCCTCTCC
AGCAGCAGCTGCACTAACAACAACAACAACAAAAAGAACAACGGGAGCAC
CGGCTGCACTGGACCTCCCTCCCCCCGTATCTTCTTCGTCTTTCGGTAAT
GGGGGGAGGGGGAGGTTACTCCTGGCAGGCGACAGGGAGGAGGATGAGGA
GGAGGAAGACGAAGAACTCAATTTAGAGGGAGTAGGTATGGGTCAAGCAC
CTCCTCCCTCGTCCTCCTCCTCCAAACACCCCTCCTCTTCATCGCGCCCC
CCCTCACGACCTTCTACTCTTCCCTCCTTCTCCTCCTCCTCCTCCTCCTC
CTTCACCGCCATCGCCATCCCAACCCCATCCCCATCTCTCCTCGCCTCCC
TCCAAGCAAACCCTCCCTCCTACTCCTGCAGCACCACCGCCGATAGCTGT
CGTACGAAAGTGCACACGATGCTCAACAAATTTCTCGCCGGCTTCCAAGG
GAAGGAAGGAGGGAAAATACCTGCCTGGCCCCAGACCTTCCTTTCCTCCC
TCCCCTCCTCGTCCTCCTCGCGTTTCCCCCCCTTGTCCGCTTCGCCTTAC
TTCCCCGTCGTCCCGGGAGGGGAGGGAGGGAGTGGGGGAGCGGGGGAAGA
GCTGCCATCCGTAATGAGTACTGTTCCCGGACTGCACCTGGCGCATCGCA
GGGTCTCCCTCGATGATGGAGCGGGAGCAGGGAAGGCAGGGAGGGAGGGA
GGGAAAGAAGGAACAAAGGGTGTGAAAGTAGAAGCGGTGCCCGTAGTGGC
TCGGCGGTGGGGGAGGGCATCAGCAGCGCCGTCGTAGGGAGGGAGAAAAT
AGAAAAAGGGAGGGGAGATGAGGGAGATGGGATGAAATAGAGCGACTGGG
AATGGGGAAGGGGGGGAGATAGAAGACACGTAAGGTTGAAGACAAAAGAA
AAGGAAAGGAAAGAAAAACACATACAAACCTAAAAACTTGTGTATGAATG
AGGATGTATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTATGT

Coding sequence (CDS) from alignment at chr8:1094911..1097037+

>NO08G03890.1 ID=NO08G03890.1|Name=NO08G03890.1|organism=Nannochloropsis oceanica|type=CDS|length=1704bp|location=Sequence derived from alignment at chr8:1094911..1097037+ (Nannochloropsis oceanica)
ATGAACCAAAACGATGATAAGGAACTGCTGGACCTCAAAACTCTCCTAGA
CAACATGTGCGCCGCTCCCCTGCCCATCACAAAGGAGCAAATCTCAGGCG
TGGCCGAATGCGCCATGCGACACGTCCAGAAGTACAAGAAAGTGGTGCAT
CTCATCGAGCGATATGCCAAGCACTACGCGGGTGCGCGGTACCGTTCTGC
TATTATCTGTGTGATTGATTCCCTGTGCACCAAAGCCCATCGCGCCCACA
AGGAGAAGGACGTTTTCATCCCTCGTTTTCGTCTCCGGCTTCTAGATACG
GTGCAGGGCCTAACGGCGTTGGAAGGGCGGTCAGAAAAGAAATTGATGGA
TCGGATCTTTCTAGAGTGGCGGAAACGTGGTTGGTTTGACGTTCCAAGTT
TGGCTGTCCTGGCCGAGGGTGGAGGAGGGGGAAAGTCCCGCGGCGCCAGC
AGTGCCACCAGCGGCAGCTCCAGCAGCCCTAGCAGGCATAGCAACCCCTC
CGATGCAAACTCCTCGGGCTTCACGCCACCGTTGCCTCCCCCTCCACCAC
CTCCTCCTCCATCTGGAGATGCATGGCACCAGCCGCAACTACAGCCGCAA
CAACACCGTGAAGAGGACAATGGCAGCAGCTCAGGCCTACGTTCCCCTCC
TCCCTCCCCGGGCCCCGACAGCAGACCTTCTCCCCCCCCTCCTCCTCCCT
CCCTCCCTTCCCCTATCCCCATGAATTTACCCCTCGATGTGCCCGGCCGT
TCGACAGCAGTAGCAGCTCTTGATCCCCGTAAACGTCTTGCTGCTGCTCC
TGCTGCTGCTCCTGCTGCTCCTGCTTCCACCTCCCCCTCTCGTGCAGGAA
CAGCAGCAGCAGTAGCAACAGAAGCAGAAGCTCCGCTTGATCCTCGCAAA
CGCATCAAGTCCTCTCCAGCAGCAGCTGCACTAACAACAACAACAACAAA
AAGAACAACGGGAGCACCGGCTGCACTGGACCTCCCTCCCCCCGTATCTT
CTTCGTCTTTCGGTAATGGGGGGAGGGGGAGGTTACTCCTGGCAGGCGAC
AGGGAGGAGGATGAGGAGGAGGAAGACGAAGAACTCAATTTAGAGGGAGT
AGGTATGGGTCAAGCACCTCCTCCCTCGTCCTCCTCCTCCAAACACCCCT
CCTCTTCATCGCGCCCCCCCTCACGACCTTCTACTCTTCCCTCCTTCTCC
TCCTCCTCCTCCTCCTCCTTCACCGCCATCGCCATCCCAACCCCATCCCC
ATCTCTCCTCGCCTCCCTCCAAGCAAACCCTCCCTCCTACTCCTGCAGCA
CCACCGCCGATAGCTGTCGTACGAAAGTGCACACGATGCTCAACAAATTT
CTCGCCGGCTTCCAAGGGAAGGAAGGAGGGAAAATACCTGCCTGGCCCCA
GACCTTCCTTTCCTCCCTCCCCTCCTCGTCCTCCTCGCGTTTCCCCCCCT
TGTCCGCTTCGCCTTACTTCCCCGTCGTCCCGGGAGGGGAGGGAGGGAGT
GGGGGAGCGGGGGAAGAGCTGCCATCCGTAATGAGTACTGTTCCCGGACT
GCACCTGGCGCATCGCAGGGTCTCCCTCGATGATGGAGCGGGAGCAGGGA
AGGCAGGGAGGGAGGGAGGGAAAGAAGGAACAAAGGGTGTGAAAGTAGAA
GCGGTGCCCGTAGTGGCTCGGCGGTGGGGGAGGGCATCAGCAGCGCCGTC
GTAG

Synonyms

Publications