NO08G03880.1, NO08G03880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03880.1
Unique NameNO08G03880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length918
Alignment locationchr8:1093731..1094648 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1093731..1094648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03880.1 vs.
Match: EWM26850.1 (urease accessory protein [Nannochloropsis gaditana])

HSP 1 Score: 326.6 bits (836), Expect = 8.100e-86
Identity = 181/301 (60.13%), Postives = 222/301 (73.75%), Query Frame = 0 
Query:   15 VSSSPPSPALAWCVWQMMDSNLPTGGFAHSYGLEAAMQMGQFELKGGASGDKEARVAGLLVFARQTVQQQAMLLLPLVRAAYAAAEAMEVPGRPGSSPPSAQPLVMAWASLDRQCHALLTTEGGRRASVSQGQALLRLACDNFPTISPQNRRWLCHARDQVRGRPPAK----AAGGSEGRNGAVPPQLLPVKGHQAPLFGWLCRALGVDVITTSRMFCYLVLRDLMAAATRLGLVGPLQAVRLQMLMYQDAEAIVTRCLEEGAR------REERREPRQDNPLLDILQGAHEKLYSRLFIS 306
            + S  PS  ++W +WQ++DSNLPTGGFAHSYGLEAA+Q+  F+L+   S D+E RV GLL FARQT++QQA LLLP+V AA+ AA+      +   +  S   +V  WA+LD++CHAL+TTEGGRRAS +QG ALLRLACDN P++S Q+ +WL  ARD +RGR   +    AAG SE    +    +L  +GHQAP+FGWLC+ALGVD +T  RMFCYLVLRDLMAAATRLGLVGPL AVRLQM +Y DAEA+V R LE+ A       +E  R PRQ+NPLLDILQGAHEKLYSRLFIS
Sbjct:    1 MESYAPS-TVSWVIWQLLDSNLPTGGFAHSYGLEAALQLKHFDLQ---SVDEEMRVTGLLAFARQTMEQQASLLLPMVSAAHHAAKDATALLKCTDAGSSVS-MVSRWATLDKECHALITTEGGRRASTAQGLALLRLACDNIPSLSSQHCQWLRTARDLIRGRVGYRYRDDAAGESESLGVSHDMSILSARGHQAPVFGWLCQALGVDAVTCFRMFCYLVLRDLMAAATRLGLVGPLAAVRLQMTLYGDAEAVVGRFLEQEASERATGGKEGGRGPRQENPLLDILQGAHEKLYSRLFIS 296
The following BLAST results are available for this feature:
BLAST of NO08G03880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26850.18.100e-8660.13urease accessory protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03880NO08G03880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03880.1NO08G03880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03880.1.cds1NO08G03880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03880.1 ID=NO08G03880.1|Name=NO08G03880.1|organism=Nannochloropsis oceanica|type=mRNA|length=918bp
ATGGACGAAGTCCTGCCGCTGCCGCCGGCCTCCCTAAACCAAGTTTCCTC
CTCCCCTCCCTCGCCCGCCCTGGCCTGGTGCGTCTGGCAAATGATGGATT
CTAACTTGCCCACCGGCGGCTTTGCACATTCCTACGGCCTCGAGGCCGCG
ATGCAGATGGGGCAGTTCGAACTCAAGGGGGGCGCGAGCGGGGACAAGGA
GGCCCGCGTTGCGGGGTTGCTTGTCTTTGCCCGCCAGACCGTGCAGCAAC
AGGCCATGCTCCTCTTGCCCTTGGTTCGGGCGGCGTACGCCGCCGCTGAA
GCCATGGAAGTACCAGGCAGACCTGGATCTTCTCCTCCATCAGCACAACC
TCTTGTCATGGCATGGGCAAGTCTAGACCGTCAGTGCCACGCCCTGCTAA
CCACCGAGGGTGGGCGTCGTGCTTCAGTCTCGCAGGGCCAAGCATTGCTT
CGTCTAGCCTGCGATAATTTCCCCACTATTTCTCCCCAAAATCGACGATG
GCTTTGTCATGCAAGGGACCAAGTGCGAGGACGACCACCAGCAAAAGCAG
CGGGGGGAAGCGAAGGAAGAAATGGAGCAGTACCACCACAACTTCTCCCC
GTTAAGGGTCACCAGGCCCCTCTCTTTGGCTGGCTTTGTCGAGCCTTGGG
GGTGGACGTAATCACAACGTCCCGCATGTTTTGTTACTTGGTGCTGCGTG
ATTTGATGGCCGCAGCGACGAGGCTTGGGCTTGTCGGACCTTTGCAGGCA
GTGCGGTTGCAAATGTTAATGTACCAGGACGCCGAGGCCATTGTGACGCG
GTGCCTGGAGGAGGGAGCAAGAAGAGAGGAAAGACGGGAACCACGACAAG
ATAATCCTTTGCTGGATATCTTGCAGGGTGCGCACGAGAAATTGTATTCG
CGATTGTTCATAAGTTGA
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protein sequence of NO08G03880.1

>NO08G03880.1-protein ID=NO08G03880.1-protein|Name=NO08G03880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MDEVLPLPPASLNQVSSSPPSPALAWCVWQMMDSNLPTGGFAHSYGLEAA
MQMGQFELKGGASGDKEARVAGLLVFARQTVQQQAMLLLPLVRAAYAAAE
AMEVPGRPGSSPPSAQPLVMAWASLDRQCHALLTTEGGRRASVSQGQALL
RLACDNFPTISPQNRRWLCHARDQVRGRPPAKAAGGSEGRNGAVPPQLLP
VKGHQAPLFGWLCRALGVDVITTSRMFCYLVLRDLMAAATRLGLVGPLQA
VRLQMLMYQDAEAIVTRCLEEGARREERREPRQDNPLLDILQGAHEKLYS
RLFIS*
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mRNA from alignment at chr8:1093731..1094648-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03880.1 ID=NO08G03880.1|Name=NO08G03880.1|organism=Nannochloropsis oceanica|type=mRNA|length=918bp|location=Sequence derived from alignment at chr8:1093731..1094648- (Nannochloropsis oceanica)
ATGGACGAAGTCCTGCCGCTGCCGCCGGCCTCCCTAAACCAAGTTTCCTC
CTCCCCTCCCTCGCCCGCCCTGGCCTGGTGCGTCTGGCAAATGATGGATT
CTAACTTGCCCACCGGCGGCTTTGCACATTCCTACGGCCTCGAGGCCGCG
ATGCAGATGGGGCAGTTCGAACTCAAGGGGGGCGCGAGCGGGGACAAGGA
GGCCCGCGTTGCGGGGTTGCTTGTCTTTGCCCGCCAGACCGTGCAGCAAC
AGGCCATGCTCCTCTTGCCCTTGGTTCGGGCGGCGTACGCCGCCGCTGAA
GCCATGGAAGTACCAGGCAGACCTGGATCTTCTCCTCCATCAGCACAACC
TCTTGTCATGGCATGGGCAAGTCTAGACCGTCAGTGCCACGCCCTGCTAA
CCACCGAGGGTGGGCGTCGTGCTTCAGTCTCGCAGGGCCAAGCATTGCTT
CGTCTAGCCTGCGATAATTTCCCCACTATTTCTCCCCAAAATCGACGATG
GCTTTGTCATGCAAGGGACCAAGTGCGAGGACGACCACCAGCAAAAGCAG
CGGGGGGAAGCGAAGGAAGAAATGGAGCAGTACCACCACAACTTCTCCCC
GTTAAGGGTCACCAGGCCCCTCTCTTTGGCTGGCTTTGTCGAGCCTTGGG
GGTGGACGTAATCACAACGTCCCGCATGTTTTGTTACTTGGTGCTGCGTG
ATTTGATGGCCGCAGCGACGAGGCTTGGGCTTGTCGGACCTTTGCAGGCA
GTGCGGTTGCAAATGTTAATGTACCAGGACGCCGAGGCCATTGTGACGCG
GTGCCTGGAGGAGGGAGCAAGAAGAGAGGAAAGACGGGAACCACGACAAG
ATAATCCTTTGCTGGATATCTTGCAGGGTGCGCACGAGAAATTGTATTCG
CGATTGTTCATAAGTTGA
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Coding sequence (CDS) from alignment at chr8:1093731..1094648-

>NO08G03880.1 ID=NO08G03880.1|Name=NO08G03880.1|organism=Nannochloropsis oceanica|type=CDS|length=918bp|location=Sequence derived from alignment at chr8:1093731..1094648- (Nannochloropsis oceanica)
ATGGACGAAGTCCTGCCGCTGCCGCCGGCCTCCCTAAACCAAGTTTCCTC
CTCCCCTCCCTCGCCCGCCCTGGCCTGGTGCGTCTGGCAAATGATGGATT
CTAACTTGCCCACCGGCGGCTTTGCACATTCCTACGGCCTCGAGGCCGCG
ATGCAGATGGGGCAGTTCGAACTCAAGGGGGGCGCGAGCGGGGACAAGGA
GGCCCGCGTTGCGGGGTTGCTTGTCTTTGCCCGCCAGACCGTGCAGCAAC
AGGCCATGCTCCTCTTGCCCTTGGTTCGGGCGGCGTACGCCGCCGCTGAA
GCCATGGAAGTACCAGGCAGACCTGGATCTTCTCCTCCATCAGCACAACC
TCTTGTCATGGCATGGGCAAGTCTAGACCGTCAGTGCCACGCCCTGCTAA
CCACCGAGGGTGGGCGTCGTGCTTCAGTCTCGCAGGGCCAAGCATTGCTT
CGTCTAGCCTGCGATAATTTCCCCACTATTTCTCCCCAAAATCGACGATG
GCTTTGTCATGCAAGGGACCAAGTGCGAGGACGACCACCAGCAAAAGCAG
CGGGGGGAAGCGAAGGAAGAAATGGAGCAGTACCACCACAACTTCTCCCC
GTTAAGGGTCACCAGGCCCCTCTCTTTGGCTGGCTTTGTCGAGCCTTGGG
GGTGGACGTAATCACAACGTCCCGCATGTTTTGTTACTTGGTGCTGCGTG
ATTTGATGGCCGCAGCGACGAGGCTTGGGCTTGTCGGACCTTTGCAGGCA
GTGCGGTTGCAAATGTTAATGTACCAGGACGCCGAGGCCATTGTGACGCG
GTGCCTGGAGGAGGGAGCAAGAAGAGAGGAAAGACGGGAACCACGACAAG
ATAATCCTTTGCTGGATATCTTGCAGGGTGCGCACGAGAAATTGTATTCG
CGATTGTTCATAAGTTGA
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Synonyms
Publications