NO08G03850.3, NO08G03850.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03850.3
Unique NameNO08G03850.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1858
Alignment locationchr8:1087387..1089521 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1087387..1089521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO08G03850.3 vs.
Match: EWM26853.1 (lysophospholipase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 309.3 bits (791), Expect = 1.000e-80
Identity = 154/212 (72.64%), Postives = 169/212 (79.72%), Query Frame = 0 
Query:    8 TTYENSPAWRKQMIFLPAELHLTA-ETMPSESTWTYKGHAVHVDSCGDSASSPVTLIMLHGVGTNARQQSLLVGAPLARLHNFHSLALDCPGYGATKVAPKAKVIYSDWVDLVSDFVDDQA-----ASNGGKPIVLYGLSAGGMLAYQVAARNKNVKGVVGMTFLDQRVQEVRDTTAHDLAGSRVGVPLAAMVKNTLLGGTKLPMALTSKVR 214
            T+Y N PAWR QM FLP  + LT  E MP E TW YKGHAVHVDSCG    SPVTL++LHGVGTNARQ SLLVG PLAR + FHSLALDCPGYG T+VAPK+KV YSDWVDLV  FVD Q         G +PIVL+GLSAGGMLAYQVAARN NVKGV+GMTFLDQRVQEVRDTTAHDL GSRVGVPLA +++ T LGG +LPM LTSK+R
Sbjct:    3 TSYANLPAWRNQMTFLPGNMQLTKPEDMPKEKTWRYKGHAVHVDSCGTPVGSPVTLVLLHGVGTNARQMSLLVGLPLARKYGFHSLALDCPGYGVTQVAPKSKVTYSDWVDLVDAFVDAQTRRQLNEGRGTRPIVLFGLSAGGMLAYQVAARNANVKGVIGMTFLDQRVQEVRDTTAHDLVGSRVGVPLAGVLRGTPLGGIRLPMPLTSKMR 214
The following BLAST results are available for this feature:
BLAST of NO08G03850.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26853.11.000e-8072.64lysophospholipase-like protein [Nannochloropsis ga... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03850NO08G03850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03850.3NO08G03850.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03850.3.cds1NO08G03850.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03850.3.cds2NO08G03850.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03850.3.cds3NO08G03850.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03850.3 ID=NO08G03850.3|Name=NO08G03850.3|organism=Nannochloropsis oceanica|type=mRNA|length=1858bp
CGCTGCATCTCTGGCTTGTGCTGTATTTTGTATGTATGGGAGCAGGTTAG
AATTTGCAGTGTTGCAGAGGGGTAAGTGGTGGGGCAGGCGGGCCATTGTG
GTGGATCCCTTCCGATTGAGATACTACAGGCGGCCCAGAAGCCTGGGAAA
GCCCATCACCACCCCTACTCCTTCCAAGCACCCATCAGAACGTGTTATGG
ATAGGAATGCGAAGGGCGGAGCAGATGCATGAGGTGAAGATGTACTAAGC
CTCACATCGGCATCGGCACACGCTTGATGTAATTCCCGGTGTCGAAGTTT
ATGCCGCGAAAGCAAAGAACTATTGGAACTAATCTCCATCTAACTTTGAG
CTACACATGTTACACATCTCTCCGTCTAGACGACTGCAGGAACCATGGCC
GCGACGACAGCCACGACGACTTATGAAAACTCTCCCGCCTGGCGCAAGCA
AATGATTTTTTTGCCCGCTGAACTCCATCTCACCGCCGAGACAATGCCCA
GCGAGTCGACCTGGACATACAAGGGCCATGCCGTACACGTAGACAGCTGC
GGGGATTCTGCAAGTTCGCCCGTCACGCTGATTATGCTTCACGGCGTCGG
TACCAACGCCCGACAACAGTCCTTGCTTGTTGGGGCGCCCCTCGCGCGTC
TCCATAATTTCCATTCCCTTGCCTTGGATTGTCCGGGGTATGGCGCGACA
AAAGTAGCCCCGAAAGCCAAGGTCATATACAGCGACTGGGTGGATTTAGT
AAGTGACTTTGTGGATGACCAAGCCGCGAGTAATGGAGGAAAGCCCATCG
TGTTGTACGGGTTGAGCGCTGGAGGCATGTTAGCGTATCAAGTGGCAGCC
CGGAACAAGAACGTGAAAGGCGTGGTAGGGATGACGTTCTTGGACCAGCG
GGTGCAGGAGGTCCGGGATACTACGGCGCATGACCTGGCCGGCTCCCGTG
TGGGAGTGCCTTTAGCTGCTATGGTTAAAAATACCTTGTTGGGAGGAACG
AAGCTTCCCATGGCTTTGACGAGCAAGGTAAGGAGGGGAAGGAGGGAGGA
GGGCACGAAGGAGGGAGGAGTGGACGACACGAAACAGTCTTGTCGTTTTC
TCATGTAATGTGATCCCTGAGAACCCGTCCGAACGCATCGTGTCCCACTT
CAAATCACATGTCTACTATGATTATTTTACTCGCTCCCTTCTTCCCTCCC
TCCCTTCTTCCCTCCTTCCCTTCCTAGATGTGGGCCCTCGTTAATAACAA
GCCCGCCCTCAAGGCCTTTCTCTCCGACCGGTCCTCCGCAGGGAATTGGG
TCGCCATCCGTTTCCTCGCTGATTATATGAGCTACGCTCCTGCGGTGGAG
CCAGAGCTGTTTGACACCTGCCCGATTTTGCTGACGCAGCCGGCGGAGGA
TAAGTGGACGCCACTGCGGTTGAGGTAGGAATGGGATGGAAGGAGGGAAG
AGAGTGATGGGGCTTGACGCCATGTGTTTCTTGGTAGAAATTTCAAACAC
AGCGACGACCTTAATCACGAATGACTGGCTACTTATCTATGACCCTCTTT
CTCTCACCTAGTCAATATCCTTATCTCCTTCCTTACCTGCCCTCCATCCC
ACTCTCCTAGCGAGCTTTTTCTCAAGCGCATCACCAAGGTACCCGTCCAA
ACGGTGATGCTCGACGGGGCAGGACACTACCCATTGGAGCAACCAGGCAT
CGACCAGTTGCACGCAGCCATTGCGGCATTTGTCAAGGACACGGTGCTGG
CGGGGAAGTAAATGGAGGCAGGATTGGAGGGGAGATTGGAAGCGAGGGGG
AGGAGGGGGGGAGATTTGGACAGTGCGAATGCTGAGCTGTAAGGATGAAG
CAAGGGTA
back to top

protein sequence of NO08G03850.3

>NO08G03850.3-protein ID=NO08G03850.3-protein|Name=NO08G03850.3|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MAATTATTTYENSPAWRKQMIFLPAELHLTAETMPSESTWTYKGHAVHVD
SCGDSASSPVTLIMLHGVGTNARQQSLLVGAPLARLHNFHSLALDCPGYG
ATKVAPKAKVIYSDWVDLVSDFVDDQAASNGGKPIVLYGLSAGGMLAYQV
AARNKNVKGVVGMTFLDQRVQEVRDTTAHDLAGSRVGVPLAAMVKNTLLG
GTKLPMALTSKVRRGRREEGTKEGGVDDTKQSCRFLM*
back to top

mRNA from alignment at chr8:1087387..1089521-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03850.3 ID=NO08G03850.3|Name=NO08G03850.3|organism=Nannochloropsis oceanica|type=mRNA|length=2135bp|location=Sequence derived from alignment at chr8:1087387..1089521- (Nannochloropsis oceanica)
CGCTGCATCTCTGGCTTGTGCTGTATTTTGTATGTATGGGAGCAGGTTAG
AATTTGCAGTGTTGCAGAGGGGTAAGTGGTGGGGCAGGCGGGCCATTGTG
GTGGATCCCTTCCGATTGAGATACTACAGGCGGCCCAGAAGCCTGGGAAA
GCCCATCACCACCCCTACTCCTTCCAAGCACCCATCAGAACGTGTTATGG
ATAGGAATGCGAAGGGCGGAGCAGATGCATGAGGTGAAGATGTACTAAGC
CTCACATCGGCATCGGCACACGCTTGATGTAATTCCCGGTGTCGAAGTTT
ATGCCGCGAAAGCAAAGAACTATTGGAACTAATCTCCATCTAACTTTGAG
CTACACATGTTACACATCTCTCCGTCTAGACGACTGCAGGAACCATGGCC
GCGACGACAGCCACGACGACTTATGAAAACTCTCCCGCCTGGCGCAAGCA
AATGATTTTTTTGCCCGCTGAACTCCATCTCACCGCCGAGACAATGCCCA
GCGAGTCGACCTGGACATACAAGGGCCATGCCGTACACGTAGACAGCTGC
GGGGATTCTGCAAGTTCGCCCGTCACGCTGATTATGCTTCACGGTATGTA
TATTTGGATGAGGAGCTCTGGAAAGATTTTGACAGCTATGGTGCCGGCAT
ATATTTGTTTGCCGTGTCGGCCTCCCTTGACTTGTGGACGCGTCGTACGC
GTCCTCTCTGCCACCATACCAATCGTTTCCTTGCCTATACCCTCCCTTTT
TTGTACAGGCGTCGGTACCAACGCCCGACAACAGTCCTTGCTTGTTGGGG
CGCCCCTCGCGCGTCTCCATAATTTCCATTCCCTTGCCTTGGATTGTCCG
GGGTATGGCGCGACAAAAGTAGCCCCGAAAGCCAAGGTCATATACAGCGA
CTGGGTGGATTTAGTAAGTGACTTTGTGGATGACCAAGCCGCGAGTAATG
GAGGAAAGCCCATCGTGTTGTACGGGTTGAGCGCTGGAGGCATGTTAGCG
TATCAAGTGGCAGCCCGGAACAAGAACGTGAAAGGCGTGGTAGGGATGAC
GTTCTTGGACCAGCGGGTGCAGGAGGTAAGTTGGAAGAAAAAGAGGGGGC
GAGGGAGGGAGAGCATCATCCATGCTGTCCAATTGCTCAACCGCCGCCCT
TTCTCTTTCTCTCTCCCTCCCTCCCTTCTTCCCGTAGGTCCGGGATACTA
CGGCGCATGACCTGGCCGGCTCCCGTGTGGGAGTGCCTTTAGCTGCTATG
GTTAAAAATACCTTGTTGGGAGGAACGAAGCTTCCCATGGCTTTGACGAG
CAAGGTAAGGAGGGGAAGGAGGGAGGAGGGCACGAAGGAGGGAGGAGTGG
ACGACACGAAACAGTCTTGTCGTTTTCTCATGTAATGTGATCCCTGAGAA
CCCGTCCGAACGCATCGTGTCCCACTTCAAATCACATGTCTACTATGATT
ATTTTACTCGCTCCCTTCTTCCCTCCCTCCCTTCTTCCCTCCTTCCCTTC
CTAGATGTGGGCCCTCGTTAATAACAAGCCCGCCCTCAAGGCCTTTCTCT
CCGACCGGTCCTCCGCAGGGAATTGGGTCGCCATCCGTTTCCTCGCTGAT
TATATGAGCTACGCTCCTGCGGTGGAGCCAGAGCTGTTTGACACCTGCCC
GATTTTGCTGACGCAGCCGGCGGAGGATAAGTGGACGCCACTGCGGTTGA
GGTAGGAATGGGATGGAAGGAGGGAAGAGAGTGATGGGGCTTGACGCCAT
GTGTTTCTTGGTAGAAATTTCAAACACAGCGACGACCTTAATCACGAATG
ACTGGCTACTTATCTATGACCCTCTTTCTCTCACCTAGTCAATATCCTTA
TCTCCTTCCTTACCTGCCCTCCATCCCACTCTCCTAGCGAGCTTTTTCTC
AAGCGCATCACCAAGGTACCCGTCCAAACGGTGATGCTCGACGGGGCAGG
ACACTACCCATTGGAGCAACCAGGCATCGACCAGTTGCACGCAGCCATTG
CGGCATTTGTCAAGGACACGGTGCTGGCGGGGAAGTAAATGGAGGCAGGA
TTGGAGGGGAGATTGGAAGCGAGGGGGAGGAGGGGGGGAGATTTGGACAG
TGCGAATGCTGAGCTGTAAGGATGAAGCAAGGGTA
back to top

Coding sequence (CDS) from alignment at chr8:1087387..1089521-

>NO08G03850.3 ID=NO08G03850.3|Name=NO08G03850.3|organism=Nannochloropsis oceanica|type=CDS|length=714bp|location=Sequence derived from alignment at chr8:1087387..1089521- (Nannochloropsis oceanica)
ATGGCCGCGACGACAGCCACGACGACTTATGAAAACTCTCCCGCCTGGCG
CAAGCAAATGATTTTTTTGCCCGCTGAACTCCATCTCACCGCCGAGACAA
TGCCCAGCGAGTCGACCTGGACATACAAGGGCCATGCCGTACACGTAGAC
AGCTGCGGGGATTCTGCAAGTTCGCCCGTCACGCTGATTATGCTTCACGG
CGTCGGTACCAACGCCCGACAACAGTCCTTGCTTGTTGGGGCGCCCCTCG
CGCGTCTCCATAATTTCCATTCCCTTGCCTTGGATTGTCCGGGGTATGGC
GCGACAAAAGTAGCCCCGAAAGCCAAGGTCATATACAGCGACTGGGTGGA
TTTAGTAAGTGACTTTGTGGATGACCAAGCCGCGAGTAATGGAGGAAAGC
CCATCGTGTTGTACGGGTTGAGCGCTGGAGGCATGTTAGCGTATCAAGTG
GCAGCCCGGAACAAGAACGTGAAAGGCGTGGTAGGGATGACGTTCTTGGA
CCAGCGGGTGCAGGAGGTCCGGGATACTACGGCGCATGACCTGGCCGGCT
CCCGTGTGGGAGTGCCTTTAGCTGCTATGGTTAAAAATACCTTGTTGGGA
GGAACGAAGCTTCCCATGGCTTTGACGAGCAAGGTAAGGAGGGGAAGGAG
GGAGGAGGGCACGAAGGAGGGAGGAGTGGACGACACGAAACAGTCTTGTC
GTTTTCTCATGTAA
back to top
Synonyms
Publications