NO08G03830.1, NO08G03830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03830.1
Unique NameNO08G03830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1611
Alignment locationchr8:1082585..1084909 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1082585..1084909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03830.1 vs.
Match: EWM26865.1 (saccharopine dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 567.0 bits (1460), Expect = 4.800e-158
Identity = 278/409 (67.97%), Postives = 337/409 (82.40%), Query Frame = 0 
Query:    1 MATREFDVVIFGATGFTGQLVAEYYLRTYGAPSSSFNWTIAGRNQKKLQEIKKDLGINKNLPEAKDIKTLVANSNDSASLEAIAKNTKVVVTTVGPYMKYGSKLVAACAAKGTHYADLTGEVPWIKDMIAANEEKAKASGARILHCCGFDSVPSDLGTHVMYNALVKRGLTPTEIKFIVGPSKGGVSGGTVHSLAGVLQSGRLRDMGNPYLLLSGGKKGGRGGGVTVKEPMGVGWDRDVQRWNAPFVMAGINTRVVVRSSYLMDRLPFEYTETMSFPKGVGGFLSACALTLGLALVVTCLLIPPIRWLVLKMLPPGSGPGEEMRKTGFALIYVVGKGVDKAGKEVVLKGSVRIAGDPGYQETAKMLAETGMALAKDEVDAAPGFLTPASALGDKLVTRLKKRDLVVEVE 410
            MA+R++D+V+FGATGFTG+LV EYYLRTYG PS SF W IAGRNQ KL+++ ++L  +K +PE+K ++TL+ +S DS  L+A+ K TKVVVTTVGPY KYGSKLVAACAA GTHYADLTGEVPWI  MIA++E  A+ASGARILHCCGFDS PSDLG HV+YNA+ KRGLTPTEIKF++G S+GGVSGGTVHSLA  + S  + +M NPY+LL   KK    G VTVK+  GV WD+DV+RWNAPF+MAGINTRVV RSSYLMDR+PF Y ET SFPKG+ G L AC LT+ + + +  + +PPIRW+VLK++PPGSGP E  RK G+ALIY+VGKG++K GKE V+KGSVRI+GDPGYQETAKMLAETGMALAKD++    GF TPASALGD LV RLK+R+L++EVE
Sbjct:    1 MASRKYDLVVFGATGFTGRLVVEYYLRTYGPPSPSFQWAIAGRNQDKLRKVIQELETHKGVPESKYLETLIGSSEDSVFLDALTKQTKVVVTTVGPYGKYGSKLVAACAANGTHYADLTGEVPWIAKMIASHEITAQASGARILHCCGFDSEPSDLGAHVLYNAMQKRGLTPTEIKFVLGSSQGGVSGGTVHSLADAMTS-PVEEMTNPYILLPDKKK----GSVTVKQTRGVWWDQDVRRWNAPFIMAGINTRVVARSSYLMDRVPFTYLETHSFPKGLWGCLQACMLTVAVGVAMVSMAVPPIRWIVLKVIPPGSGPSENARKKGYALIYLVGKGLNKEGKEEVVKGSVRISGDPGYQETAKMLAETGMALAKDKLSVQGGFHTPASALGDTLVARLKRRNLIIEVE 404
The following BLAST results are available for this feature:
BLAST of NO08G03830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26865.14.800e-15867.97saccharopine dehydrogenase [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03830NO08G03830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03830.1NO08G03830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03830.1.cds1NO08G03830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03830.1.cds2NO08G03830.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03830.1.cds3NO08G03830.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03830.1.cds4NO08G03830.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03830.1 ID=NO08G03830.1|Name=NO08G03830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1611bp
CAACATAGCCACAGCATTTATCAGGAATGGCAACTCGCGAATTCGACGTG
GTCATCTTTGGAGCCACAGGATTCACAGGCCAACTTGTGGCCGAATATTA
CCTACGGACATATGGCGCCCCCTCCTCCTCTTTCAACTGGACCATCGCCG
GTCGCAATCAAAAAAAGCTCCAAGAGATCAAAAAAGACTTGGGCATCAAC
AAAAACCTGCCGGAAGCCAAGGACATAAAGACTCTTGTTGCCAACTCCAA
CGACTCAGCCTCCCTAGAGGCGATCGCGAAGAATACGAAGGTGGTGGTCA
CGACGGTGGGGCCTTACATGAAATATGGGAGTAAGCTCGTGGCAGCATGT
GCGGCGAAGGGGACGCATTACGCAGATTTGACGGGAGAGGTGCCTTGGAT
CAAGGACATGATCGCCGCCAATGAAGAAAAGGCTAAAGCGTCCGGTGCGC
GGATTCTGCACTGCTGTGGTTTTGACTCGGTGCCGAGTGACCTGGGCACC
CACGTCATGTACAACGCCCTGGTGAAGAGGGGGCTGACCCCTACCGAGAT
CAAGTTTATCGTCGGGCCTTCTAAGGGAGGGGTGAGTGGCGGCACCGTTC
ACTCTCTCGCAGGCGTGCTCCAGAGCGGGCGATTGCGTGACATGGGCAAT
CCATACCTCCTCTTGTCAGGGGGGAAGAAGGGAGGGAGGGGGGGAGGAGT
GACGGTGAAGGAGCCGATGGGCGTCGGCTGGGACCGAGACGTCCAGAGGT
GGAATGCGCCGTTTGTGATGGCGGGGATTAACACACGGGTAGTGGTGCGC
TCGTCGTATTTGATGGACCGTCTGCCCTTTGAGTACACCGAGACCATGTC
CTTCCCCAAGGGGGTGGGAGGGTTCTTGTCCGCGTGTGCTCTGACCCTAG
GGCTTGCCCTGGTGGTGACTTGCCTGCTCATTCCTCCCATCCGGTGGTTG
GTGTTGAAGATGCTCCCGCCCGGGTCGGGGCCGGGGGAGGAGATGCGGAA
GACGGGCTTTGCATTGATTTATGTGGTGGGGAAGGGGGTGGATAAGGCGG
GGAAGGAGGTGGTGCTGAAGGGATCGGTTAGAATTGCAGGAGACCCGGGA
TATCAGGAAACCGCCAAGATGCTCGCTGAGACCGGTATGGCGCTAGCCAA
AGACGAAGTTGATGCTGCGCCTGGATTTTTGACGCCTGCCTCTGCCTTGG
GCGACAAATTGGTAACACGGCTCAAGAAAAGGGATCTGGTGGTGGAGGTG
GAGGGCGAGTGAAGCAAGGAGGAAGGGAAAGAGGGCACGCAAGGCAGGGA
CGAGAGTCTAGAGGGTGAGAACAGGTGATGAGGGATGCTGGAGGGAGAGA
AAGAATGAGGGGGTGTGGTGGGTGTTGAATTCGCACGAGGGCCAGAAGAA
GAGGGGGCGGTGATGGATGGTCACGGAGGAGAGGATCGACAGCACAAGCC
GGCTAGCAAAGACAGACGGGCGGCAAGAACAGATATATCAGGTCTACACG
GAGAGGGGGAAAGGAACAAGAAGAAGAGCAAGAAGACCAAGAAGAGCGAG
AAGAAGGAGAAGAAGGAGAAGAAGAAAAAGAAGAAAAAGAAGACTGTGAA
GAACAAGAAGG
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protein sequence of NO08G03830.1

>NO08G03830.1-protein ID=NO08G03830.1-protein|Name=NO08G03830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=412bp
MATREFDVVIFGATGFTGQLVAEYYLRTYGAPSSSFNWTIAGRNQKKLQE
IKKDLGINKNLPEAKDIKTLVANSNDSASLEAIAKNTKVVVTTVGPYMKY
GSKLVAACAAKGTHYADLTGEVPWIKDMIAANEEKAKASGARILHCCGFD
SVPSDLGTHVMYNALVKRGLTPTEIKFIVGPSKGGVSGGTVHSLAGVLQS
GRLRDMGNPYLLLSGGKKGGRGGGVTVKEPMGVGWDRDVQRWNAPFVMAG
INTRVVVRSSYLMDRLPFEYTETMSFPKGVGGFLSACALTLGLALVVTCL
LIPPIRWLVLKMLPPGSGPGEEMRKTGFALIYVVGKGVDKAGKEVVLKGS
VRIAGDPGYQETAKMLAETGMALAKDEVDAAPGFLTPASALGDKLVTRLK
KRDLVVEVEGE*
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mRNA from alignment at chr8:1082585..1084909+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03830.1 ID=NO08G03830.1|Name=NO08G03830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2325bp|location=Sequence derived from alignment at chr8:1082585..1084909+ (Nannochloropsis oceanica)
CAACATAGCCACAGCATTTATCAGGAATGGCAACTCGCGAATTCGACGTG
GTCATCTTTGGAGCCACAGGATTCACAGGTGTGTGTGGGGGTGCAGCGCA
GCGAAGGGCAGAGAGGGAGCGGTGATGGTAAAAGCCCTAGCGTGTTATCC
ATTGTTTCAGAGAGAGGAAGCATGAAAGGGCAGAAAATGAATCGGAGGAG
GAAATGGCTGACAGGTCATGTGATACTATAGAATGACTGAGCAAGGTGGT
GAAATTGAGGAGCTGGAAACGAAAACCAGCGTCACCCTCAATACGATCCT
TCCATTCCTTCCTTCCCTCCCCCCCGCCTCCCCTTCTGGCAGGCCAACTT
GTGGCCGAATATTACCTACGGACATATGGCGCCCCCTCCTCCTCTTTCAA
CTGGACCATCGCCGGTCGCAATCAAAAAAAGCTCCAAGAGATCAAAAAAG
ACTTGGGCATCAACAAAAACCTGCCGGAAGCCAAGGACATAAAGACTCTT
GTTGCCAACTCCAACGACTCAGCCTCCCTAGAGGCGATCGCGAAGAATAC
GAAGGTGGTGGTCACGACGGTGGGGCCTTACATGAAATATGGGAGTAAGC
TCGTGGCAGCATGTGCGGCGAAGGGGACGCATTACGCAGATTTGACGGGA
GAGGTGAGGGAGGGAGGGAGGAAGGGAGGGAGGGAGAGGCGGGTTTGTGA
ACCTCGCAGGACATGCCTTAGAATCTCCGGCGGTATATGTTCGTGTAATA
GGTTGTTATCAAATTGAATTTGTTTTAGCACAATGTATTGAGGGTAGGTG
TGAGGGGGAACAAAGGTGGGAAGTCGAAAATCACCCATTCCTCCCCCCTC
CTTTCCTCCCTCCCTCCTACCCTCCCTCCCTCCCTCCCTCCCTGCCTCCC
TGCCAGGTGCCTTGGATCAAGGACATGATCGCCGCCAATGAAGAAAAGGC
TAAAGCGTCCGGTGCGCGGATTCTGCACTGCTGTGGTTTTGACTCGGTGC
CGAGTGACCTGGGCACCCACGTCATGTACAACGCCCTGGTGAAGAGGGGG
CTGACCCCTACCGAGATCAAGTTTATCGTCGGGCCTTCTAAGGGAGGGGT
GAGTGGCGGCACCGTTCACTCTCTCGCAGGCGTGCTCCAGAGCGGGCGAT
TGCGTGACATGGGCAATCCATACCTCCTCTTGTCAGGGGGGAAGAAGGGA
GGGAGGGGGGGAGGAGTGACGGTGAAGGAGCCGATGGGCGTCGGCTGGGA
CCGAGACGTCCAGAGGTGGAATGCGCCGTTTGTGATGGCGGGGATTAACA
CACGGGTAGTGGTGCGCTCGTCGTATTTGATGGACCGTCTGCCCTTTGAG
TACACCGAGACCATGTCCTTCCCCAAGGGGGTGGGAGGGTTCTTGTCCGC
GTGTGCTCTGACCCTAGGGCTTGCCCTGGTGGTGACTTGCCTGCTCATTC
CTCCCATCCGGTGGTTGGTGTTGAAGATGCTCCCGCCCGGGTCGGGGCCG
GGGGAGGAGATGCGGAAGACGGGCTTTGCATTGATTTATGTGGTGGGGAA
GGGGGTGGATAAGGCGGGGAAGGAGGTGGTGCTGAAGGGATCGGTTAGAA
TTGCAGGAGACCCGGGATATCAGGTATGCTCTATGACTGGCTTTGGCCCT
CCCTCCCTTCCTCCCTCCCGCCATCCCTATCTCACTACCTTCCTTTCTTC
CTTTTCTCCCTTTTGCTTTCCTTCTTTTCCCTCCGTCTTGCTTTAAGTGG
ACTTTCTGACCTCTTATCCGCCTACCCCTCTCGCTCCCTTCCTCCCTCCC
TCTCTCCCCCCATCCCCAAGGAAACCGCCAAGATGCTCGCTGAGACCGGT
ATGGCGCTAGCCAAAGACGAAGTTGATGCTGCGCCTGGATTTTTGACGCC
TGCCTCTGCCTTGGGCGACAAATTGGTAACACGGCTCAAGAAAAGGGATC
TGGTGGTGGAGGTGGAGGGCGAGTGAAGCAAGGAGGAAGGGAAAGAGGGC
ACGCAAGGCAGGGACGAGAGTCTAGAGGGTGAGAACAGGTGATGAGGGAT
GCTGGAGGGAGAGAAAGAATGAGGGGGTGTGGTGGGTGTTGAATTCGCAC
GAGGGCCAGAAGAAGAGGGGGCGGTGATGGATGGTCACGGAGGAGAGGAT
CGACAGCACAAGCCGGCTAGCAAAGACAGACGGGCGGCAAGAACAGATAT
ATCAGGTCTACACGGAGAGGGGGAAAGGAACAAGAAGAAGAGCAAGAAGA
CCAAGAAGAGCGAGAAGAAGGAGAAGAAGGAGAAGAAGAAAAAGAAGAAA
AAGAAGACTGTGAAGAACAAGAAGG
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Coding sequence (CDS) from alignment at chr8:1082585..1084909+

>NO08G03830.1 ID=NO08G03830.1|Name=NO08G03830.1|organism=Nannochloropsis oceanica|type=CDS|length=1236bp|location=Sequence derived from alignment at chr8:1082585..1084909+ (Nannochloropsis oceanica)
ATGGCAACTCGCGAATTCGACGTGGTCATCTTTGGAGCCACAGGATTCAC
AGGCCAACTTGTGGCCGAATATTACCTACGGACATATGGCGCCCCCTCCT
CCTCTTTCAACTGGACCATCGCCGGTCGCAATCAAAAAAAGCTCCAAGAG
ATCAAAAAAGACTTGGGCATCAACAAAAACCTGCCGGAAGCCAAGGACAT
AAAGACTCTTGTTGCCAACTCCAACGACTCAGCCTCCCTAGAGGCGATCG
CGAAGAATACGAAGGTGGTGGTCACGACGGTGGGGCCTTACATGAAATAT
GGGAGTAAGCTCGTGGCAGCATGTGCGGCGAAGGGGACGCATTACGCAGA
TTTGACGGGAGAGGTGCCTTGGATCAAGGACATGATCGCCGCCAATGAAG
AAAAGGCTAAAGCGTCCGGTGCGCGGATTCTGCACTGCTGTGGTTTTGAC
TCGGTGCCGAGTGACCTGGGCACCCACGTCATGTACAACGCCCTGGTGAA
GAGGGGGCTGACCCCTACCGAGATCAAGTTTATCGTCGGGCCTTCTAAGG
GAGGGGTGAGTGGCGGCACCGTTCACTCTCTCGCAGGCGTGCTCCAGAGC
GGGCGATTGCGTGACATGGGCAATCCATACCTCCTCTTGTCAGGGGGGAA
GAAGGGAGGGAGGGGGGGAGGAGTGACGGTGAAGGAGCCGATGGGCGTCG
GCTGGGACCGAGACGTCCAGAGGTGGAATGCGCCGTTTGTGATGGCGGGG
ATTAACACACGGGTAGTGGTGCGCTCGTCGTATTTGATGGACCGTCTGCC
CTTTGAGTACACCGAGACCATGTCCTTCCCCAAGGGGGTGGGAGGGTTCT
TGTCCGCGTGTGCTCTGACCCTAGGGCTTGCCCTGGTGGTGACTTGCCTG
CTCATTCCTCCCATCCGGTGGTTGGTGTTGAAGATGCTCCCGCCCGGGTC
GGGGCCGGGGGAGGAGATGCGGAAGACGGGCTTTGCATTGATTTATGTGG
TGGGGAAGGGGGTGGATAAGGCGGGGAAGGAGGTGGTGCTGAAGGGATCG
GTTAGAATTGCAGGAGACCCGGGATATCAGGAAACCGCCAAGATGCTCGC
TGAGACCGGTATGGCGCTAGCCAAAGACGAAGTTGATGCTGCGCCTGGAT
TTTTGACGCCTGCCTCTGCCTTGGGCGACAAATTGGTAACACGGCTCAAG
AAAAGGGATCTGGTGGTGGAGGTGGAGGGCGAGTGA
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Synonyms
Publications