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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr8 | genome | chr8:1079320..1082084 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G03820.1 vs.
Match: EWM26852.1 (iojap-like protein [Nannochloropsis gaditana]) HSP 1 Score: 406.4 bits (1043), Expect = 1.300e-109 Identity = 276/492 (56.10%), Postives = 333/492 (67.68%), Query Frame = 0
Query: 1 MLSLSSKAVLRQTAATTGRNSKTRFASMWWTPACAFGSTNNSSRPPPSASPASSSSSSRRTPVTTSTKPSPAWPPSRKELAQMFEAGYESYEKNDKKGLGRGAMSWKECEDEGGHHDGEGEKEREGGAKGSTSLSPHHEGYDAEVVARQRRELLKATTAAAAARTGPTYLEQDELKARSEERGKDGVPAMGGAGVVEGGEEEDPNDNKGGSSSSSGGGIVSGGGGGGG--GGGGEGGKVAANSGSSSSSSDSNTSLENWTWAKPSRLSQEQEEQQSNSTRSGSRTASSSTKSRLGHIPVVLRTLLTPAEVVQSLTELGGGGVTSVDIRGKGNFDAEAMIFASGRSGGHLRRMADALVGALKARGVEEERAPGVTGAEGYECDDWMIVDGGNVIVHLMEPSQRKALELEQFWGGAAEGMEEAKGGSVGEVVMPVVAGTSEAAWNQAHDELLERFPCDEGYAPENEGHSGRERELRRVLG-GQRGFTGRRARRR 490
MLS ++K +LR++A GR R S+W + + R S S S+ S R+ + S+ SP+WPPSR+E+A+MFEAGYESYEKN++KG+GR AM+WKE GH + G++ +GGA G SLSPHH+GYDA + RQR EL KATTAA ART YL ++E KA E + A+ AG+V GG EDP+D S S++GGG GG G G G G +GG VA + S+SD SLE WTWA+PSRL+QE+ + G +T SR G IPV+ RTLL PAEVV++L LGG V SVDIRGKGNF+AEAMIFASGRSGGHLRRMAD +VGALKARG+EE APGVTGAEGY+C+DWMIVDGGNVIVHLMEPSQR AL LE FWG EG E KGG VG++VMPV A SE AW+QAHD LLER+P DE YAPE E + RERELRRVLG G +G RR RR+
Sbjct: 1 MLSTTTKLMLRRSAV--GR----RDTSLWSSAG------KITVRSLASDSKDVSNGSRGRSKTSFSSTVSPSWPPSRQEMARMFEAGYESYEKNERKGMGRSAMAWKE----DGHDEAGGQEGSQGGAGGG-SLSPHHDGYDATEMTRQRMELSKATTAATLARTDAKYLNEEERKAHDAE-----MKALH-AGIVAGGGGEDPDD----SPSATGGGNHGLGGRGSGREGEGTKGGAVA--KAQAGSNSDPEKSLEKWTWARPSRLAQEEAQ--------GRKT------SRAGAIPVLPRTLLRPAEVVEALVALGGEDVASVDIRGKGNFNAEAMIFASGRSGGHLRRMADTVVGALKARGIEEMEAPGVTGAEGYDCEDWMIVDGGNVIVHLMEPSQRAALGLEGFWG---EGEEGRKGGRVGDLVMPVAATASEEAWSQAHDALLERYPADEEYAPEREEEARRERELRRVLGPGGKGMGERRRRRK 446
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G03820.1 ID=NO08G03820.1|Name=NO08G03820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2275bp
AAACAGATACCAGGGGCCACACATTTTGCAGAGGTACCATCGCTTGTACG
CGCGTGCAGAGTTTCATAAGAACTTCTGCTCCAAACCATGCTTTCCTTGT
CGAGCAAAGCGGTCCTGCGCCAGACTGCCGCGACGACGGGCAGGAACTCT
AAAACCCGCTTCGCTTCAATGTGGTGGACTCCAGCCTGTGCTTTCGGCTC
CACAAACAACAGCAGTCGCCCTCCCCCCTCCGCGTCTCCCGCCTCCTCTT
CATCCTCCAGCCGCAGAACCCCCGTCACTACCTCCACCAAGCCCTCTCCC
GCATGGCCCCCTTCCCGCAAAGAGCTCGCGCAGATGTTCGAGGCGGGATA
CGAAAGTTACGAAAAAAACGATAAAAAAGGTTTGGGTCGTGGAGCCATGT
CTTGGAAGGAATGCGAGGACGAAGGGGGGCATCATGATGGGGAGGGAGAG
AAAGAGAGGGAAGGAGGAGCGAAGGGATCGACATCGTTGTCTCCCCATCA
TGAAGGGTATGACGCGGAGGTGGTAGCGAGGCAGAGGCGGGAATTGTTGA
AAGCGACAACAGCAGCAGCAGCAGCACGGACAGGACCAACGTACCTGGAA
CAAGATGAGTTGAAGGCACGGAGCGAGGAGAGGGGGAAGGATGGAGTGCC
AGCCATGGGGGGGGCGGGGGTGGTGGAGGGAGGGGAGGAGGAAGACCCGA
ACGACAATAAGGGAGGGAGCAGTAGCAGCAGCGGTGGTGGTATTGTGAGT
GGTGGAGGTGGAGGTGGAGGTGGAGGAGGAGGAGAAGGAGGCAAAGTGGC
GGCTAACAGCGGTAGCAGCAGCAGTAGCAGCGATAGCAACACGAGCTTGG
AGAACTGGACGTGGGCGAAGCCCTCCCGTCTTTCTCAGGAGCAGGAGGAG
CAGCAGAGCAACAGCACCAGGAGTGGCAGCAGAACCGCGAGCTCGTCGAC
GAAAAGTAGGTTGGGACATATCCCCGTGGTGCTCCGGACGTTGTTGACTC
CCGCGGAGGTGGTGCAGAGTCTGACTGAGTTAGGGGGAGGGGGAGTGACG
AGCGTCGACATCCGGGGAAAGGGGAATTTCGACGCAGAAGCGATGATCTT
TGCGTCGGGTAGGAGTGGAGGTCACTTGAGACGGATGGCCGATGCGCTGG
TGGGTGCGCTGAAGGCACGGGGAGTGGAGGAGGAAAGGGCTCCGGGAGTG
ACGGGTGCAGAGGGCTACGAGTGCGATGACTGGATGATTGTGGATGGAGG
CAATGTGATTGTGCATCTGATGGAGCCGAGCCAACGCAAGGCCTTGGAGC
TTGAACAGTTCTGGGGCGGGGCTGCGGAGGGAATGGAGGAGGCGAAGGGG
GGGAGCGTTGGGGAGGTGGTGATGCCGGTGGTGGCAGGGACATCGGAGGC
GGCTTGGAATCAGGCGCATGACGAGTTGTTGGAGCGGTTTCCGTGTGATG
AGGGATATGCACCTGAAAACGAGGGGCACTCAGGGAGAGAGAGGGAGTTG
AGGAGGGTCTTGGGGGGGCAAAGGGGGTTCACAGGACGGAGGGCGCGGAG
GAGGGCGTAGGTTGGCGCTGGGAGGTAGGGAGGGAAGGAAAGAAGGAGGG
AAGGAGGAGGTGATTTGTGTACAGGAATGGGTTGTATGATTTTATTTTCA
TTTTTAAATCTTGATTTTCTTTTATGCCTAGCTACACATCTGCCAATTTC
GGTTTGCGTTGCCCCTTTGTGGAAAATTTCGTAATATCACCCTAAGAAAG
AGACTCCAGAGGTAGAGGTAGCAGTAGCAGCAGCAGCAGCAGTACCAGCG
ACAATTGTCGCCCGTCGCCGGTGGCAGCGGGATTGGAAAAAGAAAAGGAG
AAAGGGGAAAGAAGAGAAGAAAGGAGCGGATTGAGTTCCTTGCACACAGA
TAAAAATTACAAAGGGCTGAAACGGTAAAGAGACAAAGAGAGAGCCATGA
ACATTAAGAGGGGAATATATATATATATATATATATATATATATATGTAT
ACGCAGACCTGAGACAGTTAATAATGAGGGGTGTGTATGAGTGAAATTTG
GGGAGGGAAGGGGCGAAGGACAGGGAGGGAGGGTGGGAGGGCGTGTTTCA
TGCCACCTAGCTCTCGCTAAGCTAGAGGAATTAGGGTGCACGTGTGCTAC
TAGTCGGTGTGAAGAAGGAGCAGCGGCAATATCAGTGAGAATAGCAGCAG
CAGTAGCTGCAGCAGCAGCATCCATGTGAGGACACACCAAGAAGGAAGAA
AGAAAGAAATGACGAGGAAAAAGAA back to topprotein sequence of NO08G03820.1 >NO08G03820.1-protein ID=NO08G03820.1-protein|Name=NO08G03820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MLSLSSKAVLRQTAATTGRNSKTRFASMWWTPACAFGSTNNSSRPPPSAS
PASSSSSSRRTPVTTSTKPSPAWPPSRKELAQMFEAGYESYEKNDKKGLG
RGAMSWKECEDEGGHHDGEGEKEREGGAKGSTSLSPHHEGYDAEVVARQR
RELLKATTAAAAARTGPTYLEQDELKARSEERGKDGVPAMGGAGVVEGGE
EEDPNDNKGGSSSSSGGGIVSGGGGGGGGGGGEGGKVAANSGSSSSSSDS
NTSLENWTWAKPSRLSQEQEEQQSNSTRSGSRTASSSTKSRLGHIPVVLR
TLLTPAEVVQSLTELGGGGVTSVDIRGKGNFDAEAMIFASGRSGGHLRRM
ADALVGALKARGVEEERAPGVTGAEGYECDDWMIVDGGNVIVHLMEPSQR
KALELEQFWGGAAEGMEEAKGGSVGEVVMPVVAGTSEAAWNQAHDELLER
FPCDEGYAPENEGHSGRERELRRVLGGQRGFTGRRARRRA* back to topmRNA from alignment at chr8:1079320..1082084- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G03820.1 ID=NO08G03820.1|Name=NO08G03820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2765bp|location=Sequence derived from alignment at chr8:1079320..1082084- (Nannochloropsis oceanica)
AAACAGATACCAGGGGCCACACATTTTGCAGAGGTACCATCGCTTGTACG
CGCGTGCAGAGTTTCATAAGAACTTCTGCTCCAAACCATGCTTTCCTTGT
CGAGCAAAGCGGTCCTGCGCCAGACTGCCGCGACGACGGGCAGGAACTCT
AAAACCCGCTTCGCTTCAATGTGGTGGACTCCAGGTAAGCAATGAGAGAC
ACGCGTACTCCCCGCTCATAGCTACGTATATGTCTGCTATAGGTGCGCAC
TGATGCATGAGAGATTTTGGGGGGTTGTCCCCTCTCCGCTTCAGGTAAGG
AGCCGCGCGGAACAGCTTCTGTCGACTTCAAGGTAGAGAGAGACCTCAAC
CCCCTCCCTGCCAACGCTCCCTCGACGTCCATACCTGTCATGCATGCCTG
TGCGTAGTGGTAGACTGTGTCGTTACAGACCTTGGCAGTTTGCCAGGCGT
TCTCTCCCGCTTTTTGATGATGGTGTACCGAGAACAAAACATGACACCCC
CCTTCGACACATCAATCTGGCTTCATATACTCATGTCACCATATCACCTG
CAACCACTACGATAATATGCTCGCATCAGCCATTCCTTTAACCGTATTAT
TCAATTTCCTCTCATCCCTCGCAACCCCTATCTGGATCTCCTCTTTCTCT
CTCCTCCAACCCCCAACCCCCAAGCCTGTGCTTTCGGCTCCACAAACAAC
AGCAGTCGCCCTCCCCCCTCCGCGTCTCCCGCCTCCTCTTCATCCTCCAG
CCGCAGAACCCCCGTCACTACCTCCACCAAGCCCTCTCCCGCATGGCCCC
CTTCCCGCAAAGAGCTCGCGCAGATGTTCGAGGCGGGATACGAAAGTTAC
GAAAAAAACGATAAAAAAGGTTTGGGTCGTGGAGCCATGTCTTGGAAGGA
ATGCGAGGACGAAGGGGGGCATCATGATGGGGAGGGAGAGAAAGAGAGGG
AAGGAGGAGCGAAGGGATCGACATCGTTGTCTCCCCATCATGAAGGGTAT
GACGCGGAGGTGGTAGCGAGGCAGAGGCGGGAATTGTTGAAAGCGACAAC
AGCAGCAGCAGCAGCACGGACAGGACCAACGTACCTGGAACAAGATGAGT
TGAAGGCACGGAGCGAGGAGAGGGGGAAGGATGGAGTGCCAGCCATGGGG
GGGGCGGGGGTGGTGGAGGGAGGGGAGGAGGAAGACCCGAACGACAATAA
GGGAGGGAGCAGTAGCAGCAGCGGTGGTGGTATTGTGAGTGGTGGAGGTG
GAGGTGGAGGTGGAGGAGGAGGAGAAGGAGGCAAAGTGGCGGCTAACAGC
GGTAGCAGCAGCAGTAGCAGCGATAGCAACACGAGCTTGGAGAACTGGAC
GTGGGCGAAGCCCTCCCGTCTTTCTCAGGAGCAGGAGGAGCAGCAGAGCA
ACAGCACCAGGAGTGGCAGCAGAACCGCGAGCTCGTCGACGAAAAGTAGG
TTGGGACATATCCCCGTGGTGCTCCGGACGTTGTTGACTCCCGCGGAGGT
GGTGCAGAGTCTGACTGAGTTAGGGGGAGGGGGAGTGACGAGCGTCGACA
TCCGGGGAAAGGGGAATTTCGACGCAGAAGCGATGATCTTTGCGTCGGGT
AGGAGTGGAGGTCACTTGAGACGGATGGCCGATGCGCTGGTGGGTGCGCT
GAAGGCACGGGGAGTGGAGGAGGAAAGGGCTCCGGGAGTGACGGGTGCAG
AGGGCTACGAGTGCGATGACTGGATGATTGTGGATGGAGGCAATGTGATT
GTGCATCTGATGGAGCCGAGCCAACGCAAGGCCTTGGAGCTTGAACAGTT
CTGGGGCGGGGCTGCGGAGGGAATGGAGGAGGCGAAGGGGGGGAGCGTTG
GGGAGGTGGTGATGCCGGTGGTGGCAGGGACATCGGAGGCGGCTTGGAAT
CAGGCGCATGACGAGTTGTTGGAGCGGTTTCCGTGTGATGAGGGATATGC
ACCTGAAAACGAGGGGCACTCAGGGAGAGAGAGGGAGTTGAGGAGGGTCT
TGGGGGGGCAAAGGGGGTTCACAGGACGGAGGGCGCGGAGGAGGGCGTAG
GTTGGCGCTGGGAGGTAGGGAGGGAAGGAAAGAAGGAGGGAAGGAGGAGG
TGATTTGTGTACAGGAATGGGTTGTATGATTTTATTTTCATTTTTAAATC
TTGATTTTCTTTTATGCCTAGCTACACATCTGCCAATTTCGGTTTGCGTT
GCCCCTTTGTGGAAAATTTCGTAATATCACCCTAAGAAAGAGACTCCAGA
GGTAGAGGTAGCAGTAGCAGCAGCAGCAGCAGTACCAGCGACAATTGTCG
CCCGTCGCCGGTGGCAGCGGGATTGGAAAAAGAAAAGGAGAAAGGGGAAA
GAAGAGAAGAAAGGAGCGGATTGAGTTCCTTGCACACAGATAAAAATTAC
AAAGGGCTGAAACGGTAAAGAGACAAAGAGAGAGCCATGAACATTAAGAG
GGGAATATATATATATATATATATATATATATATATGTATACGCAGACCT
GAGACAGTTAATAATGAGGGGTGTGTATGAGTGAAATTTGGGGAGGGAAG
GGGCGAAGGACAGGGAGGGAGGGTGGGAGGGCGTGTTTCATGCCACCTAG
CTCTCGCTAAGCTAGAGGAATTAGGGTGCACGTGTGCTACTAGTCGGTGT
GAAGAAGGAGCAGCGGCAATATCAGTGAGAATAGCAGCAGCAGTAGCTGC
AGCAGCAGCATCCATGTGAGGACACACCAAGAAGGAAGAAAGAAAGAAAT
GACGAGGAAAAAGAA back to topCoding sequence (CDS) from alignment at chr8:1079320..1082084- >NO08G03820.1 ID=NO08G03820.1|Name=NO08G03820.1|organism=Nannochloropsis oceanica|type=CDS|length=1473bp|location=Sequence derived from alignment at chr8:1079320..1082084- (Nannochloropsis oceanica)
ATGCTTTCCTTGTCGAGCAAAGCGGTCCTGCGCCAGACTGCCGCGACGAC
GGGCAGGAACTCTAAAACCCGCTTCGCTTCAATGTGGTGGACTCCAGCCT
GTGCTTTCGGCTCCACAAACAACAGCAGTCGCCCTCCCCCCTCCGCGTCT
CCCGCCTCCTCTTCATCCTCCAGCCGCAGAACCCCCGTCACTACCTCCAC
CAAGCCCTCTCCCGCATGGCCCCCTTCCCGCAAAGAGCTCGCGCAGATGT
TCGAGGCGGGATACGAAAGTTACGAAAAAAACGATAAAAAAGGTTTGGGT
CGTGGAGCCATGTCTTGGAAGGAATGCGAGGACGAAGGGGGGCATCATGA
TGGGGAGGGAGAGAAAGAGAGGGAAGGAGGAGCGAAGGGATCGACATCGT
TGTCTCCCCATCATGAAGGGTATGACGCGGAGGTGGTAGCGAGGCAGAGG
CGGGAATTGTTGAAAGCGACAACAGCAGCAGCAGCAGCACGGACAGGACC
AACGTACCTGGAACAAGATGAGTTGAAGGCACGGAGCGAGGAGAGGGGGA
AGGATGGAGTGCCAGCCATGGGGGGGGCGGGGGTGGTGGAGGGAGGGGAG
GAGGAAGACCCGAACGACAATAAGGGAGGGAGCAGTAGCAGCAGCGGTGG
TGGTATTGTGAGTGGTGGAGGTGGAGGTGGAGGTGGAGGAGGAGGAGAAG
GAGGCAAAGTGGCGGCTAACAGCGGTAGCAGCAGCAGTAGCAGCGATAGC
AACACGAGCTTGGAGAACTGGACGTGGGCGAAGCCCTCCCGTCTTTCTCA
GGAGCAGGAGGAGCAGCAGAGCAACAGCACCAGGAGTGGCAGCAGAACCG
CGAGCTCGTCGACGAAAAGTAGGTTGGGACATATCCCCGTGGTGCTCCGG
ACGTTGTTGACTCCCGCGGAGGTGGTGCAGAGTCTGACTGAGTTAGGGGG
AGGGGGAGTGACGAGCGTCGACATCCGGGGAAAGGGGAATTTCGACGCAG
AAGCGATGATCTTTGCGTCGGGTAGGAGTGGAGGTCACTTGAGACGGATG
GCCGATGCGCTGGTGGGTGCGCTGAAGGCACGGGGAGTGGAGGAGGAAAG
GGCTCCGGGAGTGACGGGTGCAGAGGGCTACGAGTGCGATGACTGGATGA
TTGTGGATGGAGGCAATGTGATTGTGCATCTGATGGAGCCGAGCCAACGC
AAGGCCTTGGAGCTTGAACAGTTCTGGGGCGGGGCTGCGGAGGGAATGGA
GGAGGCGAAGGGGGGGAGCGTTGGGGAGGTGGTGATGCCGGTGGTGGCAG
GGACATCGGAGGCGGCTTGGAATCAGGCGCATGACGAGTTGTTGGAGCGG
TTTCCGTGTGATGAGGGATATGCACCTGAAAACGAGGGGCACTCAGGGAG
AGAGAGGGAGTTGAGGAGGGTCTTGGGGGGGCAAAGGGGGTTCACAGGAC
GGAGGGCGCGGAGGAGGGCGTAG back to top
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