NO08G03760.1, NO08G03760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03760.1
Unique NameNO08G03760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2126
Alignment locationchr8:1057935..1060226 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1057935..1060226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO08G03760.1 vs.
Match: EWM26843.1 (ubiquitin family [Nannochloropsis gaditana])

HSP 1 Score: 399.4 bits (1025), Expect = 1.500e-107
Identity = 276/490 (56.33%), Postives = 316/490 (64.49%), Query Frame = 0 
Query:    3 TDPLNTSGSSSTSSPRTPGSEGIDGSDSSETTGLL------------------LGGPVSRSGSSRSSS-----------RTSRTSSRNTPPPPPPPPPSTASSSSLRSTPPPPPQPLPPQSEGAASSSSSSSLSINITNTSLSGSGRGEATNQAQSTTTSATMAASPAPLREREEGLVSLRVKTLDSKEHVFEVNTNTLTVSEFKSLLFRTLPGAEGKFLRLITQGKMLIPDTALLNSFKLLDQTVVHCVLSDQPPRAHIGHIGIDVDGGGGREEGQVAYPEVNDDPVLRRGLDRLRTHGFSIQEVAALRSYFNAQVLAYAARQPSREG---ESVEERRNRMEEEWMGRQGEGSEFALNTNRVVATRAVFAAARRGGGGEGGGGELGAGTSREFVYGFIMGFALGFISLFWLWNIPQTHTQKMGIILGVSCSLGWNIIRRAEMEGGTEGGAGSGGGNELPSTFGNGGGGVDTAGAASAAAAAAAAAGTGV 461
            TDPLN+SG +ST++PRTP S   D SDSSET  LL                    G  S SGS+ SS+           RTSRT  R TPPP   PPP      S    PP       P+S    ++       + I   S      G  T+Q  ST  +     S        E L+SLR+KTLDSKEH+ EV+ + LTVSE KS L R+LPGAEGKFLRLITQGK+L PDTA L SF++ D+ VVHCV SDQPPRAHI    +D++ G G   G+V YP+VNDDP  RRG DRLRTHGFSIQEVAALRSYFNAQV+AYAA + + EG   E+ E+RR RME+EWMGRQGE SEFALNTNRVVATRAVFAA RRGG  +G G E+G GTSR+F+YGFIMGFALGFISLFWLWN+PQTHTQKMGIILGVSCSLGWNIIRRAEMEG  E   G   G++ P  F  GG GVD   A S         GTGV
Sbjct:    5 TDPLNSSGGNSTTTPRTPNSGASDESDSSETGLLLGRVTGSSSTAPALNKSSRRNGSTSVSGSTTSSNNTSTTESDACIRTSRTRVRGTPPPSSSPPPLPRPPQSSPGLPPAQFVASGPRSTPGVATVREPPADVLIHAKSSVTCHDG--TSQLDSTILNGGTPGS--------EKLISLRIKTLDSKEHLMEVDASCLTVSELKSKLSRSLPGAEGKFLRLITQGKLLTPDTASLESFRISDRAVVHCVFSDQPPRAHIR---VDLERGAG--SGEVEYPDVNDDPAQRRGFDRLRTHGFSIQEVAALRSYFNAQVVAYAASREAEEGPDAETAEDRRLRMEDEWMGRQGEESEFALNTNRVVATRAVFAA-RRGGMEDGRGLEMGTGTSRDFLYGFIMGFALGFISLFWLWNVPQTHTQKMGIILGVSCSLGWNIIRRAEMEG--ETAEGGEEGSDFPPGF--GGAGVDGGPAGSVGERGTPIHGTGV 474
The following BLAST results are available for this feature:
BLAST of NO08G03760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26843.11.500e-10756.33ubiquitin family [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03760NO08G03760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03760.1NO08G03760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03760.1.cds1NO08G03760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03760.1.cds2NO08G03760.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03760.1 ID=NO08G03760.1|Name=NO08G03760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2126bp
GGAAGTGTGAGACATGATTGGGTCATATGAAGGCAAATAAGGGCTTGAGG
ATTGACGCACGATGACGCCAGGCGCTGGCGACGGTAAATCCTCGTACTTC
CAATATGTCTTGTTTTGCTTTCACGATCACATCAGCACCAGCACCACATT
GACAGCGCAACTAAAGTTAGAAAAAGTCTTGGTGGAGAGAGGGGAAAGAG
AGGCCGTTGATGCGTCAGCGGCCGGATCTTGGACAAAAAGCACTCTAAGA
CTCAAACTAAGCAGCTAGACATGGTGTCTGCAAACGTCTCAGCTGTGACT
TATGCACACCACCTCATTTTCGCTCTCTGAATCTCTTCTTACTCTCCCCC
AATCCACAGGCCGCGACAGTCATTTTGTCCGCACTGCGTTAACGCGCGTG
TCGTGGGTCCTTCCTATCCCCCGCCAACTTGCCCTTGAACTATCCCACCA
GCGCGCGCCCCATCCCTTACTGCGTCATGGCCACCGATCCCCTGAATACC
AGCGGGAGCAGCAGCACCAGCAGTCCTCGCACACCAGGTAGCGAGGGTAT
AGATGGGTCGGACTCAAGCGAGACGACGGGACTCTTATTAGGGGGACCTG
TGAGCAGAAGTGGCAGCAGCAGGAGTAGCAGCCGAACGTCCCGGACAAGT
AGTCGCAATACGCCGCCTCCTCCTCCCCCTCCTCCTCCCTCGACAGCATC
ATCATCGTCGTTGCGTTCGACTCCCCCTCCTCCTCCACAGCCGCTGCCAC
CACAATCGGAAGGAGCTGCTTCCTCCTCGTCTTCCTCCTCACTCTCCATC
AACATAACTAACACCAGCCTCTCCGGAAGCGGCCGAGGTGAAGCCACGAA
TCAAGCCCAAAGCACCACCACAAGCGCGACCATGGCTGCCTCTCCAGCTC
CCCTAAGAGAAAGAGAAGAAGGCCTCGTCTCCCTGCGTGTCAAGACGCTC
GACTCCAAAGAACACGTCTTCGAAGTGAATACCAACACGCTCACCGTCTC
TGAGTTCAAGTCCCTGCTCTTCCGTACCTTACCTGGGGCGGAGGGTAAGT
TTCTTCGCCTCATCACACAGGGCAAGATGTTGATACCTGATACGGCGTTG
CTTAATTCCTTCAAATTACTGGACCAGACGGTCGTCCACTGTGTCTTGTC
CGACCAGCCCCCCCGCGCCCACATTGGGCACATAGGGATTGACGTTGATG
GAGGAGGAGGGAGGGAGGAAGGACAAGTGGCCTATCCCGAGGTCAATGAC
GATCCGGTATTGAGGAGGGGGCTTGATAGACTTAGGACACACGGATTTTC
GATACAAGAGGTGGCGGCGTTAAGGTCTTATTTTAATGCGCAGGTGCTAG
CGTATGCGGCCCGCCAGCCGTCGAGGGAGGGGGAGTCAGTAGAGGAGAGG
AGGAATAGGATGGAGGAGGAGTGGATGGGCAGGCAGGGTGAGGGGAGTGA
GTTTGCGTTGAACACGAATAGGGTGGTGGCGACACGGGCGGTGTTTGCAG
CAGCTAGGAGGGGAGGAGGGGGGGAGGGAGGGGGGGGAGAGCTGGGCGCG
GGGACGTCGAGGGAGTTTGTTTATGGATTTATAATGGGCTTTGCGCTCGG
CTTCATCTCCCTGTTTTGGTTGTGGAACATTCCTCAGACGCATACCCAAA
AGATGGGCATCATTTTAGGCGTCTCTTGCTCCCTCGGATGGAACATAATT
CGAAGGGCGGAGATGGAGGGAGGGACGGAGGGAGGAGCGGGAAGCGGAGG
AGGGAATGAGTTGCCGTCGACCTTTGGAAATGGGGGTGGAGGGGTGGACA
CGGCGGGTGCTGCTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGGACA
GGAGTACCGCCGGCGACAGTGGGCGTGGGACAATGAGGGAGGGAAGGAGT
GAGCGAGGAAGGGAGGAAAGGAGGGTTTGTGTATATAATTAGAAAGAGAG
TAATGATAGGGGTGGTCTTTTCTTTTGCTCTAACAAACGTTGAGAGGAGA
GGGCGGGGAGAGGCTGAGCAATAAGAAAGAGGGAGGGAAAGAGGGGAAGG
AGTAGGTGAGTGTAATAAATATTGCACATCAACAACATGGCCAACCATTA
AATCAATCTAGAGATTGCCAGGGCGC
back to top

protein sequence of NO08G03760.1

>NO08G03760.1-protein ID=NO08G03760.1-protein|Name=NO08G03760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=470bp
MATDPLNTSGSSSTSSPRTPGSEGIDGSDSSETTGLLLGGPVSRSGSSRS
SSRTSRTSSRNTPPPPPPPPPSTASSSSLRSTPPPPPQPLPPQSEGAASS
SSSSSLSINITNTSLSGSGRGEATNQAQSTTTSATMAASPAPLREREEGL
VSLRVKTLDSKEHVFEVNTNTLTVSEFKSLLFRTLPGAEGKFLRLITQGK
MLIPDTALLNSFKLLDQTVVHCVLSDQPPRAHIGHIGIDVDGGGGREEGQ
VAYPEVNDDPVLRRGLDRLRTHGFSIQEVAALRSYFNAQVLAYAARQPSR
EGESVEERRNRMEEEWMGRQGEGSEFALNTNRVVATRAVFAAARRGGGGE
GGGGELGAGTSREFVYGFIMGFALGFISLFWLWNIPQTHTQKMGIILGVS
CSLGWNIIRRAEMEGGTEGGAGSGGGNELPSTFGNGGGGVDTAGAASAAA
AAAAAAGTGVPPATVGVGQ*
back to top

mRNA from alignment at chr8:1057935..1060226+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03760.1 ID=NO08G03760.1|Name=NO08G03760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2292bp|location=Sequence derived from alignment at chr8:1057935..1060226+ (Nannochloropsis oceanica)
GGAAGTGTGAGACATGATTGGGTCATATGAAGGCAAATAAGGGCTTGAGG
ATTGACGCACGATGACGCCAGGCGCTGGCGACGGTAAATCCTCGTACTTC
CAATATGTCTTGTTTTGCTTTCACGATCACATCAGCACCAGCACCACATT
GACAGCGCAACTAAAGTTAGAAAAAGTCTTGGTGGAGAGAGGGGAAAGAG
AGGCCGTTGATGCGTCAGCGGCCGGATCTTGGACAAAAAGCACTCTAAGA
CTCAAACTAAGCAGCTAGACATGGTGTCTGCAAACGTCTCAGCTGTGACT
TATGCACACCACCTCATTTTCGCTCTCTGAATCTCTTCTTACTCTCCCCC
AATCCACAGGCCGCGACAGTCATTTTGTCCGCACTGCGTTAACGCGCGTG
TCGTGGGTCCTTCCTATCCCCCGCCAACTTGCCCTTGAACTATCCCACCA
GCGCGCGCCCCATCCCTTACTGCGTCATGGCCACCGATCCCCTGAATACC
AGCGGGAGCAGCAGCACCAGCAGTCCTCGCACACCAGGTAGCGAGGGTAT
AGATGGGTCGGACTCAAGCGAGACGACGGGACTCTTATTAGGGGGACCTG
TGAGCAGAAGTGGCAGCAGCAGGAGTAGCAGCCGAACGTCCCGGACAAGT
AGTCGCAATACGCCGCCTCCTCCTCCCCCTCCTCCTCCCTCGACAGCATC
ATCATCGTCGTTGCGTTCGACTCCCCCTCCTCCTCCACAGCCGCTGCCAC
CACAATCGGAAGGAGCTGCTTCCTCCTCGTCTTCCTCCTCACTCTCCATC
AACATAACTAACACCAGCCTCTCCGGAAGCGGCCGAGGTGAAGCCACGAA
TCAAGCCCAAAGCACCACCACAAGCGCGACCATGGCTGCCTCTCCAGCTC
CCCTAAGAGAAAGAGAAGAAGGCCTCGTCTCCCTGCGTGTCAAGACGCTC
GACTCCAAAGAACACGTCTTCGAAGTGAATACCAACACGCTCACCGTCTC
TGAGTTCAAGTCCCTGCTCTTCCGTACCTTACCTGGGGCGGAGGGTAAGT
TTCTTCGCCTCATCACACAGGGCAAGATGTTGATACCTGATACGGCGTTG
CTTAATTCCTTCAAATTACTGGACCAGACGGTCGTCCACTGTGTCTTGTC
CGACCAGCCCCCCCGCGCCCACATTGGGCACATAGGGATTGACGTTGATG
GAGGAGGAGGGAGGGAGGAAGGACAAGTGGCCTATCCCGAGGTCAATGAC
GATCCGGTATTGAGGAGGGGGCTTGATAGACTTAGGACACACGGATTTTC
GATACAAGAGGTGGCGGCGTTAAGGTCTTATTTTAATGCGCAGGTGCTAG
CGTATGCGGCCCGCCAGCCGTCGAGGGAGGGGGAGTCAGTAGAGGAGAGG
AGGAATAGGATGGAGGAGGAGTGGATGGGCAGGCAGGGTGAGGGGAGTGA
GTTTGCGTTGAACACGAATAGGGTGGTGGCGACACGGGCGGTGTTTGCAG
CAGCTAGGAGGGGAGGAGGGGGGGAGGGAGGGGGGGGAGAGCTGGGCGCG
GGGACGTCGAGGGAGTTTGTTTATGGATTTATAATGGTACGTCGGAGTTT
AGGAAATAGGAGGGGGGGATTCTACTTGTGAATGAGACGTCAAGGTTTGA
GTGTGTATTTACTCTTGCTTTCATCTTTGTCACGACGCGCCTGACTGACT
ATAGAGCCCTTGTCCTCACTCATCTTCTTCCTCTTTACCCTCTTGGCCAC
AGGGCTTTGCGCTCGGCTTCATCTCCCTGTTTTGGTTGTGGAACATTCCT
CAGACGCATACCCAAAAGATGGGCATCATTTTAGGCGTCTCTTGCTCCCT
CGGATGGAACATAATTCGAAGGGCGGAGATGGAGGGAGGGACGGAGGGAG
GAGCGGGAAGCGGAGGAGGGAATGAGTTGCCGTCGACCTTTGGAAATGGG
GGTGGAGGGGTGGACACGGCGGGTGCTGCTTCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGGGACAGGAGTACCGCCGGCGACAGTGGGCGTGGGACAAT
GAGGGAGGGAAGGAGTGAGCGAGGAAGGGAGGAAAGGAGGGTTTGTGTAT
ATAATTAGAAAGAGAGTAATGATAGGGGTGGTCTTTTCTTTTGCTCTAAC
AAACGTTGAGAGGAGAGGGCGGGGAGAGGCTGAGCAATAAGAAAGAGGGA
GGGAAAGAGGGGAAGGAGTAGGTGAGTGTAATAAATATTGCACATCAACA
ACATGGCCAACCATTAAATCAATCTAGAGATTGCCAGGGCGC
back to top

Coding sequence (CDS) from alignment at chr8:1057935..1060226+

>NO08G03760.1 ID=NO08G03760.1|Name=NO08G03760.1|organism=Nannochloropsis oceanica|type=CDS|length=1410bp|location=Sequence derived from alignment at chr8:1057935..1060226+ (Nannochloropsis oceanica)
ATGGCCACCGATCCCCTGAATACCAGCGGGAGCAGCAGCACCAGCAGTCC
TCGCACACCAGGTAGCGAGGGTATAGATGGGTCGGACTCAAGCGAGACGA
CGGGACTCTTATTAGGGGGACCTGTGAGCAGAAGTGGCAGCAGCAGGAGT
AGCAGCCGAACGTCCCGGACAAGTAGTCGCAATACGCCGCCTCCTCCTCC
CCCTCCTCCTCCCTCGACAGCATCATCATCGTCGTTGCGTTCGACTCCCC
CTCCTCCTCCACAGCCGCTGCCACCACAATCGGAAGGAGCTGCTTCCTCC
TCGTCTTCCTCCTCACTCTCCATCAACATAACTAACACCAGCCTCTCCGG
AAGCGGCCGAGGTGAAGCCACGAATCAAGCCCAAAGCACCACCACAAGCG
CGACCATGGCTGCCTCTCCAGCTCCCCTAAGAGAAAGAGAAGAAGGCCTC
GTCTCCCTGCGTGTCAAGACGCTCGACTCCAAAGAACACGTCTTCGAAGT
GAATACCAACACGCTCACCGTCTCTGAGTTCAAGTCCCTGCTCTTCCGTA
CCTTACCTGGGGCGGAGGGTAAGTTTCTTCGCCTCATCACACAGGGCAAG
ATGTTGATACCTGATACGGCGTTGCTTAATTCCTTCAAATTACTGGACCA
GACGGTCGTCCACTGTGTCTTGTCCGACCAGCCCCCCCGCGCCCACATTG
GGCACATAGGGATTGACGTTGATGGAGGAGGAGGGAGGGAGGAAGGACAA
GTGGCCTATCCCGAGGTCAATGACGATCCGGTATTGAGGAGGGGGCTTGA
TAGACTTAGGACACACGGATTTTCGATACAAGAGGTGGCGGCGTTAAGGT
CTTATTTTAATGCGCAGGTGCTAGCGTATGCGGCCCGCCAGCCGTCGAGG
GAGGGGGAGTCAGTAGAGGAGAGGAGGAATAGGATGGAGGAGGAGTGGAT
GGGCAGGCAGGGTGAGGGGAGTGAGTTTGCGTTGAACACGAATAGGGTGG
TGGCGACACGGGCGGTGTTTGCAGCAGCTAGGAGGGGAGGAGGGGGGGAG
GGAGGGGGGGGAGAGCTGGGCGCGGGGACGTCGAGGGAGTTTGTTTATGG
ATTTATAATGGGCTTTGCGCTCGGCTTCATCTCCCTGTTTTGGTTGTGGA
ACATTCCTCAGACGCATACCCAAAAGATGGGCATCATTTTAGGCGTCTCT
TGCTCCCTCGGATGGAACATAATTCGAAGGGCGGAGATGGAGGGAGGGAC
GGAGGGAGGAGCGGGAAGCGGAGGAGGGAATGAGTTGCCGTCGACCTTTG
GAAATGGGGGTGGAGGGGTGGACACGGCGGGTGCTGCTTCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGGGACAGGAGTACCGCCGGCGACAGTGGGCGT
GGGACAATGA
back to top
Synonyms
Publications