NO08G03740.1, NO08G03740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03740.1
Unique NameNO08G03740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1812
Alignment locationchr8:1053604..1055669 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1053604..1055669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03740.1 vs.
Match: XP_005854004.1 (hypothetical protein NGA_0481900, partial [Nannochloropsis gaditana CCMP526]; EKU22359.1 hypothetical protein NGA_0481900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 268.9 bits (686), Expect = 3.900e-68
Identity = 175/375 (46.67%), Postives = 215/375 (57.33%), Query Frame = 0 
Query:   72 PPAAVDLTQALKDAQRETIVVNGREFAGDPQGLQEEMHRLVNPLVVDVETATLLCQDILRASSRTASGGDSYVVASSLLVRRGNLLTPAAAESSLPITINIDPVVGSVHIIAENRYILHWDMFGEDKGEGGKEG--------------------------------------------GVGMQAQIQAQSWQYYLDGGGRGGRRGEGTLKKAVGLLNGFLSGQQQQQQQQQQKHGHQI-MGEEGEASSTSRSSSSCNRSPRGGEGGEEEGLECKKDGEGEEEGEKVILHTLLEVRLDVLSRSCRRRLKVWSEEVERAPPSFLVLGAGEGGVNGLFVLRGFHGRSPWYGKEGEEGEEGREGGRGGGRPSVAVVKDE 402
            PPAAVD+ QA KDAQRET+V+NGR F+GDP GLQ EMHRLV PLVVD ETATLLCQDILRASSRTASGGDSYV+ +SLLVR GNLLTPA A SS+PI+I+I    G V I A N Y+LHWDM  +  G  GKEG                                            G G Q  +  +    Y    G+G   G GT ++  G  +     +++Q     +K G Q  +GE+GE                 G GG  +G E  ++ E  E GE+++L TLLEVRLDVL+R+  R+++VW +E E+ P SFLVLGAGEG VNG + L GF GR+PWY KE EE EE       G R  V +V+DE
Sbjct:    1 PPAAVDVLQAWKDAQRETVVLNGRSFSGDPSGLQSEMHRLVAPLVVDSETATLLCQDILRASSRTASGGDSYVITTSLLVRPGNLLTPAMAASSIPISIHIGAEEGVVDIAAYNSYVLHWDMLEDGGGGAGKEGRKEARNPSEWDLPMWQSYIDGGREGTSTRKKMGGFLTQMLQASGGNGFQRHVHPRR---YFQDRGKGPGEGVGTREECTGTEDA--GKEKEQTGVGSKKEGDQDRLGEKGEGRGE-------------GGGGRVKGEE--EEEEEAEAGERIVLQTLLEVRLDVLTRNSSRKMRVWCQETEKVPGSFLVLGAGEGKVNGTYFLHGFQGRAPWYMKEEEEEEE-----EEGERARVVLVRDE 350
The following BLAST results are available for this feature:
BLAST of NO08G03740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854004.13.900e-6846.67hypothetical protein NGA_0481900, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03740NO08G03740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03740.1NO08G03740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03740.1.cds1NO08G03740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03740.1.cds2NO08G03740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03740.1.cds3NO08G03740.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03740.1 ID=NO08G03740.1|Name=NO08G03740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1812bp
ATGGACTACTCTGGGATGACTGACCCCCTTCCTCCTTCCAGCGACAGCAG
CAGCAGCAACAGTAACGGGGGAGGAGAGAACTTCCTCCTTCGTTGCCTCG
ACGGACAAGTCAAGCTTGCGCTACAAGCCCAGGTTGCCATTGCGAAGAAT
ATCGACAGCTTCCTCACCCTGCTTCATCTTTTCCATTCCTCTCTCATCGC
CATCCCCCTCCCTCCCCCAGCGGCGGTCGACTTGACCCAGGCGTTGAAAG
ATGCGCAAAGGGAGACGATTGTGGTTAATGGGAGGGAATTTGCGGGCGAC
CCGCAGGGGTTACAGGAAGAAATGCATCGACTGGTAAACCCCCTGGTAGT
GGACGTGGAAACTGCCACCCTCCTTTGTCAGGACATCCTGAGAGCCTCCT
CTCGAACGGCGTCGGGAGGCGATTCGTACGTCGTTGCCTCCTCCCTTCTA
GTCCGTCGTGGTAACCTGCTCACCCCTGCCGCCGCTGAATCCTCCCTCCC
CATCACAATAAACATCGACCCGGTAGTAGGCTCGGTTCATATCATCGCGG
AAAATAGGTACATCTTGCACTGGGATATGTTCGGGGAGGACAAGGGCGAG
GGTGGGAAGGAGGGAGGGGTGGGGATGCAGGCACAGATCCAGGCACAGAG
CTGGCAGTATTATCTGGATGGCGGAGGGAGGGGAGGAAGAAGAGGAGAAG
GGACATTGAAGAAAGCGGTGGGATTGTTGAACGGGTTTCTGAGCGGGCAG
CAGCAGCAGCAGCAGCAGCAGCAACAGAAACACGGGCACCAGATAATGGG
AGAAGAAGGAGAGGCGAGCAGCACCAGTAGAAGTAGCAGCAGTTGCAATC
GCTCACCCCGAGGAGGGGAGGGTGGGGAGGAGGAAGGATTGGAATGCAAA
AAAGACGGCGAAGGAGAGGAGGAGGGGGAGAAGGTCATTTTACACACACT
CCTAGAAGTGCGGTTGGATGTCTTGAGCCGGAGTTGTAGGAGGAGGTTGA
AGGTATGGAGTGAAGAGGTGGAGCGTGCTCCCCCTTCTTTCTTAGTGCTG
GGCGCTGGGGAGGGAGGCGTGAATGGACTTTTTGTCCTGAGGGGCTTTCA
CGGTAGAAGTCCCTGGTACGGGAAGGAGGGGGAGGAGGGGGAGGAAGGGA
GGGAAGGAGGAAGGGGGGGGGGAAGGCCATCGGTGGCGGTTGTGAAGGAT
GAGAGTGGGAGTGGCAGCAGTAACAGTAAAAAGGGCAGCAGCAGCAGCAG
TAGCAGTAGTGGTACTAGTGGCAGCAGCAGCAGTAAGAACAGCAAGGTCG
CTGGGAAAATCACCATCAGCAGCAGCAGCATCACCGAGCTATCTTCTTTG
CCCTTCTTCGCCTCTTCCGTCGCTATGGCTGCAGGGAAAGGGGAGGAGAA
CGAGGGCAGCAGCAGCGCTACCAACACCACCAGTACCACCAGCAGCAGCA
GCAACAGCAGTGCGCCTCCCTCTTCTTCCTCCTTCTACTCCCCTCCCTTT
TCATCCTCTTCCTGTAACGGCGGATGGTGCATTGTCTCGCTCCTGGAGAA
GAAGAAGAAAAAAGGCAAGCTTCTCTACTACCACCGACAGAAATCGGTAC
TCCCCCCTTTGGAGGGGTGGGAGGTTGTGGGGGAGGAAAAAGATAGGGAG
CGGGAAAGGGAGAGAGAAAAAGAGAGGGAAAAGGAGGGGGGGCGTGTTCT
CCCACCTGCTCCTACATTGATGCCTCACGTCGAAAAGGTGAAGATTGGAG
CAGGAGGAGGAAGGGGGGGAACGCTTCCCGCAGCAAGGATGGGGAGTAGC
CGTTGGGAGTGA
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protein sequence of NO08G03740.1

>NO08G03740.1-protein ID=NO08G03740.1-protein|Name=NO08G03740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=604bp
MDYSGMTDPLPPSSDSSSSNSNGGGENFLLRCLDGQVKLALQAQVAIAKN
IDSFLTLLHLFHSSLIAIPLPPPAAVDLTQALKDAQRETIVVNGREFAGD
PQGLQEEMHRLVNPLVVDVETATLLCQDILRASSRTASGGDSYVVASSLL
VRRGNLLTPAAAESSLPITINIDPVVGSVHIIAENRYILHWDMFGEDKGE
GGKEGGVGMQAQIQAQSWQYYLDGGGRGGRRGEGTLKKAVGLLNGFLSGQ
QQQQQQQQQKHGHQIMGEEGEASSTSRSSSSCNRSPRGGEGGEEEGLECK
KDGEGEEEGEKVILHTLLEVRLDVLSRSCRRRLKVWSEEVERAPPSFLVL
GAGEGGVNGLFVLRGFHGRSPWYGKEGEEGEEGREGGRGGGRPSVAVVKD
ESGSGSSNSKKGSSSSSSSSGTSGSSSSKNSKVAGKITISSSSITELSSL
PFFASSVAMAAGKGEENEGSSSATNTTSTTSSSSNSSAPPSSSSFYSPPF
SSSSCNGGWCIVSLLEKKKKKGKLLYYHRQKSVLPPLEGWEVVGEEKDRE
REREREKEREKEGGRVLPPAPTLMPHVEKVKIGAGGGRGGTLPAARMGSS
RWE*
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mRNA from alignment at chr8:1053604..1055669-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03740.1 ID=NO08G03740.1|Name=NO08G03740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2066bp|location=Sequence derived from alignment at chr8:1053604..1055669- (Nannochloropsis oceanica)
ATGGACTACTCTGGGATGACTGACCCCCTTCCTCCTTCCAGCGACAGCAG
CAGCAGCAACAGTAACGGGGGAGGAGAGAACTTCCTCCTTCGTTGCCTCG
ACGGACAAGTCAAGCTTGCGCTACAAGCCCAGGTTGCCATTGCGAAGAAT
ATCGACAGCTTCCTCACCCTGCTTCATCTTTTCCATTCCTCTCTCATCGC
CATCCCCCTCCCTCCCCCAGCGGCGGTCGACTTGACCCAGGCGTTGAAAG
ATGCGCAAAGGGAGACGATTGTGGTTAATGGGAGGGAATTTGCGGGCGAC
CCGCAGGGGTTACAGGAAGAAATGCATCGACTGGTAAACCCCCTGGTAGT
GGACGTGGAAACTGCCACCCTCCTTTGTCAGGACATCCTGAGAGCCTCCT
CTCGAACGGCGTCGGGAGGTAGGGTGATGTCCAATCTTCGTGTTTCCTCT
CTTCCACCCTCCGTGCCTCTGCCTCTGTCTTCCCTCTCCTCTCTCAATCC
TTCTTGTCGAGTGGCACGACACCGCCTGTCTTGTCCTCCCTCACCCTATT
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCGATTCGTACGTC
GTTGCCTCCTCCCTTCTAGTCCGTCGTGGTAACCTGCTCACCCCTGCCGC
CGCTGAATCCTCCCTCCCCATCACAATAAACATCGACCCGGTAGTAGGCT
CGGTTCATATCATCGCGGAAAATAGGTACATCTTGCACTGGGATATGTTC
GGGGAGGACAAGGGCGAGGGTGGGAAGGAGGGAGGGGTGGGGATGCAGGC
ACAGATCCAGGCACAGAGCTGGCAGTATTATCTGGATGGCGGAGGGAGGG
GAGGAAGAAGAGGAGAAGGGACATTGAAGAAAGCGGTGGGATTGTTGAAC
GGGTTTCTGAGCGGGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGAAACA
CGGGCACCAGATAATGGGAGAAGAAGGAGAGGCGAGCAGCACCAGTAGAA
GTAGCAGCAGTTGCAATCGCTCACCCCGAGGAGGGGAGGGTGGGGAGGAG
GAAGGATTGGAATGCAAAAAAGACGGCGAAGGAGAGGAGGAGGGGGAGAA
GGTCATTTTACACACACTCCTAGAAGTGCGGTTGGATGTCTTGAGCCGGA
GTTGTAGGAGGAGGTTGAAGGTATGGAGTGAAGAGGTGGAGCGTGCTCCC
CCTTCTTTCTTAGTGCTGGGCGCTGGGGAGGGAGGCGTGAATGGACTTTT
TGTCCTGAGGGGCTTTCACGGTAGAAGTCCCTGGTACGGGAAGGAGGGGG
AGGAGGGGGAGGAAGGGAGGGAAGGAGGAAGGGGGGGGGGAAGGCCATCG
GTGGCGGTTGTGAAGGATGAGAGGTGGCTTGCGTATAAATTGGGAGAAGG
AGGGGGGGGGGGGGATTGGCAAAGCTAACAGATTTGGTGTCTGGTCGTCC
CATAAGCAGTGGGAGTGGCAGCAGTAACAGTAAAAAGGGCAGCAGCAGCA
GCAGTAGCAGTAGTGGTACTAGTGGCAGCAGCAGCAGTAAGAACAGCAAG
GTCGCTGGGAAAATCACCATCAGCAGCAGCAGCATCACCGAGCTATCTTC
TTTGCCCTTCTTCGCCTCTTCCGTCGCTATGGCTGCAGGGAAAGGGGAGG
AGAACGAGGGCAGCAGCAGCGCTACCAACACCACCAGTACCACCAGCAGC
AGCAGCAACAGCAGTGCGCCTCCCTCTTCTTCCTCCTTCTACTCCCCTCC
CTTTTCATCCTCTTCCTGTAACGGCGGATGGTGCATTGTCTCGCTCCTGG
AGAAGAAGAAGAAAAAAGGCAAGCTTCTCTACTACCACCGACAGAAATCG
GTACTCCCCCCTTTGGAGGGGTGGGAGGTTGTGGGGGAGGAAAAAGATAG
GGAGCGGGAAAGGGAGAGAGAAAAAGAGAGGGAAAAGGAGGGGGGGCGTG
TTCTCCCACCTGCTCCTACATTGATGCCTCACGTCGAAAAGGTGAAGATT
GGAGCAGGAGGAGGAAGGGGGGGAACGCTTCCCGCAGCAAGGATGGGGAG
TAGCCGTTGGGAGTGA
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Coding sequence (CDS) from alignment at chr8:1053604..1055669-

>NO08G03740.1 ID=NO08G03740.1|Name=NO08G03740.1|organism=Nannochloropsis oceanica|type=CDS|length=1812bp|location=Sequence derived from alignment at chr8:1053604..1055669- (Nannochloropsis oceanica)
ATGGACTACTCTGGGATGACTGACCCCCTTCCTCCTTCCAGCGACAGCAG
CAGCAGCAACAGTAACGGGGGAGGAGAGAACTTCCTCCTTCGTTGCCTCG
ACGGACAAGTCAAGCTTGCGCTACAAGCCCAGGTTGCCATTGCGAAGAAT
ATCGACAGCTTCCTCACCCTGCTTCATCTTTTCCATTCCTCTCTCATCGC
CATCCCCCTCCCTCCCCCAGCGGCGGTCGACTTGACCCAGGCGTTGAAAG
ATGCGCAAAGGGAGACGATTGTGGTTAATGGGAGGGAATTTGCGGGCGAC
CCGCAGGGGTTACAGGAAGAAATGCATCGACTGGTAAACCCCCTGGTAGT
GGACGTGGAAACTGCCACCCTCCTTTGTCAGGACATCCTGAGAGCCTCCT
CTCGAACGGCGTCGGGAGGCGATTCGTACGTCGTTGCCTCCTCCCTTCTA
GTCCGTCGTGGTAACCTGCTCACCCCTGCCGCCGCTGAATCCTCCCTCCC
CATCACAATAAACATCGACCCGGTAGTAGGCTCGGTTCATATCATCGCGG
AAAATAGGTACATCTTGCACTGGGATATGTTCGGGGAGGACAAGGGCGAG
GGTGGGAAGGAGGGAGGGGTGGGGATGCAGGCACAGATCCAGGCACAGAG
CTGGCAGTATTATCTGGATGGCGGAGGGAGGGGAGGAAGAAGAGGAGAAG
GGACATTGAAGAAAGCGGTGGGATTGTTGAACGGGTTTCTGAGCGGGCAG
CAGCAGCAGCAGCAGCAGCAGCAACAGAAACACGGGCACCAGATAATGGG
AGAAGAAGGAGAGGCGAGCAGCACCAGTAGAAGTAGCAGCAGTTGCAATC
GCTCACCCCGAGGAGGGGAGGGTGGGGAGGAGGAAGGATTGGAATGCAAA
AAAGACGGCGAAGGAGAGGAGGAGGGGGAGAAGGTCATTTTACACACACT
CCTAGAAGTGCGGTTGGATGTCTTGAGCCGGAGTTGTAGGAGGAGGTTGA
AGGTATGGAGTGAAGAGGTGGAGCGTGCTCCCCCTTCTTTCTTAGTGCTG
GGCGCTGGGGAGGGAGGCGTGAATGGACTTTTTGTCCTGAGGGGCTTTCA
CGGTAGAAGTCCCTGGTACGGGAAGGAGGGGGAGGAGGGGGAGGAAGGGA
GGGAAGGAGGAAGGGGGGGGGGAAGGCCATCGGTGGCGGTTGTGAAGGAT
GAGAGTGGGAGTGGCAGCAGTAACAGTAAAAAGGGCAGCAGCAGCAGCAG
TAGCAGTAGTGGTACTAGTGGCAGCAGCAGCAGTAAGAACAGCAAGGTCG
CTGGGAAAATCACCATCAGCAGCAGCAGCATCACCGAGCTATCTTCTTTG
CCCTTCTTCGCCTCTTCCGTCGCTATGGCTGCAGGGAAAGGGGAGGAGAA
CGAGGGCAGCAGCAGCGCTACCAACACCACCAGTACCACCAGCAGCAGCA
GCAACAGCAGTGCGCCTCCCTCTTCTTCCTCCTTCTACTCCCCTCCCTTT
TCATCCTCTTCCTGTAACGGCGGATGGTGCATTGTCTCGCTCCTGGAGAA
GAAGAAGAAAAAAGGCAAGCTTCTCTACTACCACCGACAGAAATCGGTAC
TCCCCCCTTTGGAGGGGTGGGAGGTTGTGGGGGAGGAAAAAGATAGGGAG
CGGGAAAGGGAGAGAGAAAAAGAGAGGGAAAAGGAGGGGGGGCGTGTTCT
CCCACCTGCTCCTACATTGATGCCTCACGTCGAAAAGGTGAAGATTGGAG
CAGGAGGAGGAAGGGGGGGAACGCTTCCCGCAGCAAGGATGGGGAGTAGC
CGTTGGGAGTGA
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Synonyms
Publications