NO08G03720.1, NO08G03720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03720.1
Unique NameNO08G03720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1442
Alignment locationchr8:1049495..1051330 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1049495..1051330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03720.1 vs.
Match: XP_005854001.1 (ribose 5-phosphate isomerase A [Nannochloropsis gaditana CCMP526]; EKU22356.1 ribose 5-phosphate isomerase A [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 504.6 bits (1298), Expect = 2.000e-139
Identity = 260/282 (92.20%), Postives = 270/282 (95.74%), Query Frame = 0 
Query:    1 MSRQKTLFSVMAMVTVGASAFILPVRQPLHGPALCTRRASTTTARFAVSQDELKKQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGQKLKAGELKDIVAIPTSIRTKEQAEGLGIPLVTLDTHSVLDVAIDGADEVDPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILGLPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTAPIADVMAVAGALEKVVGVVEHGFFLDMTTAVIVAGKTGIDVINKK 283
            M+RQK +FSVMAMVTVGASAFILP++QPL+GPALC +RAS+T ARFAVSQDELKKQVGYKSVDDYV SGMVVGLGTGSTAAFAVERLG KLKAGELKDIVAIPTSIRTKEQAE LG+PLVTLD+HSVLDVAIDGADEVDPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTIL LPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYT PIADV AVA ALE VVGVVEHGFFLDMTTAVIVAGK GI+VINKK
Sbjct:    1 MARQKNIFSVMAMVTVGASAFILPLKQPLNGPALCVQRASST-ARFAVSQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKAGELKDIVAIPTSIRTKEQAESLGVPLVTLDSHSVLDVAIDGADEVDPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 281
The following BLAST results are available for this feature:
BLAST of NO08G03720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854001.12.000e-13992.20ribose 5-phosphate isomerase A [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03720NO08G03720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03720.1NO08G03720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03720.1.cds1NO08G03720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03720.1.cds2NO08G03720.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03720.1.cds3NO08G03720.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03720.1 ID=NO08G03720.1|Name=NO08G03720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1442bp
AGAAGCATCCTGCGCGCAAGGATTGGATCCAAAACTAACGGGCTTGGACC
CCTCTTTGTGCGGCGGCTTGTTTATGTTTGTGTGATGCCTTGTGTAGTGC
GGGTGAGAAAAAGCATGCCCGAACCGCAAACGTGGATATGGATTTGATGT
TTACCATCAACTCATCCCCGGGTCACACATCTCTCACCTTCCGCTTCTCT
CCTTCCCTCACCACCTCAACAAAACCCTATGGCTAGTCCTTCACCCTACA
CATAAAAATGAGCCGCCAAAAGACTCTCTTTTCTGTCATGGCCATGGTCA
CCGTGGGTGCCTCTGCGTTTATCCTTCCTGTCCGCCAGCCCCTGCACGGC
CCGGCTCTGTGCACTCGCCGTGCCTCGACCACCACCGCGCGCTTCGCCGT
GAGCCAAGACGAGCTCAAGAAGCAAGTGGGCTACAAGTCCGTGGATGACT
ACGTGACCAGCGGCATGGTCGTGGGCCTGGGCACCGGTTCCACTGCCGCC
TTTGCTGTGGAGCGCCTCGGGCAGAAGCTCAAGGCTGGCGAGCTTAAGGA
CATCGTTGCCATCCCTACTTCCATCCGCACCAAGGAGCAAGCGGAAGGCC
TGGGAATCCCCCTGGTGACGCTTGACACTCACTCTGTGTTGGATGTGGCC
ATTGACGGTGCCGATGAGGTGGACCCGGCTCTGAACTTGGTGAAGGGACG
AGGGGGTGCTTTGCTGCGTGAGAAGATGGTGGAGGTGTGCGCTAAGAAGT
TCATCGTCATTGTGGACGACAGCAAGATGGTGCCTGGCCTGGGAGTCACT
GGTGCGATGCCCGTGGAGATCACCCCCTTCTGCCATGAGCACACTCAACG
GACGATCCTAGGCTTGCCAGGGGTGAAGGGCGCGGCGACGGGGAAGCTTC
GCATGGATGGAGACAAGCCCTACGTGACTGACAATGACAACTACATCGTG
GATTTGTACTACACCGCGCCAATTGCGGACGTGATGGCCGTTGCGGGGGC
GCTGGAGAAGGTGGTAGGTGTGGTGGAGCACGGTTTTTTCTTAGACATGA
CCACGGCGGTGATCGTGGCTGGGAAGACGGGCATCGACGTCATCAATAAG
AAGTAGAGGAGAGAGGAAAGAGGGACTATGTGGAGGTGTTTGCCTGCACG
CATGTTGACCCGCAGCCGCTTGGAGGCTTAAGCAAGGCATGGAGGGGAGG
GATGGGGGAGTGCGAAAGGAGAGGCGCGTTTTTGGGATTGGAAGGAAGAG
TGAGAGAGTGGACTGCTCGACCTCACTGCACACAAATGAGGGAGGGGGGA
GGGAGGGAGGGAGGAAGGAAGGGAAGGACACAGTCCTTGCTCAGACACAT
GACAGAGCCCCCCCAAAAGAAGGAAGGAGCAGATAAATCGGTATGTCAGT
CGTGCAGCCCTGAGAAAGCCGACGCCCTTTCTATTTACACGA
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protein sequence of NO08G03720.1

>NO08G03720.1-protein ID=NO08G03720.1-protein|Name=NO08G03720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MSRQKTLFSVMAMVTVGASAFILPVRQPLHGPALCTRRASTTTARFAVSQ
DELKKQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGQKLKAGELKDIV
AIPTSIRTKEQAEGLGIPLVTLDTHSVLDVAIDGADEVDPALNLVKGRGG
ALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTI
LGLPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTAPIADVMAVAGALE
KVVGVVEHGFFLDMTTAVIVAGKTGIDVINKK*
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mRNA from alignment at chr8:1049495..1051330-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03720.1 ID=NO08G03720.1|Name=NO08G03720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1836bp|location=Sequence derived from alignment at chr8:1049495..1051330- (Nannochloropsis oceanica)
AGAAGCATCCTGCGCGCAAGGATTGGATCCAAAACTAACGGGCTTGGACC
CCTCTTTGTGCGGCGGCTTGTTTATGTTTGTGTGATGCCTTGTGTAGTGC
GGGTGAGAAAAAGCATGCCCGAACCGCAAACGTGGATATGGATTTGATGT
TTACCATCAACTCATCCCCGGGTCACACATCTCTCACCTTCCGCTTCTCT
CCTTCCCTCACCACCTCAACAAAACCCTATGGCTAGTCCTTCACCCTACA
CATAAAAATGAGCCGCCAAAAGACTCTCTTTTCTGTCATGGCCATGGTCA
CCGTGGGTGCCTCTGCGTTTATCCTTCCTGTCCGCCAGCCCCTGCACGGC
CCGGCTCTGTGCACTCGCCGTGCCTCGACCACCACCGCGCGCTTCGCCGT
GAGCCAAGACGAGCTCAAGAAGCAAGTGGGCTACAAGTCCGTGGATGACT
ACGTGACCAGCGGCATGGTCGTGGGCCTGGGCACCGGTTCCACTGCCGCC
TTTGCTGGTATGTGCGTGCGGAGGGCATGGGTTGTGGGGACGGTGGAGTG
CAGGGAGGTCATACGTCAAGGTTCCTCGGATCAAACTTCCTACCCTAGCC
CCAGCCCCTATTGAAAGCTTCTGCTTTCCCTTACTTGTACATTTTTCCTT
TACCCATATTGATGATGGTGTTCAGTTGTGATGATAAACACCCGAACAAT
AAGCACCCTTCTCATTTCGCCCTTTTTCCCTCCCCCCAGTGGAGCGCCTC
GGGCAGAAGCTCAAGGCTGGCGAGCTTAAGGACATCGTTGCCATCCCTAC
TTCCATCCGCACCAAGGAGCAAGCGGAAGGCCTGGGAATCCCCCTGGTGA
CGCTTGACACTCACTCTGTGTTGGATGTGGCCATTGACGGTGCCGATGAG
GTGGACCCGGCTCTGAACTTGGTGAAGGGACGAGGGGGTGCTTTGCTGCG
TGAGAAGATGGTGGAGGTACGTGTGCCAGGAAGGAGAGGAAGGGTAGAGG
GGAGGAGCGAGGAGAATTGTAAAAATGTGTACTACGCGTCATTCTCTTAT
GACATGAGACGACCAACCTGACCTCTGCCTTTCTCCCTCCCATCTTTCCT
CCCTTCCTCCCTTCTTCCCTCCTAAAAGGTGTGCGCTAAGAAGTTCATCG
TCATTGTGGACGACAGCAAGATGGTGCCTGGCCTGGGAGTCACTGGTGCG
ATGCCCGTGGAGATCACCCCCTTCTGCCATGAGCACACTCAACGGACGAT
CCTAGGCTTGCCAGGGGTGAAGGGCGCGGCGACGGGGAAGCTTCGCATGG
ATGGAGACAAGCCCTACGTGACTGACAATGACAACTACATCGTGGATTTG
TACTACACCGCGCCAATTGCGGACGTGATGGCCGTTGCGGGGGCGCTGGA
GAAGGTGGTAGGTGTGGTGGAGCACGGTTTTTTCTTAGACATGACCACGG
CGGTGATCGTGGCTGGGAAGACGGGCATCGACGTCATCAATAAGAAGTAG
AGGAGAGAGGAAAGAGGGACTATGTGGAGGTGTTTGCCTGCACGCATGTT
GACCCGCAGCCGCTTGGAGGCTTAAGCAAGGCATGGAGGGGAGGGATGGG
GGAGTGCGAAAGGAGAGGCGCGTTTTTGGGATTGGAAGGAAGAGTGAGAG
AGTGGACTGCTCGACCTCACTGCACACAAATGAGGGAGGGGGGAGGGAGG
GAGGGAGGAAGGAAGGGAAGGACACAGTCCTTGCTCAGACACATGACAGA
GCCCCCCCAAAAGAAGGAAGGAGCAGATAAATCGGTATGTCAGTCGTGCA
GCCCTGAGAAAGCCGACGCCCTTTCTATTTACACGA
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Coding sequence (CDS) from alignment at chr8:1049495..1051330-

>NO08G03720.1 ID=NO08G03720.1|Name=NO08G03720.1|organism=Nannochloropsis oceanica|type=CDS|length=849bp|location=Sequence derived from alignment at chr8:1049495..1051330- (Nannochloropsis oceanica)
ATGAGCCGCCAAAAGACTCTCTTTTCTGTCATGGCCATGGTCACCGTGGG
TGCCTCTGCGTTTATCCTTCCTGTCCGCCAGCCCCTGCACGGCCCGGCTC
TGTGCACTCGCCGTGCCTCGACCACCACCGCGCGCTTCGCCGTGAGCCAA
GACGAGCTCAAGAAGCAAGTGGGCTACAAGTCCGTGGATGACTACGTGAC
CAGCGGCATGGTCGTGGGCCTGGGCACCGGTTCCACTGCCGCCTTTGCTG
TGGAGCGCCTCGGGCAGAAGCTCAAGGCTGGCGAGCTTAAGGACATCGTT
GCCATCCCTACTTCCATCCGCACCAAGGAGCAAGCGGAAGGCCTGGGAAT
CCCCCTGGTGACGCTTGACACTCACTCTGTGTTGGATGTGGCCATTGACG
GTGCCGATGAGGTGGACCCGGCTCTGAACTTGGTGAAGGGACGAGGGGGT
GCTTTGCTGCGTGAGAAGATGGTGGAGGTGTGCGCTAAGAAGTTCATCGT
CATTGTGGACGACAGCAAGATGGTGCCTGGCCTGGGAGTCACTGGTGCGA
TGCCCGTGGAGATCACCCCCTTCTGCCATGAGCACACTCAACGGACGATC
CTAGGCTTGCCAGGGGTGAAGGGCGCGGCGACGGGGAAGCTTCGCATGGA
TGGAGACAAGCCCTACGTGACTGACAATGACAACTACATCGTGGATTTGT
ACTACACCGCGCCAATTGCGGACGTGATGGCCGTTGCGGGGGCGCTGGAG
AAGGTGGTAGGTGTGGTGGAGCACGGTTTTTTCTTAGACATGACCACGGC
GGTGATCGTGGCTGGGAAGACGGGCATCGACGTCATCAATAAGAAGTAG
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Synonyms
Publications