NO08G03700.1, NO08G03700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03700.1
Unique NameNO08G03700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1564
Alignment locationchr8:1047677..1049494 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1047677..1049494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03700.1 vs.
Match: EWM26803.1 (Complex 1 LYR protein [Nannochloropsis gaditana])

HSP 1 Score: 174.9 bits (442), Expect = 2.400e-40
Identity = 91/131 (69.47%), Postives = 109/131 (83.21%), Query Frame = 0 
Query:   53 PPAPVATSAVTTAVLQLYRRIIKNAKVFPSKGRDRMVKEIREEFRVNAKETDPDKIRNHRSMAIKGLSQLQAYTGLVDTDMDWSVTMEPAPLGGLSEEKVEEKLKRVSKATVSSGREEKGVGGKGLEEEGK 184
            P   V  SA + AVL LYRRIIKNAKVFPSKGRDRM+KEIREEFR+NAKETDP+K+++HRSMAI+GLSQLQAYTGL D+DMDWSVTME APLGGLSEEKVEEKL+RV +  ++SG++     G+  ++  K
Sbjct:   32 PHLSVPASATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLGGLSEEKVEEKLRRVPQMAMTSGKDVADETGQENDDRRK 162
The following BLAST results are available for this feature:
BLAST of NO08G03700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26803.12.400e-4069.47Complex 1 LYR protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03700NO08G03700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03700.1NO08G03700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03700.1.cds1NO08G03700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03700.1.cds2NO08G03700.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03700.1 ID=NO08G03700.1|Name=NO08G03700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1564bp
GTCCCCATCGTATGCACTTCTTTTAAACTCCAGACTTTTTTTCGGAGCTA
CGGCTGCGATTCATCTCAGAACAGCAGCACCAGTTTCCAGACCCTCATCT
TCTTCCCATTTATTCTCTACGACCTCATCTCGTAGCCTGCCTTTTGCGTG
TTTCCCCTCCTTACCCCTCCCCTCGCTCTCCTCCGACCTCTTCTGCTGGA
TGCCAGCAACCACCCCTGCAAGCACAGGCCGTGACATTTCAGACGCATTG
TCCGGCATCTCACTACTGCTGATTTCGTTCACATTCTCTCCTATTTTTGT
GAATGTTGTGGTCGCCGCTGCTCCTGCTGCTGTTGCTACTAATGGTGGTA
GTGATACTGGTGACGTGGGCGACGCGTGCGTAAATGTCGGCGTGGCAATA
TTGCGACGCTCTACACCAAAGTCCAACTCCTCCTCGTACCCATACAAATC
ATCAAAAATGTCCTCTATCATGTCATGATCGTCATCTTCTTCCTCCTCCC
TATCCTCGAAGTGACGGCTGCGTCGTCCTCGCCGTCGTCGGGGCAACTCC
GTATACTGGACTTCCAGTTCTTGTCCTGTCCCTCCACTTTCTCCTTCTCC
TGCTCTTCTTCTTAGATACCGATGCAAGGCCCGAACCAAGTAGACAAAAA
AGAGGGCCAACAAGGCACCCGCAACCGTTGAGAGGAAGAGAGGCAAGGTC
CCATGCCCCTCAATAATGCGGTCGAGCATGGGAGACGGGGCATTCGGAAC
AGCCTCCATTTAGATGTGTGCGGCAAATCTTGGCCAGGGAGTCGACCTAG
GGATACAGACGTAGCCTGCACCCCCTTCTTCTCGTCGCTACCTTCGCTGT
AGCGGAGTTGTCCCTGTGATGGAGCGTGGGAGTACAGGGAGGATGCTTGA
GACGGGAGAGGTAGGACGGTGATTTTTTTTGCGCTTCAGCGACGCTTCCG
TTGCTGACATTTCCATGACTCATGAGCCTACACACTGCTGCACTTATGGT
TATATTCACTCCTTGTAATGCTACACAAAGGCAGGACCGGTACGCCAACC
GAACCCCGCAGGGAAAACCTCCTCACCTCCCGCAAACAGCAAGCAAACCC
TTGCTTTCTTTCCATCGTACAATGCCACCTCCTGCCCCTGTCGCCACCTC
GGCAGTCACCACCGCCGTCCTCCAGCTGTATCGTCGCATTATCAAGAATG
CCAAGGTCTTTCCCAGCAAAGGGCGTGACCGCATGGTCAAGGAAATCCGA
GAGGAGTTCCGCGTCAACGCCAAAGAAACTGATCCCGATAAGATCCGGAA
CCATCGCAGCATGGCCATCAAAGGCCTTAGTCAGCTACAAGCCTACACAG
GATTGGTGGACACAGACATGGACTGGTCCGTTACCATGGAGCCCGCACCG
TTAGGAGGGCTATCGGAGGAAAAGGTAGAGGAGAAGCTAAAGCGTGTGTC
TAAGGCGACAGTCAGCTCCGGGAGAGAAGAGAAGGGGGTGGGTGGGAAGG
GGCTGGAGGAAGAGGGAAAGAGATGACGAGGGGGGGAAGCAAAGAAGATG
GGAGATTGAAGAGA
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protein sequence of NO08G03700.1

>NO08G03700.1-protein ID=NO08G03700.1-protein|Name=NO08G03700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MSLHTAALMVIFTPCNATQRQDRYANRTPQGKPPHLPQTASKPLLSFHRT
MPPPAPVATSAVTTAVLQLYRRIIKNAKVFPSKGRDRMVKEIREEFRVNA
KETDPDKIRNHRSMAIKGLSQLQAYTGLVDTDMDWSVTMEPAPLGGLSEE
KVEEKLKRVSKATVSSGREEKGVGGKGLEEEGKR*
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mRNA from alignment at chr8:1047677..1049494+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03700.1 ID=NO08G03700.1|Name=NO08G03700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1818bp|location=Sequence derived from alignment at chr8:1047677..1049494+ (Nannochloropsis oceanica)
GTCCCCATCGTATGCACTTCTTTTAAACTCCAGACTTTTTTTCGGAGCTA
CGGCTGCGATTCATCTCAGAACAGCAGCACCAGTTTCCAGACCCTCATCT
TCTTCCCATTTATTCTCTACGACCTCATCTCGTAGCCTGCCTTTTGCGTG
TTTCCCCTCCTTACCCCTCCCCTCGCTCTCCTCCGACCTCTTCTGCTGGA
TGCCAGCAACCACCCCTGCAAGCACAGGCCGTGACATTTCAGACGCATTG
TCCGGCATCTCACTACTGCTGATTTCGTTCACATTCTCTCCTATTTTTGT
GAATGTTGTGGTCGCCGCTGCTCCTGCTGCTGTTGCTACTAATGGTGGTA
GTGATACTGGTGACGTGGGCGACGCGTGCGTAAATGTCGGCGTGGCAATA
TTGCGACGCTCTACACCAAAGTCCAACTCCTCCTCGTACCCATACAAATC
ATCAAAAATGTCCTCTATCATGTCATGATCGTCATCTTCTTCCTCCTCCC
TATCCTCGAAGTGACGGCTGCGTCGTCCTCGCCGTCGTCGGGGCAACTCC
GTATACTGGACTTCCAGTTCTTGTCCTGTCCCTCCACTTTCTCCTTCTCC
TGCTCTTCTTCTTAGATACCGATGCAAGGCCCGAACCAAGTAGACAAAAA
AGAGGGCCAACAAGGCACCCGCAACCGTTGAGAGGAAGAGAGGCAAGGTC
CCATGCCCCTCAATAATGCGGTCGAGCATGGGAGACGGGGCATTCGGAAC
AGCCTCCATTTAGATGTGTGCGGCAAATCTTGGCCAGGGAGTCGACCTAG
GGATACAGACGTAGCCTGCACCCCCTTCTTCTCGTCGCTACCTTCGCTGT
AGCGGAGTTGTCCCTGTGATGGAGCGTGGGAGTACAGGGAGGATGCTTGA
GACGGGAGAGGTAGGACGGTGATTTTTTTTGCGCTTCAGCGACGCTTCCG
TTGCTGACATTTCCATGACTCATGAGCCTACACACTGCTGCACTTATGGT
TATATTCACTCCTTGTAATGCTACACAAAGGCAGGACCGGTACGCCAACC
GAACCCCGCAGGGAAAACCTCCTCACCTCCCGCAAACAGCAAGCAAACCC
TTGCTTTCTTTCCATCGTACAATGCCACCTCCTGCCCCTGTCGCCACCTC
GGCAGTCACCACCGCCGTCCTCCAGCTGTATCGTCGCATTATCAAGAATG
CCAAGGTCTTTCCCAGCAAAGGGCGTGACCGCATGGTCAAGGAAATCCGA
GAGGGTAAGTAATTATGTTCGGATGGCTATGCACAGGGGCGACTGATAGT
AATACGAAATAGTGGCGTTACATCTTGCATGCTTGCCTTGTTTCTCCTTC
TTATAGCCTGTAAAGATTGTGCCCCATGAGTTCCCTTGGCACTTCGCTGG
CTTAAGCTCTCTCCTTTCTGATGCCTCACCCACCCGTTCCCGAAGCTTCA
ATTCGGCCCTCCTCAATCCATTGGCCACGCCTCATACACATCCCACCTCT
ACAAACAGAGTTCCGCGTCAACGCCAAAGAAACTGATCCCGATAAGATCC
GGAACCATCGCAGCATGGCCATCAAAGGCCTTAGTCAGCTACAAGCCTAC
ACAGGATTGGTGGACACAGACATGGACTGGTCCGTTACCATGGAGCCCGC
ACCGTTAGGAGGGCTATCGGAGGAAAAGGTAGAGGAGAAGCTAAAGCGTG
TGTCTAAGGCGACAGTCAGCTCCGGGAGAGAAGAGAAGGGGGTGGGTGGG
AAGGGGCTGGAGGAAGAGGGAAAGAGATGACGAGGGGGGGAAGCAAAGAA
GATGGGAGATTGAAGAGA
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Coding sequence (CDS) from alignment at chr8:1047677..1049494+

>NO08G03700.1 ID=NO08G03700.1|Name=NO08G03700.1|organism=Nannochloropsis oceanica|type=CDS|length=555bp|location=Sequence derived from alignment at chr8:1047677..1049494+ (Nannochloropsis oceanica)
ATGAGCCTACACACTGCTGCACTTATGGTTATATTCACTCCTTGTAATGC
TACACAAAGGCAGGACCGGTACGCCAACCGAACCCCGCAGGGAAAACCTC
CTCACCTCCCGCAAACAGCAAGCAAACCCTTGCTTTCTTTCCATCGTACA
ATGCCACCTCCTGCCCCTGTCGCCACCTCGGCAGTCACCACCGCCGTCCT
CCAGCTGTATCGTCGCATTATCAAGAATGCCAAGGTCTTTCCCAGCAAAG
GGCGTGACCGCATGGTCAAGGAAATCCGAGAGGAGTTCCGCGTCAACGCC
AAAGAAACTGATCCCGATAAGATCCGGAACCATCGCAGCATGGCCATCAA
AGGCCTTAGTCAGCTACAAGCCTACACAGGATTGGTGGACACAGACATGG
ACTGGTCCGTTACCATGGAGCCCGCACCGTTAGGAGGGCTATCGGAGGAA
AAGGTAGAGGAGAAGCTAAAGCGTGTGTCTAAGGCGACAGTCAGCTCCGG
GAGAGAAGAGAAGGGGGTGGGTGGGAAGGGGCTGGAGGAAGAGGGAAAGA
GATGA
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Synonyms
Publications