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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:1046260..1047629 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G03690.1 vs.
Match: XP_005855052.1 (hypothetical protein NGA_2012310, partial [Nannochloropsis gaditana CCMP526]; EKU21305.1 hypothetical protein NGA_2012310, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 328.6 bits (841), Expect = 3.000e-86 Identity = 184/349 (52.72%), Postives = 232/349 (66.48%), Query Frame = 0
Query: 9 DPNAYHVFPGDEVGGGLGKDKDVNLEPSAAEREKEAYLHPCCQKELESTRARTKLMSKLRAVDITRQAMDRRKGVVGLSE--EQHQHEHGAGCCALMADYPALARLRVTRDGGVGTRQDYDDMERRRSSSGISSREVVASYEEGEDEEDSEEDGDDDILRELEAGDDGGFLEIRRAELMRQAQEAAEIQYLGIGLHTELPPNRVLDLVYLRCCHLVVHCYDPYGETSAVLDLQLEGLAKMYPGTRFVRTPFG---------GGEG---LRQALRVPAPGSGSGYTKSVLLSLRDGSLVDSCYDYGRRFGEGREGRREGGEVYLEAVEQWLRHCQVLERERMDVERARKM 344
DPNA+H PGD K + E S ER KE YLHPCCQKELE+TRARTKLM+KL A DITR AM+RR+ V G + +QHQH HG GCC+L DYPAL+ LR + GG + + S + ++ E ++ ++ EE+ DD+ LRELE GDDGGF EIRRAE++R+A E AE+Q LG+GLHT + P R L +V C LV+HCYDPY SA LDL+LE LA YPGTRF+RT FG GG+G LR++LRVPAP Y KSV+L++++G LVDSCYD+GRRFG+ +EGR VY EAVEQWL+HC+VLER + V+ AR+M
Sbjct: 10 DPNAFHQLPGDYASEN--KHDENGTEVSVVERVKEEYLHPCCQKELEATRARTKLMTKLTAADITRHAMERRRNVFGPEQANDQHQHVHGTGCCSLTVDYPALSDLREKQGGGSRAME----VGMPVGSGDGDEQALLRQAEREQNGDEEEEESDDEWLRELEDGDDGGFQEIRRAEMVRRALEQAELQALGVGLHTYVAPARALKIVQRASCPLVMHCYDPYSPISAALDLELEVLAARYPGTRFLRTAFGANGGTRDGRGGQGSKVLRESLRVPAPAPTGEYRKSVVLAVKEGRLVDSCYDFGRRFGDVKEGR-----VYGEAVEQWLQHCRVLERASVCVDDARRM 347
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G03690.1 ID=NO08G03690.1|Name=NO08G03690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1370bp ATGGAAATCCCTTCGCAAATGGCGGACCCAAATGCCTACCACGTCTTTCC AGGAGACGAAGTTGGTGGCGGCTTGGGAAAAGACAAGGATGTAAACCTGG AACCTTCGGCAGCGGAGCGAGAAAAAGAAGCATACCTCCATCCCTGCTGC CAAAAGGAGCTAGAGTCTACGCGGGCCCGCACCAAACTTATGTCGAAGTT GCGTGCTGTTGACATCACTCGGCAAGCGATGGATCGGCGGAAGGGTGTGG TGGGGTTGAGCGAGGAGCAGCACCAGCATGAGCATGGAGCAGGGTGTTGT GCGTTGATGGCGGACTACCCGGCCTTGGCTCGCTTGCGGGTAACGAGGGA CGGAGGGGTAGGAACAAGGCAAGACTATGATGACATGGAAAGAAGGAGGA GCAGCAGCGGCATCAGCAGCAGAGAGGTGGTGGCATCGTATGAAGAGGGC GAGGACGAGGAGGACTCCGAGGAAGATGGCGACGACGATATTTTGCGTGA ATTGGAGGCCGGGGACGATGGAGGCTTTCTCGAAATTCGTCGAGCGGAAT TGATGCGCCAGGCTCAAGAAGCGGCTGAAATCCAGTACTTGGGTATCGGG CTGCACACTGAATTACCCCCCAATCGAGTGCTTGACCTTGTATACCTCCG GTGTTGTCATCTGGTGGTTCATTGCTATGACCCCTATGGAGAGACGAGTG CCGTGTTGGACTTACAATTGGAAGGGTTGGCAAAGATGTATCCAGGGACG CGGTTTGTTCGGACGCCCTTTGGGGGAGGAGAAGGCTTGAGGCAAGCGTT ACGAGTGCCTGCCCCGGGGAGTGGGAGTGGTTACACCAAGTCCGTATTGT TGAGCTTGAGGGATGGGTCTCTGGTTGATAGTTGCTATGATTATGGGAGA AGGTTTGGGGAGGGGAGGGAGGGAAGGAGGGAGGGAGGGGAGGTGTACTT GGAGGCGGTGGAGCAGTGGTTGAGGCATTGCCAAGTGCTGGAGAGGGAGA GGATGGATGTGGAGAGGGCTCGGAAAATGAGGTTGTTGTTGAAAGCGCAG ATGGGGAGAAAGGGGGGGAAGGGAGGGAGGACAGGGGTGGGGATGCGGAT GGCGATTACGGCGGGAGGGCAGGAGAGAGATGAGGAGGTGGAGGATGGGG GGGAGGACGAGGACGAGGCCGAGTTTTATGAGTGTGGATTGGAAGGGTGC TACAAGCCCTTCATTCACTCACATGTGGGGATGGAGGGTATACAAATGCC GAAAGAATTTGGCGCGATTGGGGAGCATTGACGTAGGACAAGCAACTCCC ACAACAACACAAAAGAAGAGGATCTCAGAGCAGTAACGAGTAGGAAATAA GAATAAAAATATCACACAGT back to topprotein sequence of NO08G03690.1 >NO08G03690.1-protein ID=NO08G03690.1-protein|Name=NO08G03690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=427bp MEIPSQMADPNAYHVFPGDEVGGGLGKDKDVNLEPSAAEREKEAYLHPCC QKELESTRARTKLMSKLRAVDITRQAMDRRKGVVGLSEEQHQHEHGAGCC ALMADYPALARLRVTRDGGVGTRQDYDDMERRRSSSGISSREVVASYEEG EDEEDSEEDGDDDILRELEAGDDGGFLEIRRAELMRQAQEAAEIQYLGIG LHTELPPNRVLDLVYLRCCHLVVHCYDPYGETSAVLDLQLEGLAKMYPGT RFVRTPFGGGEGLRQALRVPAPGSGSGYTKSVLLSLRDGSLVDSCYDYGR RFGEGREGRREGGEVYLEAVEQWLRHCQVLERERMDVERARKMRLLLKAQ MGRKGGKGGRTGVGMRMAITAGGQERDEEVEDGGEDEDEAEFYECGLEGC YKPFIHSHVGMEGIQMPKEFGAIGEH* back to topmRNA from alignment at chr8:1046260..1047629+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G03690.1 ID=NO08G03690.1|Name=NO08G03690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1370bp|location=Sequence derived from alignment at chr8:1046260..1047629+ (Nannochloropsis oceanica) ATGGAAATCCCTTCGCAAATGGCGGACCCAAATGCCTACCACGTCTTTCC
AGGAGACGAAGTTGGTGGCGGCTTGGGAAAAGACAAGGATGTAAACCTGG
AACCTTCGGCAGCGGAGCGAGAAAAAGAAGCATACCTCCATCCCTGCTGC
CAAAAGGAGCTAGAGTCTACGCGGGCCCGCACCAAACTTATGTCGAAGTT
GCGTGCTGTTGACATCACTCGGCAAGCGATGGATCGGCGGAAGGGTGTGG
TGGGGTTGAGCGAGGAGCAGCACCAGCATGAGCATGGAGCAGGGTGTTGT
GCGTTGATGGCGGACTACCCGGCCTTGGCTCGCTTGCGGGTAACGAGGGA
CGGAGGGGTAGGAACAAGGCAAGACTATGATGACATGGAAAGAAGGAGGA
GCAGCAGCGGCATCAGCAGCAGAGAGGTGGTGGCATCGTATGAAGAGGGC
GAGGACGAGGAGGACTCCGAGGAAGATGGCGACGACGATATTTTGCGTGA
ATTGGAGGCCGGGGACGATGGAGGCTTTCTCGAAATTCGTCGAGCGGAAT
TGATGCGCCAGGCTCAAGAAGCGGCTGAAATCCAGTACTTGGGTATCGGG
CTGCACACTGAATTACCCCCCAATCGAGTGCTTGACCTTGTATACCTCCG
GTGTTGTCATCTGGTGGTTCATTGCTATGACCCCTATGGAGAGACGAGTG
CCGTGTTGGACTTACAATTGGAAGGGTTGGCAAAGATGTATCCAGGGACG
CGGTTTGTTCGGACGCCCTTTGGGGGAGGAGAAGGCTTGAGGCAAGCGTT
ACGAGTGCCTGCCCCGGGGAGTGGGAGTGGTTACACCAAGTCCGTATTGT
TGAGCTTGAGGGATGGGTCTCTGGTTGATAGTTGCTATGATTATGGGAGA
AGGTTTGGGGAGGGGAGGGAGGGAAGGAGGGAGGGAGGGGAGGTGTACTT
GGAGGCGGTGGAGCAGTGGTTGAGGCATTGCCAAGTGCTGGAGAGGGAGA
GGATGGATGTGGAGAGGGCTCGGAAAATGAGGTTGTTGTTGAAAGCGCAG
ATGGGGAGAAAGGGGGGGAAGGGAGGGAGGACAGGGGTGGGGATGCGGAT
GGCGATTACGGCGGGAGGGCAGGAGAGAGATGAGGAGGTGGAGGATGGGG
GGGAGGACGAGGACGAGGCCGAGTTTTATGAGTGTGGATTGGAAGGGTGC
TACAAGCCCTTCATTCACTCACATGTGGGGATGGAGGGTATACAAATGCC
GAAAGAATTTGGCGCGATTGGGGAGCATTGACGTAGGACAAGCAACTCCC
ACAACAACACAAAAGAAGAGGATCTCAGAGCAGTAACGAGTAGGAAATAA
GAATAAAAATATCACACAGT back to topCoding sequence (CDS) from alignment at chr8:1046260..1047629+ >NO08G03690.1 ID=NO08G03690.1|Name=NO08G03690.1|organism=Nannochloropsis oceanica|type=CDS|length=1281bp|location=Sequence derived from alignment at chr8:1046260..1047629+ (Nannochloropsis oceanica) ATGGAAATCCCTTCGCAAATGGCGGACCCAAATGCCTACCACGTCTTTCC AGGAGACGAAGTTGGTGGCGGCTTGGGAAAAGACAAGGATGTAAACCTGG AACCTTCGGCAGCGGAGCGAGAAAAAGAAGCATACCTCCATCCCTGCTGC CAAAAGGAGCTAGAGTCTACGCGGGCCCGCACCAAACTTATGTCGAAGTT GCGTGCTGTTGACATCACTCGGCAAGCGATGGATCGGCGGAAGGGTGTGG TGGGGTTGAGCGAGGAGCAGCACCAGCATGAGCATGGAGCAGGGTGTTGT GCGTTGATGGCGGACTACCCGGCCTTGGCTCGCTTGCGGGTAACGAGGGA CGGAGGGGTAGGAACAAGGCAAGACTATGATGACATGGAAAGAAGGAGGA GCAGCAGCGGCATCAGCAGCAGAGAGGTGGTGGCATCGTATGAAGAGGGC GAGGACGAGGAGGACTCCGAGGAAGATGGCGACGACGATATTTTGCGTGA ATTGGAGGCCGGGGACGATGGAGGCTTTCTCGAAATTCGTCGAGCGGAAT TGATGCGCCAGGCTCAAGAAGCGGCTGAAATCCAGTACTTGGGTATCGGG CTGCACACTGAATTACCCCCCAATCGAGTGCTTGACCTTGTATACCTCCG GTGTTGTCATCTGGTGGTTCATTGCTATGACCCCTATGGAGAGACGAGTG CCGTGTTGGACTTACAATTGGAAGGGTTGGCAAAGATGTATCCAGGGACG CGGTTTGTTCGGACGCCCTTTGGGGGAGGAGAAGGCTTGAGGCAAGCGTT ACGAGTGCCTGCCCCGGGGAGTGGGAGTGGTTACACCAAGTCCGTATTGT TGAGCTTGAGGGATGGGTCTCTGGTTGATAGTTGCTATGATTATGGGAGA AGGTTTGGGGAGGGGAGGGAGGGAAGGAGGGAGGGAGGGGAGGTGTACTT GGAGGCGGTGGAGCAGTGGTTGAGGCATTGCCAAGTGCTGGAGAGGGAGA GGATGGATGTGGAGAGGGCTCGGAAAATGAGGTTGTTGTTGAAAGCGCAG ATGGGGAGAAAGGGGGGGAAGGGAGGGAGGACAGGGGTGGGGATGCGGAT GGCGATTACGGCGGGAGGGCAGGAGAGAGATGAGGAGGTGGAGGATGGGG GGGAGGACGAGGACGAGGCCGAGTTTTATGAGTGTGGATTGGAAGGGTGC TACAAGCCCTTCATTCACTCACATGTGGGGATGGAGGGTATACAAATGCC GAAAGAATTTGGCGCGATTGGGGAGCATTGA back to top
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