NO08G03660.1, NO08G03660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03660.1
Unique NameNO08G03660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2054
Alignment locationchr8:1023393..1025824 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1023393..1025824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03660.1 vs.
Match: EWM27902.1 (sodium hydrogen exchanger 8 [Nannochloropsis gaditana])

HSP 1 Score: 597.8 bits (1540), Expect = 3.800e-167
Identity = 333/559 (59.57%), Postives = 412/559 (73.70%), Query Frame = 0 
Query:   16 EASEVLMDGFVLVFLCVLAATLIMNHTLGHKLHLKYVTEAGAVIVVGAVLGGIVILSTHGEAKEWLANSISPTVFFIGFLPPIIFNSGYTLKRKVFLYYFVPSVLYAVVGTIITTVFIGLSLYGLGQAGVSLNMSLPECLAFGALITSTDSVAILSIFERLKVDPLVFYLCFGESVLSDAVVLVLYKIFTKFIGAE-MTWASMGHGCVDFLVCLVGSMAIGFLFGCISALVFKHVDLRHTIYEMGVYFLLAYIPSLFSDVVSLSGIVTILFTGMFSRQYTHPNLSVNGQARALFLFAFLSVLSETAVFLQLGFSVFSTQLSSLQPLFIFWTLLLVLVGRAINIYPMSCVINRCTSLNIPRNIQHMLWFAGLRGAMAYVCAKGFPNTYDNQAVVEATTMVIVLVTVFFFGTFTISALESLKIRMGIQASDAVNLSANQSKLLALETRYLLPFLHRKLHLR----------RERHAPHAVEEEGEE------VIEEEEEEGKRGVQSVGEGGLRGTGSMGTISGSFMQNELIDGLF---RRDSMTITSSGAGAPAGRSGGG 555
            E SE +++GF+  FLC+LA  LIMNH +GHK H KY++EAGAV+ VG V+ GIV L  H EAK+WL   ISPTVFFIGFLPPIIFNSGYTL+RKVFLYYFVP V YAV+GT ++++F+GLSLY L QA +S ++S+ ECLAFGALI++TD V++L++FE+LKVDPL+FYL FGESVL+DAV LVL+ IF+KF+G E  T ASMG   VDFL+   GSMA+GFLFGC+SAL+FKH+DLRH+IYEMGVY LLAYIPSLF   + LSGIV ILFTGMFSR YTH NLSV GQA A F+F+ L+VLSETAVFL+LG SVFS +     PL I WTLLL+L+GRA+NIYP+S ++NR TS+ + RN+QHMLWFAGLRGAMAY C+K F N + NQ ++EATTMVIVL+TVF FGTFTI+ LE ++I +G+ A+DAVNLS NQS++LALE +YL+P L R L             R RH  H  EE G+E      V    E       ++ GE   R +   G     FM N+ ID LF    R S+ +++SGAG   G    G
Sbjct:    9 EYSEAIVNGFIFAFLCLLAGCLIMNHMIGHKYHPKYISEAGAVVAVGLVISGIVRLVLHREAKDWL-RGISPTVFFIGFLPPIIFNSGYTLRRKVFLYYFVPIVFYAVIGTFLSSLFVGLSLYALAQAHLSYSLSMAECLAFGALISATDPVSVLAVFEQLKVDPLMFYLVFGESVLNDAVALVLFNIFSKFVGTEAFTTASMGFAIVDFLIIFFGSMAVGFLFGCLSALLFKHIDLRHSIYEMGVYLLLAYIPSLFGTAIELSGIVCILFTGMFSRHYTHRNLSVKGQALAFFIFSLLAVLSETAVFLELGLSVFSGEKEYFHPLLIIWTLLLILIGRALNIYPISFLVNRFTSVKVGRNVQHMLWFAGLRGAMAYACSKQFSNVFGNQPIIEATTMVIVLITVFGFGTFTITMLEKMEIPLGVPATDAVNLSENQSRILALEEKYLVPLLQRPLEFSSQATPWSPNYRGRHG-HDQEEGGKEGGPGDAVPSAPELSPVPYPRNPGERLRRESSGEG-----FMANDHIDRLFGYNARGSIEMSASGAGIAEGDGDDG 560
The following BLAST results are available for this feature:
BLAST of NO08G03660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27902.13.800e-16759.57sodium hydrogen exchanger 8 [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03660NO08G03660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03660.1NO08G03660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03660.1.cds1NO08G03660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03660.1.cds2NO08G03660.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03660.1.cds3NO08G03660.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03660.1 ID=NO08G03660.1|Name=NO08G03660.1|organism=Nannochloropsis oceanica|type=mRNA|length=2054bp
AGGCTCCAAGCAAGGAAGTATCAATCATGGTGGACCCTGAGCTCATCGGG
GAGGCTGCAATTGGGGGAACAGAGGCCTCTGAAGTCCTTATGGATGGCTT
CGTCCTCGTGTTCCTCTGCGTGCTGGCCGCGACGCTCATCATGAACCACA
CTCTTGGGCACAAGCTCCATCTCAAATACGTGACGGAAGCAGGGGCCGTC
ATTGTTGTCGGTGCCGTTTTGGGCGGCATCGTCATTCTCTCTACGCACGG
CGAGGCCAAGGAGTGGCTTGCCAACAGCATCAGCCCCACAGTCTTCTTTA
TCGGTTTCCTTCCGCCCATCATTTTCAACTCGGGCTACACCCTGAAACGG
AAGGTCTTCCTCTACTACTTTGTGCCTTCTGTGTTGTATGCCGTCGTGGG
CACCATCATCACCACTGTCTTCATTGGTCTCTCCCTGTATGGTTTGGGGC
AGGCGGGCGTGTCGCTGAACATGTCACTGCCCGAGTGTCTGGCATTCGGA
GCCTTGATCACCTCCACCGATTCCGTGGCTATCCTCAGTATCTTCGAGCG
TTTGAAAGTCGATCCCTTGGTTTTTTATCTCTGCTTTGGGGAGTCTGTGT
TGAGCGATGCGGTAGTGTTGGTGCTGTACAAAATTTTCACGAAATTCATT
GGAGCGGAAATGACCTGGGCGTCCATGGGACATGGTTGTGTGGATTTCTT
GGTCTGCCTGGTGGGGAGCATGGCAATTGGATTCTTGTTTGGGTGCATTT
CGGCACTGGTTTTCAAGCATGTGGATCTGCGGCACACCATTTATGAGATG
GGGGTTTATTTCCTCTTGGCCTACATTCCGTCCTTGTTCTCGGACGTCGT
ATCACTTAGTGGAATTGTGACGATTCTATTCACTGGTATGTTTTCTCGGC
AGTATACTCACCCAAACCTAAGCGTGAATGGACAAGCCCGTGCCCTTTTC
CTCTTTGCCTTCCTCTCTGTCCTGTCCGAAACCGCCGTTTTCCTACAACT
TGGCTTCAGTGTCTTCAGCACGCAGCTAAGCAGTCTCCAGCCCCTCTTTA
TCTTCTGGACCCTCCTACTTGTCCTCGTTGGGCGAGCCATCAATATTTAC
CCCATGTCATGCGTGATCAACCGGTGCACCTCCCTTAATATTCCCCGCAA
TATCCAGCACATGTTGTGGTTCGCCGGCCTCCGTGGCGCCATGGCCTACG
TCTGCGCGAAGGGATTTCCCAATACCTACGATAACCAAGCCGTCGTCGAA
GCCACAACAATGGTAATCGTCCTTGTTACTGTCTTTTTCTTCGGCACCTT
CACCATCAGCGCCCTCGAAAGTTTGAAAATTCGAATGGGCATCCAGGCCA
GCGATGCAGTCAATCTCAGTGCAAATCAAAGTAAGCTCCTGGCTCTCGAG
ACACGATATTTGTTACCGTTTTTGCACAGAAAATTGCACTTGAGACGAGA
AAGGCATGCACCACACGCTGTGGAGGAAGAGGGCGAGGAGGTGATTGAGG
AGGAGGAGGAGGAGGGGAAGAGGGGAGTACAGTCAGTGGGTGAGGGGGGC
CTGAGGGGAACGGGGTCGATGGGCACGATATCCGGGAGTTTTATGCAGAA
TGAATTGATTGATGGGCTTTTCCGGCGAGATAGCATGACGATAACTAGTA
GCGGTGCTGGCGCTCCGGCGGGAAGGAGCGGTGGTGGGGGGAGTCGAGGG
CTTTCCTCGCATGTGCATGGAAGTAAGTCGTCGGTGGGTGGGGAGAGTGA
ATGTGAGGTTGTGGGTGACAGCAATCCCGGCAACAGCAGCAGTGGGGAAA
TATTCGGGGAGAATATGGAAGAAGGGGAAGAGGACAAGAGGGAAGATGGG
ACAGGGCTCTCGGCAAGAGTAGTGTAAGTATAATTGGAATGTGTGTATGT
TCCGGCCCACTTGCATGAAGCAGGCTGGGAGATAACCGAGTAAGACGAAC
GAGTTTCTGCCGGAGAAAAACGACGAAAATATTCTTATTCTACCCTCAAA
TTTAGAGCGACAAATCAAAAGGAAATATAAGGGAATTAATGGCTTGGGGA
AGAT
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protein sequence of NO08G03660.1

>NO08G03660.1-protein ID=NO08G03660.1-protein|Name=NO08G03660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=617bp
MVDPELIGEAAIGGTEASEVLMDGFVLVFLCVLAATLIMNHTLGHKLHLK
YVTEAGAVIVVGAVLGGIVILSTHGEAKEWLANSISPTVFFIGFLPPIIF
NSGYTLKRKVFLYYFVPSVLYAVVGTIITTVFIGLSLYGLGQAGVSLNMS
LPECLAFGALITSTDSVAILSIFERLKVDPLVFYLCFGESVLSDAVVLVL
YKIFTKFIGAEMTWASMGHGCVDFLVCLVGSMAIGFLFGCISALVFKHVD
LRHTIYEMGVYFLLAYIPSLFSDVVSLSGIVTILFTGMFSRQYTHPNLSV
NGQARALFLFAFLSVLSETAVFLQLGFSVFSTQLSSLQPLFIFWTLLLVL
VGRAINIYPMSCVINRCTSLNIPRNIQHMLWFAGLRGAMAYVCAKGFPNT
YDNQAVVEATTMVIVLVTVFFFGTFTISALESLKIRMGIQASDAVNLSAN
QSKLLALETRYLLPFLHRKLHLRRERHAPHAVEEEGEEVIEEEEEEGKRG
VQSVGEGGLRGTGSMGTISGSFMQNELIDGLFRRDSMTITSSGAGAPAGR
SGGGGSRGLSSHVHGSKSSVGGESECEVVGDSNPGNSSSGEIFGENMEEG
EEDKREDGTGLSARVV*
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mRNA from alignment at chr8:1023393..1025824+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03660.1 ID=NO08G03660.1|Name=NO08G03660.1|organism=Nannochloropsis oceanica|type=mRNA|length=2432bp|location=Sequence derived from alignment at chr8:1023393..1025824+ (Nannochloropsis oceanica)
AGGCTCCAAGCAAGGAAGTATCAATCATGGTGGACCCTGAGCTCATCGGG
GAGGCTGCAATTGGGGGAACAGAGGCCTCTGAAGTCCTTATGGATGGCTT
CGTCCTCGTGTTCCTCTGCGTGCTGGCCGCGACGCTCATCATGAACCACA
CTCTTGGGCACAAGCTCCATGTAAGTCGTCCACGTCTGGCCCCTTTCCAT
CCTTATTCTCTCCTTCCACCCCTCCTGTTTTCCATTTATCCTTCCCCTCG
TTGGTTGAGGGTGGCTCAACATATTGGACCTGTCTGTCATCCTCCGTTCT
TCTTTTCTTGATTTTCTCAGTCACTCGGCGCTCAAAATCTTCTTTCTTGA
ACCCTTTCTCCTCTACAGCTCAAATACGTGACGGAAGCAGGGGCCGTCAT
TGTTGTCGGTGCCGTTTTGGGCGGCATCGTCATTCTCTCTACGCACGGCG
AGGCCAAGGAGTGGCTTGCCAACAGCATCAGCCCCACAGTCTTCTTTATC
GGTTTCCTTCCGCCCATCATTTTCAACTCGGGCTACACCCTGAAACGGAA
GGTCTTCCTCTACTACTTTGTGCCTTCTGTGTTGTATGCCGTCGTGGGCA
CCATCATCACCACTGTCTTCATTGGTCTCTCCCTGTATGGTTTGGGGCAG
GCGGGCGTGTCGCTGAACATGTCACTGCCCGAGTGTCTGGCATTCGGAGC
CTTGATCACCTCCACCGATTCCGTGGCTATCCTCAGTATCTTCGAGCGTT
TGAAAGTCGATCCCTTGGTTTTTTATCTCTGCTTTGGGGAGTCTGTGTTG
AGCGATGCGGTAGTGTTGGTGCTGTACAAAATTTTCACGAAATTCATTGG
AGCGGAAATGACCTGGGCGTCCATGGGACATGGTTGTGTGGATTTCTTGG
TCTGCCTGGTGGGGAGCATGGCAATTGGATTCTTGTTTGGGTGCATTTCG
GCACTGGTTTTCAAGCATGTGGATCTGCGGCACACCATTTATGAGATGGG
GGTTTATTTCCTCTTGGCCTACATTCCGTCCTTGTTCTCGGACGTCGTAT
CACTTAGTGGAATTGTGACGATTCTATTCACTGGTATGTTTTCTCGGCAG
TATACTCACCCAAACCTAAGCGTGAATGGACAAGCCCGTGCCCTTTTCCT
CTTTGCCTTCCTCTCTGTCCTGTCCGAAACCGCCGTTTTCCTACAACTTG
GCTTCAGTGTCTTCAGCACGCAGCTAAGCAGTCTCCAGCCCCTCTTTATC
TTCTGGACCCTCCTACTTGTCCTCGTTGGGCGAGCCATCAATATTTACCC
CATGTCATGCGTGATCAACCGGTGCACCTCCCTTAATATTCCCCGCAATA
TCCAGCACATGTACGTAGCTCCTCCTTCTCTCCCTCCGTCCCGTCTTCCC
TCACTCCCTCCCTCCCACCCAACCAGCGTCCCAAAGAGAGCAAATAGAGA
GAAAGCAAATTCTTTATCGATGAGTACTCAGTAGCACATGCTTTTTTCCT
TCCTCCATCCCACCCTCATGCCCCCCTCTTTCCCCTACAGGTTGTGGTTC
GCCGGCCTCCGTGGCGCCATGGCCTACGTCTGCGCGAAGGGATTTCCCAA
TACCTACGATAACCAAGCCGTCGTCGAAGCCACAACAATGGTAATCGTCC
TTGTTACTGTCTTTTTCTTCGGCACCTTCACCATCAGCGCCCTCGAAAGT
TTGAAAATTCGAATGGGCATCCAGGCCAGCGATGCAGTCAATCTCAGTGC
AAATCAAAGTAAGCTCCTGGCTCTCGAGACACGATATTTGTTACCGTTTT
TGCACAGAAAATTGCACTTGAGACGAGAAAGGCATGCACCACACGCTGTG
GAGGAAGAGGGCGAGGAGGTGATTGAGGAGGAGGAGGAGGAGGGGAAGAG
GGGAGTACAGTCAGTGGGTGAGGGGGGCCTGAGGGGAACGGGGTCGATGG
GCACGATATCCGGGAGTTTTATGCAGAATGAATTGATTGATGGGCTTTTC
CGGCGAGATAGCATGACGATAACTAGTAGCGGTGCTGGCGCTCCGGCGGG
AAGGAGCGGTGGTGGGGGGAGTCGAGGGCTTTCCTCGCATGTGCATGGAA
GTAAGTCGTCGGTGGGTGGGGAGAGTGAATGTGAGGTTGTGGGTGACAGC
AATCCCGGCAACAGCAGCAGTGGGGAAATATTCGGGGAGAATATGGAAGA
AGGGGAAGAGGACAAGAGGGAAGATGGGACAGGGCTCTCGGCAAGAGTAG
TGTAAGTATAATTGGAATGTGTGTATGTTCCGGCCCACTTGCATGAAGCA
GGCTGGGAGATAACCGAGTAAGACGAACGAGTTTCTGCCGGAGAAAAACG
ACGAAAATATTCTTATTCTACCCTCAAATTTAGAGCGACAAATCAAAAGG
AAATATAAGGGAATTAATGGCTTGGGGAAGAT
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Coding sequence (CDS) from alignment at chr8:1023393..1025824+

>NO08G03660.1 ID=NO08G03660.1|Name=NO08G03660.1|organism=Nannochloropsis oceanica|type=CDS|length=1851bp|location=Sequence derived from alignment at chr8:1023393..1025824+ (Nannochloropsis oceanica)
ATGGTGGACCCTGAGCTCATCGGGGAGGCTGCAATTGGGGGAACAGAGGC
CTCTGAAGTCCTTATGGATGGCTTCGTCCTCGTGTTCCTCTGCGTGCTGG
CCGCGACGCTCATCATGAACCACACTCTTGGGCACAAGCTCCATCTCAAA
TACGTGACGGAAGCAGGGGCCGTCATTGTTGTCGGTGCCGTTTTGGGCGG
CATCGTCATTCTCTCTACGCACGGCGAGGCCAAGGAGTGGCTTGCCAACA
GCATCAGCCCCACAGTCTTCTTTATCGGTTTCCTTCCGCCCATCATTTTC
AACTCGGGCTACACCCTGAAACGGAAGGTCTTCCTCTACTACTTTGTGCC
TTCTGTGTTGTATGCCGTCGTGGGCACCATCATCACCACTGTCTTCATTG
GTCTCTCCCTGTATGGTTTGGGGCAGGCGGGCGTGTCGCTGAACATGTCA
CTGCCCGAGTGTCTGGCATTCGGAGCCTTGATCACCTCCACCGATTCCGT
GGCTATCCTCAGTATCTTCGAGCGTTTGAAAGTCGATCCCTTGGTTTTTT
ATCTCTGCTTTGGGGAGTCTGTGTTGAGCGATGCGGTAGTGTTGGTGCTG
TACAAAATTTTCACGAAATTCATTGGAGCGGAAATGACCTGGGCGTCCAT
GGGACATGGTTGTGTGGATTTCTTGGTCTGCCTGGTGGGGAGCATGGCAA
TTGGATTCTTGTTTGGGTGCATTTCGGCACTGGTTTTCAAGCATGTGGAT
CTGCGGCACACCATTTATGAGATGGGGGTTTATTTCCTCTTGGCCTACAT
TCCGTCCTTGTTCTCGGACGTCGTATCACTTAGTGGAATTGTGACGATTC
TATTCACTGGTATGTTTTCTCGGCAGTATACTCACCCAAACCTAAGCGTG
AATGGACAAGCCCGTGCCCTTTTCCTCTTTGCCTTCCTCTCTGTCCTGTC
CGAAACCGCCGTTTTCCTACAACTTGGCTTCAGTGTCTTCAGCACGCAGC
TAAGCAGTCTCCAGCCCCTCTTTATCTTCTGGACCCTCCTACTTGTCCTC
GTTGGGCGAGCCATCAATATTTACCCCATGTCATGCGTGATCAACCGGTG
CACCTCCCTTAATATTCCCCGCAATATCCAGCACATGTTGTGGTTCGCCG
GCCTCCGTGGCGCCATGGCCTACGTCTGCGCGAAGGGATTTCCCAATACC
TACGATAACCAAGCCGTCGTCGAAGCCACAACAATGGTAATCGTCCTTGT
TACTGTCTTTTTCTTCGGCACCTTCACCATCAGCGCCCTCGAAAGTTTGA
AAATTCGAATGGGCATCCAGGCCAGCGATGCAGTCAATCTCAGTGCAAAT
CAAAGTAAGCTCCTGGCTCTCGAGACACGATATTTGTTACCGTTTTTGCA
CAGAAAATTGCACTTGAGACGAGAAAGGCATGCACCACACGCTGTGGAGG
AAGAGGGCGAGGAGGTGATTGAGGAGGAGGAGGAGGAGGGGAAGAGGGGA
GTACAGTCAGTGGGTGAGGGGGGCCTGAGGGGAACGGGGTCGATGGGCAC
GATATCCGGGAGTTTTATGCAGAATGAATTGATTGATGGGCTTTTCCGGC
GAGATAGCATGACGATAACTAGTAGCGGTGCTGGCGCTCCGGCGGGAAGG
AGCGGTGGTGGGGGGAGTCGAGGGCTTTCCTCGCATGTGCATGGAAGTAA
GTCGTCGGTGGGTGGGGAGAGTGAATGTGAGGTTGTGGGTGACAGCAATC
CCGGCAACAGCAGCAGTGGGGAAATATTCGGGGAGAATATGGAAGAAGGG
GAAGAGGACAAGAGGGAAGATGGGACAGGGCTCTCGGCAAGAGTAGTGTA
A
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Synonyms
Publications