NO08G03490.1, NO08G03490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03490.1
Unique NameNO08G03490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length942
Alignment locationchr8:972635..974111 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:972635..974111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G03490.1 vs.
Match: EWM26807.1 (Prohibitin [Nannochloropsis gaditana])

HSP 1 Score: 549.3 bits (1414), Expect = 7.800e-153
Identity = 289/313 (92.33%), Postives = 304/313 (97.12%), Query Frame = 0
Query:    1 MNAAKKFAENLGSKIPKGAGMGGGGGGGGGSGGPAGISPAGPIGALLGLGVVAYAGYNSFYTVEGGHRALLFNRLLGVKEEVYIEGMHIMIPWFEMPVIYDIRPKPRMIQSLTGSKDMQMVNITIRVLSKPDASQLRWIFRTLGKDYDERVLPSIVNEVSKAVVAKYNAAELLTKREMVSSQIRLQLEKRAKEFRIVLDDVSITHLTFSREYTNAVEAKQVAQQEAERAKYVVMKANQEKEAIIIKAEGEAQSAALVGKAIRENPAFIKLRKIDAARDIANVVSASGQKVYLSADSLLLNMYTGDEEKGAKRR 314
            MNAAKKFAENLGSKIPKGAGMGGG GGGGG GGP G+SPAGP+GALLG+  + YAGYNSFYTVEGGHRALLFNRL+GVKEEVY+EGMH MIPWF+MP+IYDIRPKPRMIQSLTGSKDMQMVNITIRVLSKPD++QLRWIFRTLG+DYDERVLPSIVNEVSKAVVAKYNAAELLTKREMVS+QIRLQLEKRAKEFRIVLDDVSITHLTFSREYTNAVEAKQVAQQEAERAKYVVMKANQEKEAIIIKAEGEAQSAALVGKAIRENPAFIKLRKIDAARDIANVVS+SGQKVYLSADSLLLNMY+GDEEK  K+R
Sbjct:    1 MNAAKKFAENLGSKIPKGAGMGGGAGGGGGGGGPGGMSPAGPLGALLGVTGILYAGYNSFYTVEGGHRALLFNRLIGVKEEVYMEGMHFMIPWFDMPIIYDIRPKPRMIQSLTGSKDMQMVNITIRVLSKPDSAQLRWIFRTLGRDYDERVLPSIVNEVSKAVVAKYNAAELLTKREMVSTQIRLQLEKRAKEFRIVLDDVSITHLTFSREYTNAVEAKQVAQQEAERAKYVVMKANQEKEAIIIKAEGEAQSAALVGKAIRENPAFIKLRKIDAARDIANVVSSSGQKVYLSADSLLLNMYSGDEEKSGKKR 313          
The following BLAST results are available for this feature:
BLAST of NO08G03490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26807.17.800e-15392.33Prohibitin [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03490NO08G03490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03490.1NO08G03490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03490.1.cds1NO08G03490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03490.1.cds2NO08G03490.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03490.1.cds3NO08G03490.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03490.1.cds4NO08G03490.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03490.1 ID=NO08G03490.1|Name=NO08G03490.1|organism=Nannochloropsis oceanica|type=mRNA|length=942bp
ATGAACGCGGCGAAGAAGTTCGCGGAGAACCTAGGCAGCAAGATTCCAAA
GGGGGCAGGCATGGGTGGGGGAGGTGGTGGCGGTGGTGGAAGTGGAGGAC
CGGCAGGTATCAGTCCGGCGGGGCCGATTGGGGCTTTACTGGGGTTGGGA
GTGGTGGCGTACGCGGGCTACAACAGTTTTTACACTGTGGAGGGTGGGCA
CCGTGCACTGTTGTTCAACAGACTACTGGGTGTGAAGGAGGAAGTTTATA
TTGAGGGCATGCACATCATGATCCCTTGGTTTGAGATGCCCGTGATTTAT
GACATCAGACCTAAGCCGCGGATGATTCAGTCCTTGACGGGCAGCAAAGA
CATGCAAATGGTGAACATCACCATCCGTGTGCTCTCCAAGCCTGACGCTT
CCCAGCTCCGATGGATCTTTCGTACCCTTGGCAAGGACTATGATGAGCGC
GTCCTGCCTTCGATCGTCAACGAGGTGTCAAAGGCAGTGGTTGCTAAGTA
CAATGCCGCCGAGCTGCTAACGAAGCGAGAGATGGTCTCATCTCAAATTC
GATTGCAGTTGGAAAAGCGGGCGAAAGAGTTCCGGATCGTGTTGGACGAT
GTATCTATCACGCACTTGACTTTCTCGAGGGAGTATACCAATGCCGTGGA
GGCGAAGCAAGTCGCGCAACAGGAGGCCGAACGCGCCAAGTATGTGGTGA
TGAAGGCGAACCAGGAGAAGGAAGCTATCATCATTAAGGCCGAAGGTGAG
GCTCAATCTGCAGCCCTGGTCGGGAAGGCCATCCGTGAGAACCCTGCGTT
TATCAAGCTCCGCAAAATTGATGCGGCGAGGGACATTGCGAATGTAGTGT
CGGCGTCCGGACAGAAGGTGTACCTTTCGGCAGACTCATTGTTGTTGAAC
ATGTACACCGGGGATGAGGAGAAGGGGGCTAAGAGGCGGTAG
back to top

protein sequence of NO08G03490.1

>NO08G03490.1-protein ID=NO08G03490.1-protein|Name=NO08G03490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MNAAKKFAENLGSKIPKGAGMGGGGGGGGGSGGPAGISPAGPIGALLGLG
VVAYAGYNSFYTVEGGHRALLFNRLLGVKEEVYIEGMHIMIPWFEMPVIY
DIRPKPRMIQSLTGSKDMQMVNITIRVLSKPDASQLRWIFRTLGKDYDER
VLPSIVNEVSKAVVAKYNAAELLTKREMVSSQIRLQLEKRAKEFRIVLDD
VSITHLTFSREYTNAVEAKQVAQQEAERAKYVVMKANQEKEAIIIKAEGE
AQSAALVGKAIRENPAFIKLRKIDAARDIANVVSASGQKVYLSADSLLLN
MYTGDEEKGAKRR*
back to top

mRNA from alignment at chr8:972635..974111-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03490.1 ID=NO08G03490.1|Name=NO08G03490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1477bp|location=Sequence derived from alignment at chr8:972635..974111- (Nannochloropsis oceanica)
ATGAACGCGGCGAAGAAGTTCGCGGAGAACCTAGGCAGCAAGATTCCAAA GGGTATGTGTTATGGATGGGGTGGAGTGAGTGGATGGATGCATGCTGGCT GAGGACAAGACTGAGGAAGGGATGCGGCCTCATCGCTTACAATGTATGCT ATGCATCGCAAAATCTCACTTATACACAACCGACAATTAAAAAACAGGGG CAGGCATGGGTGGGGGAGGTGGTGGCGGTGGTGGAAGTGGAGGACCGGCA GGTATCAGTCCGGCGGGGCCGATTGGGGCTTTACTGGGGTTGGGAGTGGT GGCGTACGCGGGCTACAACAGTTTTTACACTGTGGAGGGTGGGCACCGTG CACTGTTGTTCAACAGACTACTGGGTGTGAAGGAGGAAGTTTATATTGAG GGCATGCACATCATGATCCCTTGGTTTGAGATGCCCGTGATTTATGACAT CAGACCTAAGCCGCGGATGATTCAGTCCTTGACGGGCAGCAAAGGTAAGG GAAGGACATGGGGACAGAAGGGAGGCCGAGCTAGAGAGACGTAAGAATGA GACCCTCTCCGATATGTCATTTGCTTTCGCGCTTGAACAATGCTTGACCC CTCCAGTGGTTGATGACTTTTCCTCCACCCCTTCCTCCCTCCCTCCCTAC TTCCATCCCTTCAGACATGCAAATGGTGAACATCACCATCCGTGTGCTCT CCAAGCCTGACGCTTCCCAGCTCCGATGGATCTTTCGTACCCTTGGCAAG GACTATGATGAGCGCGTCCTGCCTTCGATCGTCAACGAGGTGTCAAAGGC AGTGGTTGCTAAGTACAATGCCGCCGAGCTGCTAACGAAGCGAGAGATGG TCTCATCTCAAATTCGATTGCAGTTGGAAAAGCGGGCGAAAGAGTTCCGG ATCGTGTTGGACGATGTATCTATCACGCACTTGACTTTCTCGAGGGAGTA TACCAATGCCGTGGAGGCGAAGCAAGTCGGTACGTGGGTGTGAAGGAGGG AGGGAGGGAAGCAGATAGGGAGTGAGGGAAAGGACGTTAGGACGCCCGTG GCCGGCTACCATTTAGTTACGTGAAAATCACTAACTGCTGCTTTTTGCTC ATTCATTCTTTCACCTCAATGCATACCTGTATTCAATCAATCACCAATTA TCCTTCTCTCATCCCCTTCTTCCTCCCTTCCCTCCCTCCCCCTCTACAGC GCAACAGGAGGCCGAACGCGCCAAGTATGTGGTGATGAAGGCGAACCAGG AGAAGGAAGCTATCATCATTAAGGCCGAAGGTGAGGCTCAATCTGCAGCC CTGGTCGGGAAGGCCATCCGTGAGAACCCTGCGTTTATCAAGCTCCGCAA AATTGATGCGGCGAGGGACATTGCGAATGTAGTGTCGGCGTCCGGACAGA AGGTGTACCTTTCGGCAGACTCATTGTTGTTGAACATGTACACCGGGGAT GAGGAGAAGGGGGCTAAGAGGCGGTAG
back to top

Coding sequence (CDS) from alignment at chr8:972635..974111-

>NO08G03490.1 ID=NO08G03490.1|Name=NO08G03490.1|organism=Nannochloropsis oceanica|type=CDS|length=942bp|location=Sequence derived from alignment at chr8:972635..974111- (Nannochloropsis oceanica)
ATGAACGCGGCGAAGAAGTTCGCGGAGAACCTAGGCAGCAAGATTCCAAA
GGGGGCAGGCATGGGTGGGGGAGGTGGTGGCGGTGGTGGAAGTGGAGGAC
CGGCAGGTATCAGTCCGGCGGGGCCGATTGGGGCTTTACTGGGGTTGGGA
GTGGTGGCGTACGCGGGCTACAACAGTTTTTACACTGTGGAGGGTGGGCA
CCGTGCACTGTTGTTCAACAGACTACTGGGTGTGAAGGAGGAAGTTTATA
TTGAGGGCATGCACATCATGATCCCTTGGTTTGAGATGCCCGTGATTTAT
GACATCAGACCTAAGCCGCGGATGATTCAGTCCTTGACGGGCAGCAAAGA
CATGCAAATGGTGAACATCACCATCCGTGTGCTCTCCAAGCCTGACGCTT
CCCAGCTCCGATGGATCTTTCGTACCCTTGGCAAGGACTATGATGAGCGC
GTCCTGCCTTCGATCGTCAACGAGGTGTCAAAGGCAGTGGTTGCTAAGTA
CAATGCCGCCGAGCTGCTAACGAAGCGAGAGATGGTCTCATCTCAAATTC
GATTGCAGTTGGAAAAGCGGGCGAAAGAGTTCCGGATCGTGTTGGACGAT
GTATCTATCACGCACTTGACTTTCTCGAGGGAGTATACCAATGCCGTGGA
GGCGAAGCAAGTCGCGCAACAGGAGGCCGAACGCGCCAAGTATGTGGTGA
TGAAGGCGAACCAGGAGAAGGAAGCTATCATCATTAAGGCCGAAGGTGAG
GCTCAATCTGCAGCCCTGGTCGGGAAGGCCATCCGTGAGAACCCTGCGTT
TATCAAGCTCCGCAAAATTGATGCGGCGAGGGACATTGCGAATGTAGTGT
CGGCGTCCGGACAGAAGGTGTACCTTTCGGCAGACTCATTGTTGTTGAAC
ATGTACACCGGGGATGAGGAGAAGGGGGCTAAGAGGCGGTAG
back to top
Synonyms
Publications