NO08G03380.1, NO08G03380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03380.1
Unique NameNO08G03380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1116
Alignment locationchr8:934970..936085 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:934970..936085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03380.1 vs.
Match: EWM26817.1 (Pectin lyase fold/virulence factor [Nannochloropsis gaditana])

HSP 1 Score: 278.1 bits (710), Expect = 4.000e-71
Identity = 174/373 (46.65%), Postives = 227/373 (60.86%), Query Frame = 0 
Query:    1 MPAAPAAVPPASSQD-ADFPQRSSSSQEAPRAPSQPAASAAPPPSLRARQRPTIRQVAFALIIFLGVVVGVASILGVRRQYAQPFDVLSSDTSTTDNDKGGIIESPSLSTNSKHATSGPTKINA---IGSSSSSSSSSSTTTSTTQAEHLLPGLLEIDKYAYARSKGGLADGQGIIEEEMEENFIAIHGCTPQTGPQLRLLVETTECSVITLMPGMKYVLDDEIIVRRPVVIMGRPLSPPIIDAHFIYRAFLVEEGGKLDLRFVEAWRGVPAPVIQDIYDELKGGVAWIRRGGVGVFLGCVMLVHEDEIGNVLFTRNPELTIRIYGGFLLLESGTLRVTDCHFLISRPGVLWREVYTVGGY---VQGDRFILG 367
            M  A AA+P   S D A F      S   P+   +P       P+ + ++R   R+   A ++FL +V G+A++   RRQ        +S TS      G ++    +   +  +  GP++      I  S S  S+SST   +  +E LLPG     +   A  KGG     G  E+    ++IA+HGCTP TG QLR LVET  C VITL PG++YVLD+EI VRR VVI+GRPL+ P+IDAH I RAF VE  G+LDLRFV+ WRGVP  V+ ++Y EL+GGVAWIR GG GVF GC+MLVH+DE+G+VL   +  +T R+YGGFLLLE+GTLRV DCH L+ RPGVL REVYTVGGY   V G+ F+ G
Sbjct:   19 MRTACAALPTLLSVDEAHFESPEGLSCSVPKKGGRPPPYTTSSPASQCQRR---RRALAATLLFLCLVAGIAAVFRSRRQDG------NSKTS------GPVVAEDKIIAPAVVSKGGPSEAVEGIKIEKSGSHESASSTAKGSIPSEGLLPGGGGDARVQPAEEKGG-----GEEEDASWGDYIAVHGCTPDTGVQLRSLVETGSCPVITLTPGVRYVLDEEIHVRRAVVIIGRPLTLPVIDAHLIARAFSVEAKGRLDLRFVKVWRGVPMAVVDEVYLELRGGVAWIREGGEGVFTGCLMLVHDDEVGDVLLASDLRVTARLYGGFLLLEAGTLRVRDCHMLLQRPGVLLREVYTVGGYILVVSGNLFMTG 371
The following BLAST results are available for this feature:
BLAST of NO08G03380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26817.14.000e-7146.65Pectin lyase fold/virulence factor [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03380NO08G03380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03380.1NO08G03380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03380.1.cds1NO08G03380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03380.1 ID=NO08G03380.1|Name=NO08G03380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1116bp
ATGCCTGCAGCCCCAGCTGCAGTGCCACCAGCGAGCAGTCAAGACGCCGA
CTTCCCGCAACGGTCATCATCATCCCAAGAAGCCCCTCGCGCCCCCAGCC
AACCAGCGGCATCTGCAGCACCACCACCATCACTGCGCGCCCGCCAGCGA
CCAACAATAAGACAAGTTGCCTTCGCGCTTATCATTTTTCTTGGGGTAGT
GGTGGGCGTGGCAAGCATACTAGGGGTACGGAGGCAGTACGCACAACCAT
TCGACGTCCTCTCTTCCGACACAAGCACCACCGATAATGATAAAGGTGGC
ATCATCGAGTCACCATCCTTATCAACCAATTCAAAGCATGCGACCTCGGG
CCCCACCAAAATTAATGCCATCGGGAGCAGCAGCAGCAGCAGTAGTAGTT
CCAGCACCACCACCTCTACCACCCAAGCGGAACATCTCTTGCCCGGTCTT
CTCGAGATTGATAAATATGCTTATGCCAGGAGCAAAGGTGGGCTGGCGGA
CGGTCAAGGAATAATAGAGGAAGAGATGGAAGAGAACTTTATTGCTATTC
ATGGGTGTACGCCACAGACTGGTCCACAGCTTCGACTGCTGGTCGAAACG
ACGGAATGTAGTGTCATTACGCTTATGCCGGGTATGAAATACGTGTTGGA
TGACGAGATTATTGTACGGAGACCCGTAGTGATCATGGGGCGGCCATTGA
GCCCGCCTATTATAGATGCTCATTTCATCTATCGTGCCTTTTTGGTGGAG
GAAGGTGGGAAGTTGGACTTGAGGTTCGTCGAGGCGTGGAGGGGAGTGCC
GGCGCCAGTTATCCAAGACATCTATGATGAGCTGAAGGGGGGGGTTGCGT
GGATCAGAAGGGGGGGGGTAGGGGTCTTCCTGGGGTGTGTGATGCTGGTG
CATGAAGACGAGATCGGGAATGTGCTTTTCACGCGGAACCCGGAATTAAC
TATCCGGATATATGGCGGGTTTTTGTTATTAGAAAGCGGGACATTAAGGG
TTACGGATTGTCATTTTCTAATCAGTCGGCCGGGAGTGTTGTGGAGGGAG
GTATATACGGTTGGGGGGTATGTGCAGGGGGATCGCTTTATCTTGGGGCG
GGTGTGGCGACGTTGA
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protein sequence of NO08G03380.1

>NO08G03380.1-protein ID=NO08G03380.1-protein|Name=NO08G03380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MPAAPAAVPPASSQDADFPQRSSSSQEAPRAPSQPAASAAPPPSLRARQR
PTIRQVAFALIIFLGVVVGVASILGVRRQYAQPFDVLSSDTSTTDNDKGG
IIESPSLSTNSKHATSGPTKINAIGSSSSSSSSSSTTTSTTQAEHLLPGL
LEIDKYAYARSKGGLADGQGIIEEEMEENFIAIHGCTPQTGPQLRLLVET
TECSVITLMPGMKYVLDDEIIVRRPVVIMGRPLSPPIIDAHFIYRAFLVE
EGGKLDLRFVEAWRGVPAPVIQDIYDELKGGVAWIRRGGVGVFLGCVMLV
HEDEIGNVLFTRNPELTIRIYGGFLLLESGTLRVTDCHFLISRPGVLWRE
VYTVGGYVQGDRFILGRVWRR*
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mRNA from alignment at chr8:934970..936085-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03380.1 ID=NO08G03380.1|Name=NO08G03380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1116bp|location=Sequence derived from alignment at chr8:934970..936085- (Nannochloropsis oceanica)
ATGCCTGCAGCCCCAGCTGCAGTGCCACCAGCGAGCAGTCAAGACGCCGA
CTTCCCGCAACGGTCATCATCATCCCAAGAAGCCCCTCGCGCCCCCAGCC
AACCAGCGGCATCTGCAGCACCACCACCATCACTGCGCGCCCGCCAGCGA
CCAACAATAAGACAAGTTGCCTTCGCGCTTATCATTTTTCTTGGGGTAGT
GGTGGGCGTGGCAAGCATACTAGGGGTACGGAGGCAGTACGCACAACCAT
TCGACGTCCTCTCTTCCGACACAAGCACCACCGATAATGATAAAGGTGGC
ATCATCGAGTCACCATCCTTATCAACCAATTCAAAGCATGCGACCTCGGG
CCCCACCAAAATTAATGCCATCGGGAGCAGCAGCAGCAGCAGTAGTAGTT
CCAGCACCACCACCTCTACCACCCAAGCGGAACATCTCTTGCCCGGTCTT
CTCGAGATTGATAAATATGCTTATGCCAGGAGCAAAGGTGGGCTGGCGGA
CGGTCAAGGAATAATAGAGGAAGAGATGGAAGAGAACTTTATTGCTATTC
ATGGGTGTACGCCACAGACTGGTCCACAGCTTCGACTGCTGGTCGAAACG
ACGGAATGTAGTGTCATTACGCTTATGCCGGGTATGAAATACGTGTTGGA
TGACGAGATTATTGTACGGAGACCCGTAGTGATCATGGGGCGGCCATTGA
GCCCGCCTATTATAGATGCTCATTTCATCTATCGTGCCTTTTTGGTGGAG
GAAGGTGGGAAGTTGGACTTGAGGTTCGTCGAGGCGTGGAGGGGAGTGCC
GGCGCCAGTTATCCAAGACATCTATGATGAGCTGAAGGGGGGGGTTGCGT
GGATCAGAAGGGGGGGGGTAGGGGTCTTCCTGGGGTGTGTGATGCTGGTG
CATGAAGACGAGATCGGGAATGTGCTTTTCACGCGGAACCCGGAATTAAC
TATCCGGATATATGGCGGGTTTTTGTTATTAGAAAGCGGGACATTAAGGG
TTACGGATTGTCATTTTCTAATCAGTCGGCCGGGAGTGTTGTGGAGGGAG
GTATATACGGTTGGGGGGTATGTGCAGGGGGATCGCTTTATCTTGGGGCG
GGTGTGGCGACGTTGA
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Coding sequence (CDS) from alignment at chr8:934970..936085-

>NO08G03380.1 ID=NO08G03380.1|Name=NO08G03380.1|organism=Nannochloropsis oceanica|type=CDS|length=1116bp|location=Sequence derived from alignment at chr8:934970..936085- (Nannochloropsis oceanica)
ATGCCTGCAGCCCCAGCTGCAGTGCCACCAGCGAGCAGTCAAGACGCCGA
CTTCCCGCAACGGTCATCATCATCCCAAGAAGCCCCTCGCGCCCCCAGCC
AACCAGCGGCATCTGCAGCACCACCACCATCACTGCGCGCCCGCCAGCGA
CCAACAATAAGACAAGTTGCCTTCGCGCTTATCATTTTTCTTGGGGTAGT
GGTGGGCGTGGCAAGCATACTAGGGGTACGGAGGCAGTACGCACAACCAT
TCGACGTCCTCTCTTCCGACACAAGCACCACCGATAATGATAAAGGTGGC
ATCATCGAGTCACCATCCTTATCAACCAATTCAAAGCATGCGACCTCGGG
CCCCACCAAAATTAATGCCATCGGGAGCAGCAGCAGCAGCAGTAGTAGTT
CCAGCACCACCACCTCTACCACCCAAGCGGAACATCTCTTGCCCGGTCTT
CTCGAGATTGATAAATATGCTTATGCCAGGAGCAAAGGTGGGCTGGCGGA
CGGTCAAGGAATAATAGAGGAAGAGATGGAAGAGAACTTTATTGCTATTC
ATGGGTGTACGCCACAGACTGGTCCACAGCTTCGACTGCTGGTCGAAACG
ACGGAATGTAGTGTCATTACGCTTATGCCGGGTATGAAATACGTGTTGGA
TGACGAGATTATTGTACGGAGACCCGTAGTGATCATGGGGCGGCCATTGA
GCCCGCCTATTATAGATGCTCATTTCATCTATCGTGCCTTTTTGGTGGAG
GAAGGTGGGAAGTTGGACTTGAGGTTCGTCGAGGCGTGGAGGGGAGTGCC
GGCGCCAGTTATCCAAGACATCTATGATGAGCTGAAGGGGGGGGTTGCGT
GGATCAGAAGGGGGGGGGTAGGGGTCTTCCTGGGGTGTGTGATGCTGGTG
CATGAAGACGAGATCGGGAATGTGCTTTTCACGCGGAACCCGGAATTAAC
TATCCGGATATATGGCGGGTTTTTGTTATTAGAAAGCGGGACATTAAGGG
TTACGGATTGTCATTTTCTAATCAGTCGGCCGGGAGTGTTGTGGAGGGAG
GTATATACGGTTGGGGGGTATGTGCAGGGGGATCGCTTTATCTTGGGGCG
GGTGTGGCGACGTTGA
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Synonyms
Publications