NO08G03310.1, NO08G03310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03310.1
Unique NameNO08G03310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1329
Alignment locationchr8:912366..914522 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:912366..914522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03310.1 vs.
Match: EWM26783.1 (50s ribosomal protein l19 [Nannochloropsis gaditana])

HSP 1 Score: 224.2 bits (570), Expect = 3.700e-55
Identity = 129/206 (62.62%), Postives = 151/206 (73.30%), Query Frame = 0 
Query:    4 AARAVGHAWTRLVSSTIM--------GTRSSGGLSSSTMSNTRPISSASSPMSAATSTPTPTAAIAATRPPKHKTPRKRASSILAELKLAEHAKGLAANADKDIPTFRPGDSIEVKMVTHLTSTETDTYRGVVLSVRKNGADTRFTLADVFLGTPILSSIPLYSPFIKSLKVLQAAYIHKGKKRVRRSKLYYLWEKRDPKVFSIST 202
            A RA+   W R  SS ++         +R S G  ++   + +  SS      A  S P+ T     T+  KHKTPRKRASS+LAEL+  EH+K ++ANA K+ PTFR GDSIEVKMVTHL+STE DTYRGVVL +R+NGAD+RF LADVFLGTPIL++IPLYSPFIKSLKVLQ AYIHKGKKRVRRSKLYYLWEKRDPK FSIST
Sbjct:    2 AIRALKWPWMRFTSSALLPKPLLGAGASRKSSGCLAALTPSRQAFSSNGLSADAPASGPSET-----TKYSKHKTPRKRASSVLAELRRIEHSKSISANAAKNFPTFRAGDSIEVKMVTHLSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKVLQPAYIHKGKKRVRRSKLYYLWEKRDPKYFSIST 202
The following BLAST results are available for this feature:
BLAST of NO08G03310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26783.13.700e-5562.6250s ribosomal protein l19 [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03310NO08G03310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03310.1NO08G03310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03310.1.cds1NO08G03310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03310.1.cds2NO08G03310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03310.1.cds3NO08G03310.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03310.1.cds4NO08G03310.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03310.1 ID=NO08G03310.1|Name=NO08G03310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1329bp
GACCATAACAGCGTATTAATCTGTACTAGCATGTGATAAAAAAGTAAGTT
TATTGCGATCTGGAGAGGCAGCAAGGCAAAAAAGCAGCCAGGCAGGTATT
CGCCCTTGCCCGCTTTTTCTTTTATGCACTCTGGTCTATCGTCCCTTGTC
GACAAAGTGCTTTCGAGGGAGGCTCGGCTTCATAAAGAGGAAGCACCGTA
GTATCGTCGTAATGGTGCCGGTGGTGGACAAGGAGCTAGTCCGTGTGGTT
GCAGGTAGCAAGCAAGCGGAAGTGTCTGTGAGGAGTATTGAGGCTGAAGA
CGACGGAGTTCTTTCTCATCACTGGTGCGGCACGACGTCGAAGGTATCAT
CGCGGTCCTTGGTTTCAGTCAAAGCTATGGTCACTGTATAGAAAAACAAG
GATCAAGGCCCGAAGAACACTGCAGCGCAGTGAGAGCATGAGCTTGGTCA
GAGTGTGATATATGGATGTAGTTAACTGCCCATTCCCCTGTCTTTCATCC
TGCCTCTCCCACAAACCATCGCACGGCCAACTAAACTTACTATCCCCCCC
ACCCCCAAACACACAGCCATGGCAGCAGCAGCAAGAGCCGTGGGACATGC
CTGGACGCGGCTCGTGTCATCAACAATCATGGGCACGAGAAGTAGCGGCG
GTCTCTCCTCCTCCACTATGAGCAACACCCGTCCCATCTCCTCTGCCTCC
TCCCCCATGTCGGCCGCTACTTCCACTCCCACACCCACCGCAGCCATCGC
GGCCACCAGACCACCCAAACACAAGACGCCCCGTAAGCGAGCCTCCTCCA
TCCTCGCTGAGCTTAAGCTCGCAGAGCATGCCAAAGGTCTAGCAGCCAAC
GCCGATAAAGATATCCCAACGTTTCGTCCAGGGGATTCGATTGAGGTGAA
GATGGTGACACATTTGACTTCCACGGAGACGGACACCTACAGAGGGGTGG
TGCTGAGCGTACGGAAGAATGGGGCCGACACGCGGTTTACTCTGGCAGAC
GTGTTCCTGGGCACGCCCATTTTGAGCAGCATCCCACTCTACAGCCCGTT
TATCAAGAGTCTTAAGGTGCTGCAAGCCGCCTACATCCACAAGGGAAAGA
AGCGTGTGCGACGGTCCAAGTTATACTACCTCTGGGAAAAGCGAGATCCC
AAGGTGTTCTCGATCTCCACTTAAGGACACAGAGGGGTGTGTGTGTCTGC
GTGGGGGTGTGGGCAAGGAAGCAAGGAGAGTGAAGTCTTCTTTCGGAAGT
TTGGAATACTGTAAGATATGAATTACAGACGAGGAGGAAAGAAGAAAAAG
GAATAACCACAAAATAGACGAGGACAGGA
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protein sequence of NO08G03310.1

>NO08G03310.1-protein ID=NO08G03310.1-protein|Name=NO08G03310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MAAAARAVGHAWTRLVSSTIMGTRSSGGLSSSTMSNTRPISSASSPMSAA
TSTPTPTAAIAATRPPKHKTPRKRASSILAELKLAEHAKGLAANADKDIP
TFRPGDSIEVKMVTHLTSTETDTYRGVVLSVRKNGADTRFTLADVFLGTP
ILSSIPLYSPFIKSLKVLQAAYIHKGKKRVRRSKLYYLWEKRDPKVFSIS
T*
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mRNA from alignment at chr8:912366..914522-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03310.1 ID=NO08G03310.1|Name=NO08G03310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2157bp|location=Sequence derived from alignment at chr8:912366..914522- (Nannochloropsis oceanica)
GACCATAACAGCGTATTAATCTGTACTAGCATGTGATAAAAAAGTAAGTT
TATTGCGATCTGGAGAGGCAGCAAGGCAAAAAAGCAGCCAGGCAGGTATT
CGCCCTTGCCCGCTTTTTCTTTTATGCACTCTGGTCTATCGTCCCTTGTC
GACAAAGTGCTTTCGAGGGAGGCTCGGCTTCATAAAGAGGAAGCACCGTA
GTATCGTCGTAATGGTGCCGGTGGTGGACAAGGAGCTAGTCCGTGTGGTT
GCAGGTAGCAAGCAAGCGGAAGTGTCTGTGAGGAGTATTGAGGCTGAAGA
CGACGGAGTTCTTTCTCATCACTGGTGCGGCACGACGTCGAAGGTATCAT
CGCGGTCCTTGGTTTCAGTCAAAGCTATGGTCACTGTATAGAAAAACAAG
GATCAAGGCCCGAAGAACACTGCAGCGCAGTGAGAGCATGAGCTTGGTCA
GAGTGTGATATATGGATGTAGTTAACTGCCCATTCCCCTGTCTTTCATCC
TGCCTCTCCCACAAACCATCGCACGGCCAACTAAACTTACTATCCCCCCC
ACCCCCAAACACACAGCCATGGCAGCAGCAGCAAGAGCCGTGGGACATGC
CTGGACGCGGCTCGTGTCATCAACAATCATGGGCACGAGAAGTAGCGGCG
GTCTCTCCTCCTCCACTATGAGCAACACCCGTCCCATCTCCTCTGCCTCC
TCCCCCATGTCGGCCGCTACTTCCACTCCCACACCCACCGCAGCCATCGC
GGCCACCAGACCACCCAAACACAAGACGCCCCGTAAGCGGTAAGTTCCCC
TTGCTTGCGAAGAGTCGGACCAGCCTTTGGAAGGGAGGATGATTTGCGCG
GACGTTGTAGTATAGAGCCTCAAGAGCGTGCGACATGTCATCGCGAACAT
GATTGCAGCGAAGGGGGAAATCCCAATACTTATCAATCTCAAAACCGAAT
TCCGGGCTCTTTATCAAGAACACCAGGAGGAAGTGAGGGAGGACGTGGCG
GATCGGCCTCAAGGCACTCTCTCTCTATTGTTATACATCAGTCGAGCGTA
TGGTATCGGGAGCGCTTTCAGTATGCCTCTGCCCGTCTACGCTTGGCATG
CTCCAAATCTACCCCTCTTTCTTCCTTATCGTCCTTGTCACAAATATCTC
CTCCCTCCCACTTGCTTCCTCCGCGTACCCCCAAACTTTACACAGAGCCT
CCTCCATCCTCGCTGAGCTTAAGCTCGCAGAGCATGCCAAAGGTCTAGCA
GCCAACGCCGATAAAGATATCCCAACGTTTCGTCCAGGGGATTCGATTGA
GGTGAAGATGGTGACACATTTGACTTCCACGGAGACGGACACCTACAGAG
GGGTGGTGCTGAGCGTACGGAAGAATGGGGCCGACACGCGGTTTACTCTG
GCAGACGTGCGTATTTAGGGAAGGGACGTGAAGGAAGTGGGGGGGAGAAA
GTGTGCATACCGTTGTTTGTGTAAGAAGTTGCCTGTCCTGATTGCGTCCC
TAGGCGCGGCGGCTAACAGGCTTTTGCCCTTACTCCCTTCAACTAAAGTC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACGTTAAA
TAACCTACGAATTGACAGGTGTTCCTGGGCACGCCCATTTTGAGCAGCAT
CCCACTCTACAGCCCGTTTATCAAGAGTCTTAAGGTTAGGTCGGGTTTTC
GTGCCGGGGTGTGGGTGTGGTGGGTGTGTATCTGAGGGAGAAAACACAGA
TTGAAAGCATCTTCCGGTACTCACCGTCAAACTCCCACTGCTCCCACGCA
CCCCACTCCACCTCTTTCACCCAAATCAAAACCTATACACTCAGGTGCTG
CAAGCCGCCTACATCCACAAGGGAAAGAAGCGTGTGCGACGGTCCAAGTT
ATACTACCTCTGGGAAAAGCGAGATCCCAAGGTGTTCTCGATCTCCACTT
AAGGACACAGAGGGGTGTGTGTGTCTGCGTGGGGGTGTGGGCAAGGAAGC
AAGGAGAGTGAAGTCTTCTTTCGGAAGTTTGGAATACTGTAAGATATGAA
TTACAGACGAGGAGGAAAGAAGAAAAAGGAATAACCACAAAATAGACGAG
GACAGGA
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Coding sequence (CDS) from alignment at chr8:912366..914522-

>NO08G03310.1 ID=NO08G03310.1|Name=NO08G03310.1|organism=Nannochloropsis oceanica|type=CDS|length=606bp|location=Sequence derived from alignment at chr8:912366..914522- (Nannochloropsis oceanica)
ATGGCAGCAGCAGCAAGAGCCGTGGGACATGCCTGGACGCGGCTCGTGTC
ATCAACAATCATGGGCACGAGAAGTAGCGGCGGTCTCTCCTCCTCCACTA
TGAGCAACACCCGTCCCATCTCCTCTGCCTCCTCCCCCATGTCGGCCGCT
ACTTCCACTCCCACACCCACCGCAGCCATCGCGGCCACCAGACCACCCAA
ACACAAGACGCCCCGTAAGCGAGCCTCCTCCATCCTCGCTGAGCTTAAGC
TCGCAGAGCATGCCAAAGGTCTAGCAGCCAACGCCGATAAAGATATCCCA
ACGTTTCGTCCAGGGGATTCGATTGAGGTGAAGATGGTGACACATTTGAC
TTCCACGGAGACGGACACCTACAGAGGGGTGGTGCTGAGCGTACGGAAGA
ATGGGGCCGACACGCGGTTTACTCTGGCAGACGTGTTCCTGGGCACGCCC
ATTTTGAGCAGCATCCCACTCTACAGCCCGTTTATCAAGAGTCTTAAGGT
GCTGCAAGCCGCCTACATCCACAAGGGAAAGAAGCGTGTGCGACGGTCCA
AGTTATACTACCTCTGGGAAAAGCGAGATCCCAAGGTGTTCTCGATCTCC
ACTTAA
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Synonyms
Publications